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Volumn 233, Issue 1, 2009, Pages 114-131

Automated identification of neurons in 3D confocal datasets from zebrafish brainstem

Author keywords

Database; Fluorescence; Hough; Lesion; Phenotype; Reticulospinal; Segmentation; Spinal; Stereology; Tracing; Vertebrate

Indexed keywords

AUTOMATION; BRAIN; CELLS; CYTOLOGY; LOCATION; NEURONS;

EID: 58449134848     PISSN: 00222720     EISSN: 13652818     Source Type: Journal    
DOI: 10.1111/j.1365-2818.2008.03102.x     Document Type: Article
Times cited : (13)

References (105)
  • 1
    • 0041839665 scopus 로고    scopus 로고
    • Median-based robust algorithms for tracing neurons from noisy confocal microscope images
    • Al-Kofahi, K.A., Can, A., Lasek, S., et al 2003a) Median-based robust algorithms for tracing neurons from noisy confocal microscope images. IEEE Trans. Info. Technol. Biomed. 7, 302 317.
    • (2003) IEEE Trans. Info. Technol. Biomed. , vol.7 , pp. 302-317
    • Al-Kofahi, K.A.1    Can, A.2    Lasek, S.3    Al, E.4
  • 2
    • 0042229093 scopus 로고    scopus 로고
    • Algorithms for accurate 3D registration of neuronal images acquired by confocal scanning laser microscopy
    • &
    • Al-Kofahi, O., Can, A., Lasek, S., Szarowski, D.H., Turner, J.N. & Roysam, B. (2003b) Algorithms for accurate 3D registration of neuronal images acquired by confocal scanning laser microscopy. J. Microsc. 211, 8 18.
    • (2003) J. Microsc. , vol.211 , pp. 8-18
    • Al-Kofahi, O.1    Can, A.2    Lasek, S.3    Szarowski, D.H.4    Turner, J.N.5    Roysam, B.6
  • 3
    • 33745005265 scopus 로고    scopus 로고
    • Automated semantic analysis of changes in image sequences of neurons in culture
    • &
    • Al-Kofahi, O., Radke, R.J., Roysam, B. & Banker, G. (2006) Automated semantic analysis of changes in image sequences of neurons in culture. IEEE Trans. Biomed. Eng. 53, 1109 1123.
    • (2006) IEEE Trans. Biomed. Eng. , vol.53 , pp. 1109-1123
    • Al-Kofahi, O.1    Radke, R.J.2    Roysam, B.3    Banker, G.4
  • 4
    • 39549113462 scopus 로고    scopus 로고
    • Genetic dissection of neural circuits by Tol2 transposon-mediated Gal4 gene and enhancer trapping in zebrafish
    • Asakawa, K., Suster, M.L., Mizusawa, K., et al 2008) Genetic dissection of neural circuits by Tol2 transposon-mediated Gal4 gene and enhancer trapping in zebrafish. Proc. Natl. Acad. Sci. USA 105, 1255 1260.
    • (2008) Proc. Natl. Acad. Sci. USA , vol.105 , pp. 1255-1260
    • Asakawa, K.1    Suster, M.L.2    Mizusawa, K.3    Al, E.4
  • 6
    • 0043231282 scopus 로고    scopus 로고
    • Semi-automated software for the three-dimensional delineation of complex vascular networks
    • &
    • Barber, P.R., Vojnovic, B., Ameer-Beg, S.M., Hodgkiss, R.J., Tozer, G.M. & Wilson, J. (2003) Semi-automated software for the three-dimensional delineation of complex vascular networks. J. Microscopy 211, 54 62.
    • (2003) J. Microscopy , vol.211 , pp. 54-62
    • Barber, P.R.1    Vojnovic, B.2    Ameer-Beg, S.M.3    Hodgkiss, R.J.4    Tozer, G.M.5    Wilson, J.6
  • 7
    • 33646901053 scopus 로고    scopus 로고
    • A gene catalogue of the amphioxus nervous system
    • Benito-Gutiérrez, È. (2006) A gene catalogue of the amphioxus nervous system. Int. J. Biol. Sci. 2, 149 160.
    • (2006) Int. J. Biol. Sci. , vol.2 , pp. 149-160
    • Benito-Gutiérrez, È.1
  • 8
    • 0025603667 scopus 로고
    • Identification of spinal neurons in the embryonic and larval zebrafish
    • &
    • Bernhardt, R.R., Chitnis, A.B., Lindamer, L. & Kuwada, J.Y. (1990) Identification of spinal neurons in the embryonic and larval zebrafish. J. Comp. Neurol. 302, 603 616.
    • (1990) J. Comp. Neurol. , vol.302 , pp. 603-616
    • Bernhardt, R.R.1    Chitnis, A.B.2    Lindamer, L.3    Kuwada, J.Y.4
  • 9
    • 0001722484 scopus 로고
    • The watershed transformation applied to image segmentation
    • Beucher, S. (1992) The watershed transformation applied to image segmentation. Scanning Microsc. Inter. 6, 299 314.
    • (1992) Scanning Microsc. Inter. , vol.6 , pp. 299-314
    • Beucher, S.1
  • 10
    • 33947582475 scopus 로고    scopus 로고
    • Comparison of four freely available frameworks for image processing and visualization that use ITK
    • &
    • Bitter, I., Van Uitert, R., Wolf, I., Ibáñez, L. & Kuhnigk, J.M. (2007) Comparison of four freely available frameworks for image processing and visualization that use ITK. IEEE Trans Vis Comput Graph. 13, 483 493.
    • (2007) IEEE Trans Vis Comput Graph. , vol.13 , pp. 483-493
    • Bitter, I.1    Van Uitert, R.2    Wolf, I.3    Ibáñez, L.4    Kuhnigk, J.M.5
  • 11
    • 36049001150 scopus 로고    scopus 로고
    • The neuron classification problem
    • &
    • Bota, M. & Swanson, L.W. (2007) The neuron classification problem. Brain Res Rev. 56, 79 88.
    • (2007) Brain Res Rev. , vol.56 , pp. 79-88
    • Bota, M.1    Swanson, L.W.2
  • 12
  • 13
    • 0028887617 scopus 로고
    • Axogenesis in the embryonic brain of the grasshopper Schistocerca gregaria: An identified cell analysis of early brain development
    • &
    • Boyan, G., Therianos, S., Williams, J.L. & Reichert, H. (1995) Axogenesis in the embryonic brain of the grasshopper Schistocerca gregaria: an identified cell analysis of early brain development. Development 121, 75 86.
    • (1995) Development , vol.121 , pp. 75-86
    • Boyan, G.1    Therianos, S.2    Williams, J.L.3    Reichert, H.4
  • 15
    • 0026967479 scopus 로고
    • A survey of image registration techniques
    • Brown, L.G. (1992) A survey of image registration techniques. ACM Comput. Surv. 24, 325 376.
    • (1992) ACM Comput. Surv. , vol.24 , pp. 325-376
    • Brown, L.G.1
  • 16
    • 0035063871 scopus 로고    scopus 로고
    • Contributions of identifiable neurons and neuron classes to lamprey vertebrate neurobiology
    • Buchanan, J.T. (2001) Contributions of identifiable neurons and neuron classes to lamprey vertebrate neurobiology. Prog. Neurobiol. 63, 441 466.
    • (2001) Prog. Neurobiol. , vol.63 , pp. 441-466
    • Buchanan, J.T.1
  • 18
    • 0025343141 scopus 로고
    • Suppressive control of the crustacean pyloric network by a pair of identified interneurons. I. Modulation of the motor pattern
    • &
    • Cazalets, J.R., Nagy, F. & Moulins, M. (1990) Suppressive control of the crustacean pyloric network by a pair of identified interneurons. I. Modulation of the motor pattern. J. Neuro. 10, 448 457.
    • (1990) J. Neuro. , vol.10 , pp. 448-457
    • Cazalets, J.R.1    Nagy, F.2    Moulins, M.3
  • 19
    • 33645326241 scopus 로고    scopus 로고
    • Automated segmentation, classification, and tracking of cancer cell nuclei in time-lapse microscopy
    • &
    • Chen, X., Zhou, X. & Wong, S.T.C. 2006) Automated segmentation, classification, and tracking of cancer cell nuclei in time-lapse microscopy. IEEE Trans. Biomed. Eng. 53, 762 766.
    • (2006) IEEE Trans. Biomed. Eng. , vol.53 , pp. 762-766
    • Chen, X.1    Zhou, X.2    Wong, S.T.C.3
  • 21
    • 3042565868 scopus 로고    scopus 로고
    • Automatic identification of subcellular phenotypes on human cell arrays
    • Conrad, C., Erfle, H., Warnat, P., et al 2004) Automatic identification of subcellular phenotypes on human cell arrays. Genome Research 14, 1130 1136.
    • (2004) Genome Research , vol.14 , pp. 1130-1136
    • Conrad, C.1    Erfle, H.2    Warnat, P.3    Al, E.4
  • 22
    • 84918846009 scopus 로고
    • A fast segmentation scheme for white blood cell images
    • In: Proceedings 11th IAPR International Conference, Vol. pp. The Hague.
    • Cseke, I. (1992) A fast segmentation scheme for white blood cell images. In : Pattern Recognition: Image, Speech and Signal Analysis, Proceedings 11th IAPR International Conference, Vol. III, pp. 530 533. The Hague.
    • (1992) Pattern Recognition: Image, Speech and Signal Analysis , vol.3 , pp. 530-533
    • Cseke, I.1
  • 24
    • 0028286536 scopus 로고
    • Long distance axonal regeneration of identified lamprey reticulospinal neurons
    • &
    • Davis, G.R. Jr. & McClellan, A.D. (1994) Long distance axonal regeneration of identified lamprey reticulospinal neurons. Exp. Neurol. 127, 94 105.
    • (1994) Exp. Neurol. , vol.127 , pp. 94-105
    • Davis Jr., G.R.1    McClellan, A.D.2
  • 25
    • 57949093534 scopus 로고    scopus 로고
    • Lesions of descending motor pathways deconstrain spinal activity patterns: Results from larval zebrafish
    • Day, L.J., Knudsen, D.P., Dhanota, H., Severi, K., Jose, J.V. & O'Malley, D.M. (2005) Lesions of descending motor pathways deconstrain spinal activity patterns: results from larval zebrafish. Soc. Neurosci. Abs. 2005, ;751.11.
    • (2005) Soc. Neurosci. Abs. , vol.2005 , pp. 75111
    • Day, L.J.1    Knudsen, D.P.2    Dhanota, H.3    Severi, K.4    Jose, J.V.5    O'Malley, D.M.6
  • 26
    • 0027234283 scopus 로고    scopus 로고
    • Neocortical neuronal diversity: Chemical heterogeneity revealed by colocalization studies of classic neurotransmitters, neuropeptides, calcium-binding proteins, and cell surface molecules
    • De Felipe, J. (2004) Neocortical neuronal diversity: chemical heterogeneity revealed by colocalization studies of classic neurotransmitters, neuropeptides, calcium-binding proteins, and cell surface molecules. Cerebral Cortex 3, 273 289.
    • (2004) Cerebral Cortex , vol.3 , pp. 273-289
    • De Felipe, J.1
  • 27
  • 28
    • 0033119281 scopus 로고    scopus 로고
    • In vivo recording from identifiable neurons of the locomotor network in the developing zebrafish
    • &
    • Drapeau, P., Ali, D.W., Buss, R.R. & Saint-Amant, L. (1999) In vivo recording from identifiable neurons of the locomotor network in the developing zebrafish. J. Neurosci. Meth. 88, 1 13.
    • (1999) J. Neurosci. Meth. , vol.88 , pp. 1-13
    • Drapeau, P.1    Ali, D.W.2    Buss, R.R.3    Saint-Amant, L.4
  • 29
    • 12344263975 scopus 로고    scopus 로고
    • CoCoDat: A database system for organizing and selecting quantitative data on single neurons and neuronal microcircuitry
    • &
    • Dyhrfjeld-Johnsen, J., Maier, J., Schubert, D., Staiger, J., Luhmann, H.J., Stephan, K.E. & Kötter, R. (2005) CoCoDat: a database system for organizing and selecting quantitative data on single neurons and neuronal microcircuitry. J. Neurosci. Meth. 141, 291 308.
    • (2005) J. Neurosci. Meth. , vol.141 , pp. 291-308
    • Dyhrfjeld-Johnsen, J.1    Maier, J.2    Schubert, D.3    Staiger, J.4    Luhmann, H.J.5    Stephan, K.E.6    Kötter, R.7
  • 30
    • 0016736774 scopus 로고
    • Mauthner neuron field potential in newly hatched larvae of the zebra fish
    • &
    • Eaton, R.C. & Farley, R.D. (1975) Mauthner neuron field potential in newly hatched larvae of the zebra fish. J. Neurophys. 38, 502 512.
    • (1975) J. Neurophys. , vol.38 , pp. 502-512
    • Eaton, R.C.1    Farley, R.D.2
  • 31
    • 0035058463 scopus 로고    scopus 로고
    • The Mauthner cell and other identified neurons of the brainstem escape network of fish
    • &
    • Eaton, R.C., Lee, R.K. & Foreman, M.B. (2001) The Mauthner cell and other identified neurons of the brainstem escape network of fish. Prog. Neurobiol. 63, 467 485.
    • (2001) Prog. Neurobiol. , vol.63 , pp. 467-485
    • Eaton, R.C.1    Lee, R.K.2    Foreman, M.B.3
  • 32
    • 0028795229 scopus 로고
    • Visualization of active neural circuitry in the spinal cord of intact zebrafish
    • &
    • Fetcho, J.R. & O'Malley, D.M. (1995) Visualization of active neural circuitry in the spinal cord of intact zebrafish. J. Neurophys. 73, 399 406.
    • (1995) J. Neurophys. , vol.73 , pp. 399-406
    • Fetcho, J.R.1    O'Malley, D.M.2
  • 33
    • 0031921612 scopus 로고    scopus 로고
    • Monitoring activity in neuronal populations with single-cell resolution in a behaving vertebrate
    • &
    • Fetcho, J.R., Cox, K.J.A. & O'Malley, D.M. (1998) Monitoring activity in neuronal populations with single-cell resolution in a behaving vertebrate. Histochem. J. 30, 153 167.
    • (1998) Histochem. J. , vol.30 , pp. 153-167
    • Fetcho, J.R.1    Cox, K.J.A.2    O'Malley, D.M.3
  • 34
    • 18244406829 scopus 로고    scopus 로고
    • Whole brain segmentation: Automated labeling of neuroanatomical structures in the human brain
    • Fischl, B., Salat, D.H., Busa, E., et al 2002) Whole brain segmentation: automated labeling of neuroanatomical structures in the human brain. Neuron 33, 341 355.
    • (2002) Neuron , vol.33 , pp. 341-355
    • Fischl, B.1    Salat, D.H.2    Busa, E.3    Al, E.4
  • 35
    • 0030923183 scopus 로고    scopus 로고
    • Combinatorial and chemotopic odorant coding in the zebrafish olfactory bulb visualized by optical imaging
    • &
    • Friedrich, R.W. & Korsching, S.I. (1997) Combinatorial and chemotopic odorant coding in the zebrafish olfactory bulb visualized by optical imaging. Neuron 18, 737 752.
    • (1997) Neuron , vol.18 , pp. 737-752
    • Friedrich, R.W.1    Korsching, S.I.2
  • 36
    • 0017999811 scopus 로고
    • Neuronal control of swimming in the medicinal leech. IV. Identification of a network of oscillatory interneurones
    • &
    • Friesen, W.O., Poon, M. & Stent, G.S. (1978) Neuronal control of swimming in the medicinal leech. IV. Identification of a network of oscillatory interneurones. J. Exp. Biol. 75, 25 43.
    • (1978) J. Exp. Biol. , vol.75 , pp. 25-43
    • Friesen, W.O.1    Poon, M.2    Stent, G.S.3
  • 37
    • 0000431607 scopus 로고
    • Two inhibitory mechanisms in the Mauthner neurons of goldfish
    • &
    • Furukawa, T. & Furshpan, E.J. (1963) Two inhibitory mechanisms in the Mauthner neurons of goldfish. J. Neurophysiol. 26, 140 176.
    • (1963) J. Neurophysiol. , vol.26 , pp. 140-176
    • Furukawa, T.1    Furshpan, E.J.2
  • 38
    • 0035878596 scopus 로고    scopus 로고
    • Rapid lesioning of large numbers of identified vertebrate neurons: Applications in zebrafish
    • &
    • Gahtan, E. & O'Malley, D.M. (2001) Rapid lesioning of large numbers of identified vertebrate neurons: applications in zebrafish. J. Neurosci. Meth. 108, 97 110.
    • (2001) J. Neurosci. Meth. , vol.108 , pp. 97-110
    • Gahtan, E.1    O'Malley, D.M.2
  • 39
    • 0037471432 scopus 로고    scopus 로고
    • Visually guided injection of identified reticulospinal neurons in zebrafish: A survey of spinal arborization patterns
    • &
    • Gahtan, E. & O'Malley, D.M. (2003) Visually guided injection of identified reticulospinal neurons in zebrafish: a survey of spinal arborization patterns. J. Comp. Neurol. 459, 186 200.
    • (2003) J. Comp. Neurol. , vol.459 , pp. 186-200
    • Gahtan, E.1    O'Malley, D.M.2
  • 40
    • 0036092535 scopus 로고    scopus 로고
    • Evidence for a widespread brain stem escape network in larval zebrafish
    • &
    • Gahtan, E., Sankrithi, N., Campos, J.B. & O'Malley, D.M. (2002) Evidence for a widespread brain stem escape network in larval zebrafish. J. Neurophysiol. 87, 608 614.
    • (2002) J. Neurophysiol. , vol.87 , pp. 608-614
    • Gahtan, E.1    Sankrithi, N.2    Campos, J.B.3    O'Malley, D.M.4
  • 41
    • 27144512133 scopus 로고    scopus 로고
    • Visual prey capture in larval zebrafish is controlled by identified reticulospinal neurons downstream of the tectum
    • &
    • Gahtan, E., Tanger, P. & Baier, H. (2005) Visual prey capture in larval zebrafish is controlled by identified reticulospinal neurons downstream of the tectum. J. Neurosci. 25, 9294 9303.
    • (2005) J. Neurosci. , vol.25 , pp. 9294-9303
    • Gahtan, E.1    Tanger, P.2    Baier, H.3
  • 42
    • 32544445546 scopus 로고    scopus 로고
    • Molecular and morphological heterogeneity of neural precursors in the mouse neocortical proliferative zones
    • &
    • Gal, J.S., Morozov, Y.M., Ayoub, A.E., Chatterjee, M., Rakic, P. & Haydar, T.F. (2006) Molecular and morphological heterogeneity of neural precursors in the mouse neocortical proliferative zones. J. Neurosci. 26, 1045 1056.
    • (2006) J. Neurosci. , vol.26 , pp. 1045-1056
    • Gal, J.S.1    Morozov, Y.M.2    Ayoub, A.E.3    Chatterjee, M.4    Rakic, P.5    Haydar, T.F.6
  • 43
    • 0002530312 scopus 로고    scopus 로고
    • Elastic matching: Continuum mechanical and probabilistic analysis
    • & ed. by. A.W. Toga), pp. Academic Press, New York.
    • Gee, J.C. & Bajcsy, R.K. (1998) Elastic matching: continuum mechanical and probabilistic analysis. Brain Warping (ed. by A.W. Toga), pp. 183 197. Academic Press, New York.
    • (1998) Brain Warping , pp. 183-197
    • Gee, J.C.1    Bajcsy, R.K.2
  • 44
    • 0034694198 scopus 로고    scopus 로고
    • Appreciating the difference between design-based and model-based sampling strategies in quantitative morphology of the nervous system
    • Geuna, S. (2000) Appreciating the difference between design-based and model-based sampling strategies in quantitative morphology of the nervous system. J. Comp. Neurol. 427, 333 339.
    • (2000) J. Comp. Neurol. , vol.427 , pp. 333-339
    • Geuna, S.1
  • 45
    • 21344461180 scopus 로고    scopus 로고
    • The revolution of counting "tops": Two decades of the dissector principle in morphological research
    • Geuna, S. (2005) The revolution of counting "tops": two decades of the dissector principle in morphological research. Microsc. Res. Tech. 66, 270 274.
    • (2005) Microsc. Res. Tech. , vol.66 , pp. 270-274
    • Geuna, S.1
  • 46
    • 0242401835 scopus 로고    scopus 로고
    • A gene expression atlas of the central nervous system based on bacterial artificial chromosomes
    • Gong, S., Zheng, C., Doughty, M.L., et al 2003) A gene expression atlas of the central nervous system based on bacterial artificial chromosomes. Nature 425, 917 925.
    • (2003) Nature , vol.425 , pp. 917-925
    • Gong, S.1    Zheng, C.2    Doughty, M.L.3    Al, E.4
  • 49
    • 0035855379 scopus 로고    scopus 로고
    • A confocal study of spinal interneurons in living larval zebrafish
    • &
    • Hale, M.E., Ritter, D.A. & Fetcho, J.R. (2001) A confocal study of spinal interneurons in living larval zebrafish. J. Comp. Neurol. 437, 1 16.
    • (2001) J. Comp. Neurol. , vol.437 , pp. 1-16
    • Hale, M.E.1    Ritter, D.A.2    Fetcho, J.R.3
  • 50
    • 0032444348 scopus 로고    scopus 로고
    • Inducible and constitutive transcription factors in the mammalian nervous system: Control of gene expression by Jun, Fos and Krox, and CREB/ATF proteins
    • &
    • Herdegen, T. & Leah, J.D. (1998) Inducible and constitutive transcription factors in the mammalian nervous system: control of gene expression by Jun, Fos and Krox, and CREB/ATF proteins. Brain Res. Brain Res. Rev. 28, 370 490.
    • (1998) Brain Res. Brain Res. Rev. , vol.28 , pp. 370-490
    • Herdegen, T.1    Leah, J.D.2
  • 51
    • 34447276933 scopus 로고    scopus 로고
    • If I only had a brain: Exploring mouse brain images in the Allen brain atlas
    • &
    • Hochheiser, H. & Yanowitz, J. (2007) If I only had a brain: exploring mouse brain images in the Allen brain atlas. Biol. Cell. 99, 403 409.
    • (2007) Biol. Cell. , vol.99 , pp. 403-409
    • Hochheiser, H.1    Yanowitz, J.2
  • 53
    • 38049061220 scopus 로고    scopus 로고
    • Sparse optical microstimulation in barrel cortex drives learned behaviour in freely moving mice
    • &
    • Huber, D., Petreanu, L., Ghitani, N., Ranade, S., Hromádka, T., Mainen, Z. & Svoboda, K. (2008) Sparse optical microstimulation in barrel cortex drives learned behaviour in freely moving mice. Nature 451, 61 64.
    • (2008) Nature , vol.451 , pp. 61-64
    • Huber, D.1    Petreanu, L.2    Ghitani, N.3    Ranade, S.4    Hromádka, T.5    Mainen, Z.6    Svoboda, K.7
  • 54
    • 34548080622 scopus 로고    scopus 로고
    • Neuronal diversity in GABAergic long-range projections from the hippocampus
    • Jinno, S., Klausberger, T., Marton, L.F., et al 2007) Neuronal diversity in GABAergic long-range projections from the hippocampus. J. Neurosci. 27, 8790 8804.
    • (2007) J. Neurosci. , vol.27 , pp. 8790-8804
    • Jinno, S.1    Klausberger, T.2    Marton, L.F.3    Al, E.4
  • 55
    • 0034249514 scopus 로고    scopus 로고
    • Landmark matching via large deformation diffeomorphisms
    • &
    • Joshi, S.C. & Miller, M.I. (2000) Landmark matching via large deformation diffeomorphisms. IEEE Trans. Image Process. 9, 1357 1370.
    • (2000) IEEE Trans. Image Process. , vol.9 , pp. 1357-1370
    • Joshi, S.C.1    Miller, M.I.2
  • 56
    • 0024993224 scopus 로고
    • Actions of identified neuromodulatory neurons in a simple motor system
    • &
    • Katz, P.S. & Harris-Warrick, R.M. (1990) Actions of identified neuromodulatory neurons in a simple motor system. Trends Neurosci. 13, 367 373.
    • (1990) Trends Neurosci. , vol.13 , pp. 367-373
    • Katz, P.S.1    Harris-Warrick, R.M.2
  • 57
    • 0020034255 scopus 로고
    • Brain neurons which project to the spinal cord in young larvae of the zebrafish
    • &
    • Kimmel, C.B., Powell, S.L. & Metcalfe, W.K. (1982) Brain neurons which project to the spinal cord in young larvae of the zebrafish. J. Comp. Neurol. 205, 112 127.
    • (1982) J. Comp. Neurol. , vol.205 , pp. 112-127
    • Kimmel, C.B.1    Powell, S.L.2    Metcalfe, W.K.3
  • 58
    • 0021943485 scopus 로고
    • T-reticular interneurons: A class of serially repeating cells in the zebrafish hindbrain
    • &
    • Kimmel, C.B., Metcalfe, W.K. & Schabtach, E. (1985) T-reticular interneurons: a class of serially repeating cells in the zebrafish hindbrain. J. Comp. Neurol. 233, 365 376.
    • (1985) J. Comp. Neurol. , vol.233 , pp. 365-376
    • Kimmel, C.B.1    Metcalfe, W.K.2    Schabtach, E.3
  • 59
    • 0016814999 scopus 로고
    • An electrically mediated inhibition in goldfish medulla
    • &
    • Korn, H. & Faber, D.S. (1975) An electrically mediated inhibition in goldfish medulla. J. Neurophysiol. 38, 452 471.
    • (1975) J. Neurophysiol. , vol.38 , pp. 452-471
    • Korn, H.1    Faber, D.S.2
  • 60
    • 0035877194 scopus 로고    scopus 로고
    • Confocal microscopy and stereology: Estimating volume, number, surface area and length by virtual test probes applied to three-dimensional images
    • &
    • Kubinova, L. & Janacek, J. (2001) Confocal microscopy and stereology: estimating volume, number, surface area and length by virtual test probes applied to three-dimensional images. Microsc. Res. Tech. 53, 425 435.
    • (2001) Microsc. Res. Tech. , vol.53 , pp. 425-435
    • Kubinova, L.1    Janacek, J.2
  • 61
    • 0014680894 scopus 로고
    • Neuronal controls of a behavioral response mediated by the abdominal ganglion of Aplysia
    • &
    • Kupfermann, I. & Kandel, E.R. (1969) Neuronal controls of a behavioral response mediated by the abdominal ganglion of Aplysia. Science 164, 847 850.
    • (1969) Science , vol.164 , pp. 847-850
    • Kupfermann, I.1    Kandel, E.R.2
  • 62
    • 0038106361 scopus 로고    scopus 로고
    • From cells to circuits: Development of the zebrafish spinal cord
    • &
    • Lewis, K.E. & Eisen, J.S. (2003) From cells to circuits: development of the zebrafish spinal cord. Prog. Neurobiol. 69, 419 49.
    • (2003) Prog. Neurobiol. , vol.69 , pp. 419-449
    • Lewis, K.E.1    Eisen, J.S.2
  • 63
    • 0034918283 scopus 로고    scopus 로고
    • Zebrafish mutants: Behavioral genetic studies of visual system defects
    • Li, L. (2001) Zebrafish mutants: Behavioral genetic studies of visual system defects. Develop. Dynamics 221, 365 372.
    • (2001) Develop. Dynamics , vol.221 , pp. 365-372
    • Li, L.1
  • 64
    • 0033153156 scopus 로고    scopus 로고
    • Laser ablation reveals functional relationships of segmental hindbrain neurons in zebrafish
    • &
    • Liu, K. & Fetcho, J.R. (1999) Laser ablation reveals functional relationships of segmental hindbrain neurons in zebrafish. Neuron 23, 325 335.
    • (1999) Neuron , vol.23 , pp. 325-335
    • Liu, K.1    Fetcho, J.R.2
  • 65
    • 40249084139 scopus 로고    scopus 로고
    • Genetic dissection of neural circuits
    • &
    • Luo, L., Callaway, E.M. & Svoboda, K. (2008) Genetic dissection of neural circuits. Neuron 57, 634 660.
    • (2008) Neuron , vol.57 , pp. 634-660
    • Luo, L.1    Callaway, E.M.2    Svoboda, K.3
  • 66
    • 33749544741 scopus 로고    scopus 로고
    • Modern stereological evaluation in the aging human substantia nigra
    • &
    • Ma, S.Y., Longo, F.M., Roytta, M. & Collan, Y. (2003) Modern stereological evaluation in the aging human substantia nigra. Image Anal. Stereol. 22, 73 80.
    • (2003) Image Anal. Stereol. , vol.22 , pp. 73-80
    • Ma, S.Y.1    Longo, F.M.2    Roytta, M.3    Collan, Y.4
  • 67
    • 0141756285 scopus 로고    scopus 로고
    • Interneuron Diversity series: Hippocampal interneuron classifications - Making things as simple as possible, not simpler
    • &
    • Maccaferri, G. & Lacaille, J.C. (2003) Interneuron Diversity series: Hippocampal interneuron classifications - making things as simple as possible, not simpler. Trends Neurosci. 26, 564 571.
    • (2003) Trends Neurosci. , vol.26 , pp. 564-571
    • MacCaferri, G.1    Lacaille, J.C.2
  • 68
    • 60849111992 scopus 로고    scopus 로고
    • Atlas warping for brain morphometry
    • &
    • Machado, A.M.C. & Gee, J.C. (2003) Atlas warping for brain morphometry. SPIE 3338, 642.
    • (2003) SPIE , vol.3338 , pp. 642
    • MacHado, A.M.C.1    Gee, J.C.2
  • 69
    • 0023162336 scopus 로고
    • Specificity of synaptic regeneration in the spinal cord of the larval sea lamprey
    • &
    • Mackler, S.A. & Selzer, M.E. (1987) Specificity of synaptic regeneration in the spinal cord of the larval sea lamprey. J. Physiol. 388, 183 198.
    • (1987) J. Physiol. , vol.388 , pp. 183-198
    • MacKler, S.A.1    Selzer, M.E.2
  • 70
    • 0032078125 scopus 로고    scopus 로고
    • Extreme diversity among amacrine cells: Implications for function
    • &
    • MacNeil, M.A. & Masland, R.H. (1998) Extreme diversity among amacrine cells: implications for function. Neuron 20, 971 982.
    • (1998) Neuron , vol.20 , pp. 971-982
    • MacNeil, M.A.1    Masland, R.H.2
  • 71
    • 33846447430 scopus 로고    scopus 로고
    • Specification and connectivity of neuronal subtypes in the sensory lineage
    • &
    • Marmigere, F. & Ernfors, P. (2007) Specification and connectivity of neuronal subtypes in the sensory lineage. Nat. Rev. Neurosci. 8, 114 127.
    • (2007) Nat. Rev. Neurosci. , vol.8 , pp. 114-127
    • Marmigere, F.1    Ernfors, P.2
  • 72
    • 0242321783 scopus 로고    scopus 로고
    • The cell-centered database: A database for multiscale structural and protein localization data from light and electron microscopy
    • Martone, M.E., Zhang, S., Gupta, A., et al 2003) The cell-centered database: a database for multiscale structural and protein localization data from light and electron microscopy. Neuroinformatics 1, 379 395.
    • (2003) Neuroinformatics , vol.1 , pp. 379-395
    • Martone, M.E.1    Zhang, S.2    Gupta, A.3    Al, E.4
  • 73
    • 40649095676 scopus 로고    scopus 로고
    • The cell centered database project: An update on building community resources for managing and sharing 3D imaging data
    • Martone, M.E., Tran, J., Wong, W.W., et al 2008) The cell centered database project: an update on building community resources for managing and sharing 3D imaging data. J. Struct. Biol. 161, 220 331.
    • (2008) J. Struct. Biol. , vol.161 , pp. 220-331
    • Martone, M.E.1    Tran, J.2    Wong, W.W.3    Al, E.4
  • 74
    • 0035425307 scopus 로고    scopus 로고
    • Neuronal diversity in the retina
    • Masland, R.H. (2001) Neuronal diversity in the retina. Curr. Opin. Neurobiol. 11, 431 436.
    • (2001) Curr. Opin. Neurobiol. , vol.11 , pp. 431-436
    • Masland, R.H.1
  • 75
    • 0022551407 scopus 로고
    • Segmental homologies among reticulospinal neurons in the hindbrain of the zebrafish larva
    • &
    • Metcalfe, W.K., Mendelson, B. & Kimmel, C.B. (1986) Segmental homologies among reticulospinal neurons in the hindbrain of the zebrafish larva. J. Comp. Neurol. 251, 147 159.
    • (1986) J. Comp. Neurol. , vol.251 , pp. 147-159
    • Metcalfe, W.K.1    Mendelson, B.2    Kimmel, C.B.3
  • 76
    • 1842454208 scopus 로고    scopus 로고
    • Common sensory inputs and differential excitability of segmentally homologous reticulospinal neurons in the hindbrain
    • &
    • Nakayama, H. & Oda, Y. (2004) Common sensory inputs and differential excitability of segmentally homologous reticulospinal neurons in the hindbrain. J. Neurosci. 24, 3199 3209.
    • (2004) J. Neurosci. , vol.24 , pp. 3199-3209
    • Nakayama, H.1    Oda, Y.2
  • 77
    • 33749063646 scopus 로고    scopus 로고
    • Probing the transcriptome of neuronal cell types
    • &
    • Nelson, S.B., Hempel, C. & Sugino, K. (2006a) Probing the transcriptome of neuronal cell types. Curr. Opin. Neurobiol. 16, 571 576.
    • (2006) Curr. Opin. Neurobiol. , vol.16 , pp. 571-576
    • Nelson, S.B.1    Hempel, C.2    Sugino, K.3
  • 78
    • 33745144588 scopus 로고    scopus 로고
    • The problem of neuronal cell types: A physiological genomics approach
    • &
    • Nelson, S.B., Sugino, K. & Hempel, C.M. (2006b) The problem of neuronal cell types: a physiological genomics approach. Trends Neurosci. 29, 339 345.
    • (2006) Trends Neurosci. , vol.29 , pp. 339-345
    • Nelson, S.B.1    Sugino, K.2    Hempel, C.M.3
  • 79
    • 15444372530 scopus 로고    scopus 로고
    • Functional imaging reveals rapid development of visual response properties in the zebrafish tectum
    • &
    • Niell, C.M. & Smith, S.J. (2005) Functional imaging reveals rapid development of visual response properties in the zebrafish tectum. Neuron 45, 941 951.
    • (2005) Neuron , vol.45 , pp. 941-951
    • Niell, C.M.1    Smith, S.J.2
  • 80
    • 0035964754 scopus 로고    scopus 로고
    • Glutamic acid decarboxylase-immunoreactivity of bulbar respiratory neurons identified by intracellular recording and labeling in rats
    • &
    • Okazaki, M., Takeda, R., Haji, A. & Yamazaki, H. (2001) Glutamic acid decarboxylase-immunoreactivity of bulbar respiratory neurons identified by intracellular recording and labeling in rats. Brain Res. 914, 34 47.
    • (2001) Brain Res. , vol.914 , pp. 34-47
    • Okazaki, M.1    Takeda, R.2    Haji, A.3    Yamazaki, H.4
  • 81
    • 0001764565 scopus 로고    scopus 로고
    • The zebrafish hindbrain: A transparent system for imaging motor circuitry
    • & ed. by. R. Yuste, F. Lanni. & A. Konnerth. pp. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
    • O'Malley, D.M. & Fetcho, J.R. (2000) The zebrafish hindbrain: a transparent system for imaging motor circuitry. Imaging Living Cells (ed. by R. Yuste, F. Lanni & A. Konnerth pp. 14.11 14.12. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
    • (2000) Imaging Living Cells , pp. 1411-1412
    • O'Malley, D.M.1    Fetcho, J.R.2
  • 82
    • 0030478625 scopus 로고    scopus 로고
    • Imaging the functional organization of zebrafish hindbrain segments
    • &
    • O'Malley, D.M., Kao, Y.-H. & Fetcho, J.R. (1996) Imaging the functional organization of zebrafish hindbrain segments. Neuron 17, 1145 1155.
    • (1996) Neuron , vol.17 , pp. 1145-1155
    • O'Malley, D.M.1    Kao, Y.-H.2    Fetcho, J.R.3
  • 83
    • 0037402891 scopus 로고    scopus 로고
    • Probing neural circuits in the zebrafish: A suite of optical techniques
    • &
    • O'Malley, D.M., Zhou, Q. & Gahtan, E. (2003) Probing neural circuits in the zebrafish: a suite of optical techniques. Methods 30, 49 63.
    • (2003) Methods , vol.30 , pp. 49-63
    • O'Malley, D.M.1    Zhou, Q.2    Gahtan, E.3
  • 84
    • 39749148311 scopus 로고    scopus 로고
    • Control of visually guided behavior by distinct populations of spinal projection neurons
    • &
    • Orger, M.B., Kampff, A.R., Severi, K.E., Bollmann, J.H. & Engert, F. (2008) Control of visually guided behavior by distinct populations of spinal projection neurons. Nature Neurosci. 11, 327 333.
    • (2008) Nature Neurosci. , vol.11 , pp. 327-333
    • Orger, M.B.1    Kampff, A.R.2    Severi, K.E.3    Bollmann, J.H.4    Engert, F.5
  • 85
    • 0030801321 scopus 로고    scopus 로고
    • Sensory neuron number in neonatal and adult rats estimated by means of stereologic and profile-based methods
    • &
    • Popken, G.J. & Farel, P.B. (1997) Sensory neuron number in neonatal and adult rats estimated by means of stereologic and profile-based methods. J. Comp. Neurol. 386, 8 15.
    • (1997) J. Comp. Neurol. , vol.386 , pp. 8-15
    • Popken, G.J.1    Farel, P.B.2
  • 87
    • 33846781000 scopus 로고    scopus 로고
    • Geometric approach to segmentation and protein localization in cell culture assays
    • &
    • Raman, S., Maxwell, C.A., Barcellos-Hoff, M.H. & Parvin, B. (2007) Geometric approach to segmentation and protein localization in cell culture assays. J. Microsc. 225, 22 30.
    • (2007) J. Microsc. , vol.225 , pp. 22-30
    • Raman, S.1    Maxwell, C.A.2    Barcellos-Hoff, M.H.3    Parvin, B.4
  • 88
    • 0014125841 scopus 로고
    • Physiological and anatomical studies on large neurons of central nervous system of the sea lamprey (Petromyzon marinus). I. Muller and Mauthner cells
    • Rovainen, C.M. (1967) Physiological and anatomical studies on large neurons of central nervous system of the sea lamprey (Petromyzon marinus). I. Muller and Mauthner cells. J. Neurophysiol. 30, 1000 1023.
    • (1967) J. Neurophysiol. , vol.30 , pp. 1000-1023
    • Rovainen, C.M.1
  • 89
    • 0036185575 scopus 로고    scopus 로고
    • Automatic recognition of cell layers in corneal confocal microscopy images
    • &
    • Ruggeri, A. & Pajaro, S. (2002) Automatic recognition of cell layers in corneal confocal microscopy images. Computer Meth. Programs Biomed. 68, 25 35.
    • (2002) Computer Meth. Programs Biomed. , vol.68 , pp. 25-35
    • Ruggeri, A.1    Pajaro, S.2
  • 90
    • 34548760721 scopus 로고    scopus 로고
    • Quantitative expression profiling of identified neurons reveals cell-specific constraints on highly variable levels of gene expression
    • &
    • Schulz, D.J., Goaillard, J.M. & Marder, E.E. (2007) Quantitative expression profiling of identified neurons reveals cell-specific constraints on highly variable levels of gene expression. Proc. Natl. Acad. Sci. 104, 13187 13191.
    • (2007) Proc. Natl. Acad. Sci. , vol.104 , pp. 13187-13191
    • Schulz, D.J.1    Goaillard, J.M.2    Marder, E.E.3
  • 91
    • 34247899224 scopus 로고    scopus 로고
    • Targeting neural circuitry in zebrafish using GAL4 enhancer trapping
    • Scott, E.K., Mason, L., Arrenberg, A.B., et al 2007) Targeting neural circuitry in zebrafish using GAL4 enhancer trapping. Nat. Methods 4, 323 326.
    • (2007) Nat. Methods , vol.4 , pp. 323-326
    • Scott, E.K.1    Mason, L.2    Arrenberg, A.B.3    Al, E.4
  • 92
    • 85169172903 scopus 로고    scopus 로고
    • Diversity of visuomotor-response profiles of larval zebrafish reticulospinal neurons revealed by in vivo calcium imaging
    • &
    • Severi, K.E., Orger, M.B., Talsania, S., Kampff, A.R., O'Malley, D.M. & Engert, F. (2007) Diversity of visuomotor-response profiles of larval zebrafish reticulospinal neurons revealed by in vivo calcium imaging. Soc. Neurosci. Abstr. 2007, 924.9.
    • (2007) Soc. Neurosci. Abstr. , vol.2007 , pp. 9249
    • Severi, K.E.1    Orger, M.B.2    Talsania, S.3    Kampff, A.R.4    O'Malley, D.M.5    Engert, F.6
  • 93
    • 33745808854 scopus 로고    scopus 로고
    • Implications of neuronal diversity on population coding
    • &
    • Shamir, M. & Sompolinsky, H. (2006) Implications of neuronal diversity on population coding. Neural Comput. 18, 1951 1986.
    • (2006) Neural Comput. , vol.18 , pp. 1951-1986
    • Shamir, M.1    Sompolinsky, H.2
  • 94
    • 0032497623 scopus 로고    scopus 로고
    • Neuronal diversity: Too many cell types for comfort?
    • Stevens, C.F. (1998) Neuronal diversity: too many cell types for comfort? Curr Biol. 8, R708 R710.
    • (1998) Curr Biol. , vol.8
    • Stevens, C.F.1
  • 95
    • 0028787170 scopus 로고
    • Metamorphosis of spinal-projecting neurons in the brain of the sea lamprey during transformation of the larva to adult: Normal anatomy and response to axotomy
    • &
    • Swain, G.P., Ayers, J. & Selzer, M.E. (1995) Metamorphosis of spinal-projecting neurons in the brain of the sea lamprey during transformation of the larva to adult: normal anatomy and response to axotomy. J. Comp. Neurol. 362, 453 467.
    • (1995) J. Comp. Neurol. , vol.362 , pp. 453-467
    • Swain, G.P.1    Ayers, J.2    Selzer, M.E.3
  • 96
    • 34248548818 scopus 로고    scopus 로고
    • Remote control of neuronal activity with a light-gated glutamate receptor
    • Szobota, S., Gorostiza, P., Del Bene, F., et al 2007) Remote control of neuronal activity with a light-gated glutamate receptor. Neuron 54, 535 545.
    • (2007) Neuron , vol.54 , pp. 535-545
    • Szobota, S.1    Gorostiza, P.2    Del Bene, F.3    Al, E.4
  • 98
    • 0027170807 scopus 로고
    • Heterogeneity of rat corticospinal neurons
    • &
    • Tseng, G.F. & Prince, D.A. (1993) Heterogeneity of rat corticospinal neurons. J. Comp. Neurol. 335, 92 108.
    • (1993) J. Comp. Neurol. , vol.335 , pp. 92-108
    • Tseng, G.F.1    Prince, D.A.2
  • 99
    • 0041194772 scopus 로고    scopus 로고
    • Cell lineage and cell fate specification in the embryonic CNS of Drosophila
    • &
    • Urban, J. & Technau, G.M. (1997) Cell lineage and cell fate specification in the embryonic CNS of Drosophila. Semin. Cell Dev. Biol. 8, 391 400.
    • (1997) Semin. Cell Dev. Biol. , vol.8 , pp. 391-400
    • Urban, J.1    Technau, G.M.2
  • 101
    • 0026172104 scopus 로고
    • Watersheds in digital spaces: An efficient algorithm based on immersion simulations
    • &
    • Vincent, L. & Soille, P. (1991) Watersheds in digital spaces: an efficient algorithm based on immersion simulations. IEEE Trans. Pattern Anal. Mach. Intell. 13, 583 598.
    • (1991) IEEE Trans. Pattern Anal. Mach. Intell. , vol.13 , pp. 583-598
    • Vincent, L.1    Soille, P.2
  • 103
    • 0021013972 scopus 로고
    • Intracellular staining of physiologically identified neurons and axons in the somatosensory thalamus of the cat
    • &
    • Yen, C.T. & Jones, E.G. (1983) Intracellular staining of physiologically identified neurons and axons in the somatosensory thalamus of the cat. Brain Res. 280, 148 154.
    • (1983) Brain Res. , vol.280 , pp. 148-154
    • Yen, C.T.1    Jones, E.G.2
  • 104
    • 33749020262 scopus 로고    scopus 로고
    • Channelrhodopsin-2 and optical control of excitable cells
    • &
    • Zhang, F., Wang, L.P., Boyden, E.S. & Deisseroth, K. (2006) Channelrhodopsin-2 and optical control of excitable cells. Nat. Methods 3, 785 792.
    • (2006) Nat. Methods , vol.3 , pp. 785-792
    • Zhang, F.1    Wang, L.P.2    Boyden, E.S.3    Deisseroth, K.4
  • 105
    • 0017456007 scopus 로고
    • Correlation of the startle reflex and Mauthner cell auditory responses in unrestrained goldfish
    • Zottoli, S.J. (1977) Correlation of the startle reflex and Mauthner cell auditory responses in unrestrained goldfish. J. Exp. Biol. 66, 243 254.
    • (1977) J. Exp. Biol. , vol.66 , pp. 243-254
    • Zottoli, S.J.1


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