-
1
-
-
33747624926
-
High-throughput fuorescence microscopy for systems biology
-
Pepperkok, R. & Ellenberg, J. High-throughput fuorescence microscopy for systems biology. Nat. Rev. Mol. Cell Biol. 7, 690-696 (2006).
-
(2006)
Nat. Rev. Mol. Cell Biol.
, vol.7
, pp. 690-696
-
-
Pepperkok, R.1
Ellenberg, J.2
-
3
-
-
34247186766
-
Animal models of human disease: Zebrafsh swim into view
-
Lieschke, G.J. & Currie, P.D. Animal models of human disease: zebrafsh swim into view. Nat. Rev. Genet. 8, 353-367 (2007).
-
(2007)
Nat. Rev. Genet.
, vol.8
, pp. 353-367
-
-
Lieschke, G.J.1
Currie, P.D.2
-
4
-
-
67650759473
-
Zebrafsh embryos as models for embryotoxic and teratological effects of chemicals
-
Yang, L. et al. Zebrafsh embryos as models for embryotoxic and teratological effects of chemicals. Reprod. Toxicol. 28, 245-253 (2009).
-
(2009)
Reprod. Toxicol.
, vol.28
, pp. 245-253
-
-
Yang, L.1
-
5
-
-
0026507320
-
Specifc activation of mammalian Hox promoters in mosaic transgenic zebrafsh
-
Westerfeld, M., Wegner, J., Jegalian, B.G., DeRobertis, E.M. & Puschel, A.W. Specifc activation of mammalian Hox promoters in mosaic transgenic zebrafsh. Genes Dev. 6, 591-598 (1992).
-
(1992)
Genes Dev.
, vol.6
, pp. 591-598
-
-
Westerfeld, M.1
Wegner, J.2
Jegalian, B.G.3
Derobertis, E.M.4
Puschel, A.W.5
-
6
-
-
0344171940
-
Intronic enhancers control expression of zebrafsh sonic hedgehog in foor plate and notochord
-
Müller, F. et al. Intronic enhancers control expression of zebrafsh sonic hedgehog in foor plate and notochord. Development 126, 2103-2116 (1999).
-
(1999)
Development
, vol.126
, pp. 2103-2116
-
-
Müller, F.1
-
7
-
-
0035810946
-
Regulation of the stem cell leukemia (SCL) gene: A tale of two fshes
-
Barton, L.M. et al. Regulation of the stem cell leukemia (SCL) gene: a tale of two fshes. Proc. Natl. Acad. Sci. USA 98, 6747-6752 (2001).
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 6747-6752
-
-
Barton, L.M.1
-
8
-
-
20044366725
-
Highly conserved non-coding sequences are associated with vertebrate development
-
Woolfe, A. et al. Highly conserved non-coding sequences are associated with vertebrate development. PLoS Biol. 3, e7 (2005).
-
(2005)
PLoS Biol.
, vol.3
-
-
Woolfe, A.1
-
9
-
-
37049028158
-
Automated, quantitative screening assay for antiangiogenic compounds using transgenic zebrafsh
-
Tran, T.C. et al. Automated, quantitative screening assay for antiangiogenic compounds using transgenic zebrafsh. Cancer Res. 67, 11386-11392 (2007).
-
(2007)
Cancer Res.
, vol.67
, pp. 11386-11392
-
-
Tran, T.C.1
-
10
-
-
33646234464
-
Computerized image analysis for quantitative neuronal phenotyping in zebrafsh
-
Liu, T. et al. Computerized image analysis for quantitative neuronal phenotyping in zebrafsh. J. Neurosci. Methods 153, 190-202 (2006).
-
(2006)
J. Neurosci. Methods
, vol.153
, pp. 190-202
-
-
Liu, T.1
-
11
-
-
61649105020
-
Automated image-based phenotypic analysis in zebrafsh embryos
-
Vogt, A. et al. Automated image-based phenotypic analysis in zebrafsh embryos. Dev. Dyn. 238, 656-663 (2009).
-
(2009)
Dev. Dyn.
, vol.238
, pp. 656-663
-
-
Vogt, A.1
-
12
-
-
0347914540
-
Conserved elements in Pax6 intron 7 involved in (auto)regulation and alternative transcription
-
Kleinjan, D.A., Seawright, A., Childs, A.J. & van Heyningen, V. Conserved elements in Pax6 intron 7 involved in (auto)regulation and alternative transcription. Dev. Biol. 265, 462-477 (2004).
-
(2004)
Dev. Biol.
, vol.265
, pp. 462-477
-
-
Kleinjan, D.A.1
Seawright, A.2
Childs, A.J.3
Van Heyningen, V.4
-
13
-
-
0042810698
-
A long-range Shh enhancer regulates expression in the developing limb and fn and is associated with preaxial polydactyly
-
Lettice, L.A. et al. A long-range Shh enhancer regulates expression in the developing limb and fn and is associated with preaxial polydactyly. Hum. Mol. Genet. 12, 1725-1735 (2003).
-
(2003)
Hum. Mol. Genet.
, vol.12
, pp. 1725-1735
-
-
Lettice, L.A.1
-
14
-
-
33744805985
-
Genome-wide analysis of mammalian promoter architecture and evolution
-
Carninci, P. et al. Genome-wide analysis of mammalian promoter architecture and evolution. Nat. Genet. 38, 626-635 (2006).
-
(2006)
Nat. Genet.
, vol.38
, pp. 626-635
-
-
Carninci, P.1
-
15
-
-
34249098071
-
Mammalian RNA polymerase II core promoters: Insights from genome-wide studies
-
Sandelin, A. et al. Mammalian RNA polymerase II core promoters: insights from genome-wide studies. Nat. Rev. Genet. 8, 424-436 (2007).
-
(2007)
Nat. Rev. Genet.
, vol.8
, pp. 424-436
-
-
Sandelin, A.1
-
16
-
-
44649193565
-
The RNA polymerase II core promoter\-the gateway to transcription
-
Juven-Gershon, T., Hsu, J.Y., Theisen, J.W. & Kadonaga, J.T. The RNA polymerase II core promoter\-the gateway to transcription. Curr. Opin. Cell Biol. 20, 253-259 (2008).
-
(2008)
Curr. Opin. Cell Biol.
, vol.20
, pp. 253-259
-
-
Juven-Gershon, T.1
Hsu, J.Y.2
Theisen, J.W.3
Kadonaga, J.T.4
-
17
-
-
12944307837
-
Comparative functional genomics revealed conservation and diversifcation of three enhancers of the isl1 gene for motor and sensory neuron-specifc expression
-
Uemura, O. et al. Comparative functional genomics revealed conservation and diversifcation of three enhancers of the isl1 gene for motor and sensory neuron-specifc expression. Dev. Biol. 278, 587-606 (2005).
-
(2005)
Dev. Biol.
, vol.278
, pp. 587-606
-
-
Uemura, O.1
-
18
-
-
4544331181
-
Sonic hedgehog, secreted by amacrine cells, acts as a short-range signal to direct differentiation and lamination in the zebrafsh retina
-
Shkumatava, A., Fischer, S., Müller, F., Strahle, U. & Neumann, C.J. Sonic hedgehog, secreted by amacrine cells, acts as a short-range signal to direct differentiation and lamination in the zebrafsh retina. Development 131, 3849-3858 (2004).
-
(2004)
Development
, vol.131
, pp. 3849-3858
-
-
Shkumatava, A.1
Fischer, S.2
Müller, F.3
Strahle, U.4
Neumann, C.J.5
-
19
-
-
0343488508
-
Expression and regulation of a netrin homologue in the zebrafsh embryo
-
Strahle, U., Fischer, N. & Blader, P. Expression and regulation of a netrin homologue in the zebrafsh embryo. Mech. Dev. 62, 147-160 (1997).
-
(1997)
Mech. Dev.
, vol.62
, pp. 147-160
-
-
Strahle, U.1
Fischer, N.2
Blader, P.3
-
20
-
-
0033789065
-
Direct action of the nodal-related signal cyclops in induction of sonic hedgehog in the ventral midline of the CNS
-
Müller, F. et al. Direct action of the nodal-related signal cyclops in induction of sonic hedgehog in the ventral midline of the CNS. Development 127, 3889-3897 (2000).
-
(2000)
Development
, vol.127
, pp. 3889-3897
-
-
Müller, F.1
-
21
-
-
34548075253
-
Hedgehog signaling patterns the outgrowth of unpaired skeletal appendages in zebrafsh
-
Hadzhiev, Y. et al. Hedgehog signaling patterns the outgrowth of unpaired skeletal appendages in zebrafsh. BMC Dev. Biol. 7, 75 (2007).
-
(2007)
BMC Dev. Biol.
, vol.7
, pp. 75
-
-
Hadzhiev, Y.1
-
22
-
-
25444431772
-
Large-scale enhancer detection in the zebrafsh genome
-
Ellingsen, S. et al. Large-scale enhancer detection in the zebrafsh genome. Development 132, 3799-3811 (2005).
-
(2005)
Development
, vol.132
, pp. 3799-3811
-
-
Ellingsen, S.1
-
23
-
-
4544222912
-
Tol2 transposon-mediated enhancer trap to identify developmentally regulated zebrafsh genes in vivo
-
Parinov, S., Kondrichin, I., Korzh, V. & Emelyanov, A. Tol2 transposon-mediated enhancer trap to identify developmentally regulated zebrafsh genes in vivo. Dev. Dyn. 231, 449-459 (2004).
-
(2004)
Dev. Dyn.
, vol.231
, pp. 449-459
-
-
Parinov, S.1
Kondrichin, I.2
Korzh, V.3
Emelyanov, A.4
-
24
-
-
34247899224
-
Targeting neural circuitry in zebrafsh using GAL4 enhancer trapping
-
Scott, E.K. et al. Targeting neural circuitry in zebrafsh using GAL4 enhancer trapping. Nat. Methods 4, 323-326 (2007).
-
(2007)
Nat. Methods
, vol.4
, pp. 323-326
-
-
Scott, E.K.1
-
25
-
-
39549113462
-
Genetic dissection of neural circuits by Tol2 transposon-mediated Gal4 gene and enhancer trapping in zebrafsh
-
Asakawa, K. et al. Genetic dissection of neural circuits by Tol2 transposon-mediated Gal4 gene and enhancer trapping in zebrafsh. Proc. Natl. Acad. Sci. USA 105, 1255-1260 (2008).
-
(2008)
Proc. Natl. Acad. Sci. USA
, vol.105
, pp. 1255-1260
-
-
Asakawa, K.1
-
26
-
-
34250163564
-
A transgene-assisted genetic screen identifes essential regulators of vascular development in vertebrate embryos
-
Jin, S.W. et al. A transgene-assisted genetic screen identifes essential regulators of vascular development in vertebrate embryos. Dev. Biol. 307, 29-42 (2007).
-
(2007)
Dev. Biol.
, vol.307
, pp. 29-42
-
-
Jin, S.W.1
-
27
-
-
33846078622
-
The UCSC genome browser database: Update 2007
-
Kuhn, R.M. et al. The UCSC genome browser database: update 2007. Nucleic Acids Res. 35, D668-D673 (2007).
-
(2007)
Nucleic Acids Res.
, vol.35
-
-
Kuhn, R.M.1
-
28
-
-
41249100736
-
A multicassette Gateway vector set for high throughput and comparative analyses in ciona and vertebrate embryos
-
Roure, A. et al. A multicassette Gateway vector set for high throughput and comparative analyses in ciona and vertebrate embryos. PLoS One 2, e916 (2007).
-
(2007)
PLoS One
, vol.2
-
-
Roure, A.1
-
29
-
-
34248550634
-
Identifcation of zygotic genes expressed at the midblastula transition in zebrafsh
-
O'Boyle, S., Bree, R.T., McLoughlin, S., Grealy, M. & Byrnes, L. Identifcation of zygotic genes expressed at the midblastula transition in zebrafsh. Biochem. Biophys. Res. Commun. 358, 462-468 (2007).
-
(2007)
Biochem. Biophys. Res. Commun.
, vol.358
, pp. 462-468
-
-
O'Boyle, S.1
Bree, R.T.2
McLoughlin, S.3
Grealy, M.4
Byrnes, L.5
-
30
-
-
34548414195
-
The TATA-binding protein regulates maternal mRNA degradation and differential zygotic transcription in zebrafsh
-
Ferg, M. et al. The TATA-binding protein regulates maternal mRNA degradation and differential zygotic transcription in zebrafsh. EMBO J. 26, 3945-3956 (2007).
-
(2007)
EMBO J.
, vol.26
, pp. 3945-3956
-
-
Ferg, M.1
-
31
-
-
38549094621
-
DBTSS: Database of transcription start sites progress report 2008
-
Wakaguri, H., Yamashita, R., Suzuki, Y., Sugano, S. & Nakai, K. DBTSS: database of transcription start sites, progress report 2008. Nucleic Acids Res. 36, D97-D101 (2008).
-
(2008)
Nucleic Acids Res.
, vol.36
-
-
Wakaguri, H.1
Yamashita, R.2
Suzuki, Y.3
Sugano, S.4
Nakai, K.5
-
32
-
-
1842374429
-
Activator effect of coinjected enhancers on the muscle-specifc expression of promoters in zebrafsh embryos
-
Müller, F. et al. Activator effect of coinjected enhancers on the muscle-specifc expression of promoters in zebrafsh embryos. Mol. Reprod. Dev. 47, 404-412 (1997).
-
(1997)
Mol. Reprod. Dev.
, vol.47
, pp. 404-412
-
-
Müller, F.1
-
33
-
-
0030039249
-
Two Pax-binding sites are required for early embryonic brain expression of an Engrailed-2 transgene
-
Song, D.L., Chalepakis, G., Gruss, P. & Joyner, A.L. Two Pax-binding sites are required for early embryonic brain expression of an Engrailed-2 transgene. Development 122, 627-635 (1996).
-
(1996)
Development
, vol.122
, pp. 627-635
-
-
Song, D.L.1
Chalepakis, G.2
Gruss, P.3
Joyner, A.L.4
-
34
-
-
34248153777
-
Genomic regulatory blocks encompass multiple neighboring genes and maintain conserved synteny in vertebrates
-
Kikuta, H. et al. Genomic regulatory blocks encompass multiple neighboring genes and maintain conserved synteny in vertebrates. Genome Res. 17, 545-555 (2007).
-
(2007)
Genome Res.
, vol.17
, pp. 545-555
-
-
Kikuta, H.1
-
35
-
-
0041857925
-
Germ-line transmission of a myocardium-specifc GFP transgene reveals critical regulatory elements in the cardiac myosin light chain 2 promoter of zebrafsh
-
Huang, C.J., Tu, C.T., Hsiao, C.D., Hsieh, F.J. & Tsai, H.J. Germ-line transmission of a myocardium-specifc GFP transgene reveals critical regulatory elements in the cardiac myosin light chain 2 promoter of zebrafsh. Dev. Dyn. 228, 30-40 (2003).
-
(2003)
Dev. Dyn.
, vol.228
, pp. 30-40
-
-
Huang, C.J.1
Tu, C.T.2
Hsiao, C.D.3
Hsieh, F.J.4
Tsai, H.J.5
-
36
-
-
0342635450
-
A highly conserved enhancer in the Dlx5/Dlx6 intergenic region is the site of cross-regulatory interactions between Dlx genes in the embryonic forebrain
-
Zerucha, T. et al. A highly conserved enhancer in the Dlx5/Dlx6 intergenic region is the site of cross-regulatory interactions between Dlx genes in the embryonic forebrain. J. Neurosci. 20, 709-721 (2000).
-
(2000)
J. Neurosci.
, vol.20
, pp. 709-721
-
-
Zerucha, T.1
-
37
-
-
22144446344
-
Identifcation of a conserved 125 base-pair Hb9 enhancer that specifes gene expression to spinal motor neurons
-
Nakano, T., Windrem, M., Zappavigna, V. & Goldman, S.A. Identifcation of a conserved 125 base-pair Hb9 enhancer that specifes gene expression to spinal motor neurons. Dev. Biol. 283, 474-485 (2005).
-
(2005)
Dev. Biol.
, vol.283
, pp. 474-485
-
-
Nakano, T.1
Windrem, M.2
Zappavigna, V.3
Goldman, S.A.4
-
38
-
-
33747743032
-
Shuffing of cis-regulatory elements is a pervasive feature of the vertebrate lineage
-
Sanges, R. et al. Shuffing of cis-regulatory elements is a pervasive feature of the vertebrate lineage. Genome Biol. 7, R56 (2006).
-
(2006)
Genome Biol.
, vol.7
-
-
Sanges, R.1
-
39
-
-
77950493039
-
-
University of Oregon Press, Eugene, Oregon, USA
-
Westerfeld, M. The Zebrafsh Book. (University of Oregon Press, Eugene, Oregon, USA, 1995).
-
(1995)
The Zebrafsh Book
-
-
Westerfeld, M.1
-
40
-
-
0029045033
-
Stages of embryonic development of the zebrafsh
-
Kimmel, C.B., Ballard, W.W., Kimmel, S.R., Ullmann, B. & Schilling, T.F. Stages of embryonic development of the zebrafsh. Dev. Dyn. 203, 253-310 (1995).
-
(1995)
Dev. Dyn.
, vol.203
, pp. 253-310
-
-
Kimmel, C.B.1
Ballard, W.W.2
Kimmel, S.R.3
Ullmann, B.4
Schilling, T.F.5
-
41
-
-
0242458219
-
A microscope-based screening platform for large-scale functional protein analysis in intact cells
-
Liebel, U. et al. A microscope-based screening platform for large-scale functional protein analysis in intact cells. FEBS Lett. 554, 394-398 (2003).
-
(2003)
FEBS Lett.
, vol.554
, pp. 394-398
-
-
Liebel, U.1
|