-
1
-
-
4344581120
-
The retinal conformation and its environment in rhodopsin in light of a new 2.2 Å crystal structure
-
DOI 10.1016/j.jmb.2004.07.044, PII S0022283604008733
-
Okada, T., Sugihara, M., Bondar, A. N., Elstner, M., Entel, P., and Buss, V. (2004) The retinal conformation and its environment in rhodopsin in light of a new 2.2 Å crystal structure J. Mol. Biol. 342, 571-583 (Pubitemid 39149759)
-
(2004)
Journal of Molecular Biology
, vol.342
, Issue.2
, pp. 571-583
-
-
Okada, T.1
Sugihara, M.2
Bondar, A.-N.3
Elstner, M.4
Entel, P.5
Buss, V.6
-
2
-
-
0034604451
-
Crystal structure of rhodopsin: A G protein-coupled receptor
-
DOI 10.1126/science.289.5480.739
-
Palczewski, K., Kumasaka, T., Hori, T., Behnke, C. A., Motoshima, H., Fox, B. A., Le Trong, I., Teller, D. C., Okada, T., Stenkamp, R. E., Yamamoto, M., and Miyano, M. (2000) Crystal structure of rhodopsin: A G protein-coupled receptor Science 289, 739-745 (Pubitemid 30650186)
-
(2000)
Science
, vol.289
, Issue.5480
, pp. 739-745
-
-
Palczewski, K.1
Kumasaka, T.2
Hori, T.3
Behnke, C.A.4
Motoshima, H.5
Fox, B.A.6
Le Trong, I.7
Teller, D.C.8
Okada, T.9
Stenkamp, R.E.10
Yamamoto, M.11
Miyano, M.12
-
3
-
-
0035800032
-
Advances in determination of a high-resolution three-dimensional structure of rhodopsin, a model of G-protein-coupled receptors (GPCRs)
-
DOI 10.1021/bi0155091
-
Teller, D. C., Okada, T., Behnke, C. A., Palczewski, K., and Stenkamp, R. E. (2001) Advances in determination of a high-resolution three-dimensional structure of rhodopsin, a model of G-protein-coupled receptors (GPCRs) Biochemistry 40, 7761-7772 (Pubitemid 32622966)
-
(2001)
Biochemistry
, vol.40
, Issue.26
, pp. 7761-7772
-
-
Teller, D.C.1
Okada, T.2
Behnke, C.A.3
Palczewski, K.4
Stenkamp, R.E.5
-
4
-
-
0037197848
-
Functional role of internal water molecules in rhodopsin revealed by x-ray crystallography
-
DOI 10.1073/pnas.082666399
-
Okada, T., Fujiyoshi, Y., Silow, M., Navarro, J., Landau, E. M., and Shichida, Y. (2002) Functional role of internal water molecules in rhodopsin revealed by X-ray crystallography Proc. Natl. Acad. Sci. U.S.A. 99, 5982-5987 (Pubitemid 34493251)
-
(2002)
Proceedings of the National Academy of Sciences of the United States of America
, vol.99
, Issue.9
, pp. 5982-5987
-
-
Okada, T.1
Fujiyoshi, Y.2
Silow, M.3
Navarro, J.4
Landau, E.M.5
Shichida, Y.6
-
5
-
-
0035951097
-
Structure and function in rhodopsin: Mapping light-dependent changes in distance between residue 65 in helix TM1 and residues in the sequence 306-319 at the cytoplasmic end of helix TM7 and in helix H8
-
DOI 10.1021/bi011546g
-
Altenbach, C., Cai, K., Klein-Seetharaman, J., Khorana, H. G., and Hubbell, W. L. (2001) Structure and function in rhodopsin: Mapping light-dependent changes in distance between residue 65 in helix TM1 and residues in the sequence 306-319 at the cytoplasmic end of helix TM7 and in helix H8 Biochemistry 40, 15483-15492 (Pubitemid 34015175)
-
(2001)
Biochemistry
, vol.40
, Issue.51
, pp. 15483-15492
-
-
Altenbach, C.1
Cai, K.2
Klein-Seetharaman, J.3
Khorana, H.G.4
Hubbell, W.L.5
-
6
-
-
0035940506
-
Probing the dark state tertiary structure in the cytoplasmic domain of rhodopsin: Proximities between amino acids deduced from spontaneous disulfide bond formation between Cys316 and engineered cysteines in cytoplasmic loop 1
-
DOI 10.1021/bi010746p
-
Klein-Seetharaman, J., Hwa, J., Cai, K., Altenbach, C., Hubbell, W. L., and Khorana, H. G. (2001) Probing the dark state tertiary structure in the cytoplasmic domain of rhodopsin: Proximities between amino acids deduced from spontaneous disulfide bond formation between Cys316 and engineered cysteines in cytoplasmic loop 1 Biochemistry 40, 12472-12478 (Pubitemid 32979699)
-
(2001)
Biochemistry
, vol.40
, Issue.42
, pp. 12472-12478
-
-
Klein-Seetharaman, J.1
Hwa, J.2
Cai, K.3
Altenbach, C.4
Hubbell, W.L.5
Khorana, H.G.6
-
7
-
-
0033613232
-
Structure and function in rhodopsin: Effects of disulfide cross-links in the cytoplasmic face of rhodopsin on transducin activation and phosphorylation by rhodopsin kinase
-
Cai, K., Klein-Seetharaman, J., Hwa, J., Hubbell, W. L., and Khorana, H. G. (1999) Structure and function in rhodopsin: Effects of disulfide cross-links in the cytoplasmic face of rhodopsin on transducin activation and phosphorylation by rhodopsin kinase Biochemistry 38, 12893-12898
-
(1999)
Biochemistry
, vol.38
, pp. 12893-12898
-
-
Cai, K.1
Klein-Seetharaman, J.2
Hwa, J.3
Hubbell, W.L.4
Khorana, H.G.5
-
8
-
-
0029907599
-
Requirement of rigid-body motion of transmembrane helices for light activation of rhodopsin
-
DOI 10.1126/science.274.5288.768
-
Farrens, D. L., Altenbach, C., Yang, K., Hubbell, W. L., and Khorana, H. G. (1996) Requirement of rigid-body motion of transmembrane helices for light activation of rhodopsin Science 274, 768-770 (Pubitemid 26398253)
-
(1996)
Science
, vol.274
, Issue.5288
, pp. 768-770
-
-
Farrens, D.L.1
Altenbach, C.2
Yang, K.3
Hubbell, W.L.4
Khorana, H.G.5
-
9
-
-
0027443076
-
Formation of the meta II photointermediate is accompanied by conformational changes in the cytoplasmic surface of rhodopsin
-
DOI 10.1021/bi00096a012
-
Resek, J. F., Farahbakhsh, Z. T., Hubbell, W. L., and Khorana, H. G. (1993) Formation of the meta II photointermediate is accompanied by conformational changes in the cytoplasmic surface of rhodopsin Biochemistry 32, 12025-12032 (Pubitemid 23353640)
-
(1993)
Biochemistry
, vol.32
, Issue.45
, pp. 12025-12032
-
-
Resek, J.F.1
Farahbakhsh, Z.T.2
Hubbell, W.L.3
Khorana, H.G.4
-
10
-
-
1542513779
-
Differential dynamics in the G protein-coupled receptor rhodopsin revealed by solution NMR
-
DOI 10.1073/pnas.0308713101
-
Klein-Seetharaman, J., Yanamala, N. V., Javeed, F., Reeves, P. J., Getmanova, E. V., Loewen, M. C., Schwalbe, H., and Khorana, H. G. (2004) Differential dynamics in the G protein-coupled receptor rhodopsin revealed by solution NMR Proc. Natl. Acad. Sci. U.S.A. 101, 3409-3413 (Pubitemid 38338208)
-
(2004)
Proceedings of the National Academy of Sciences of the United States of America
, vol.101
, Issue.10
, pp. 3409-3413
-
-
Klein-Seetharaman, J.1
Yanamala, N.V.K.2
Javeed, F.3
Reeves, P.J.4
Getmanova, E.V.5
Loewen, M.C.6
Schwalbe, H.7
Khorana, H.G.8
-
11
-
-
21544468844
-
Highly effective phosphorylation by G protein-coupled receptor kinase 7 of light-activated visual pigment in cones
-
DOI 10.1073/pnas.0501875102
-
Tachibanaki, S., Arinobu, D., Shimauchi-Matsukawa, Y., Tsushima, S., and Kawamura, S. (2005) Highly effective phosphorylation by G protein-coupled receptor kinase 7 of light-activated visual pigment in cones Proc. Natl. Acad. Sci. U.S.A. 102, 9329-9334 (Pubitemid 40923563)
-
(2005)
Proceedings of the National Academy of Sciences of the United States of America
, vol.102
, Issue.26
, pp. 9329-9334
-
-
Tachibanaki, S.1
Arinobu, D.2
Shimauchi-Matsukawa, Y.3
Tsushima, S.4
Kawamura, S.5
-
12
-
-
0037016770
-
Functional interaction between bovine rhodopsin and G protein transducin
-
DOI 10.1074/jbc.M104960200
-
Terakita, A., Yamashita, T., Nimbari, N., Kojima, D., and Shichida, Y. (2002) Functional interaction between bovine rhodopsin and G protein transducin J. Biol. Chem. 277, 40-46 (Pubitemid 34952025)
-
(2002)
Journal of Biological Chemistry
, vol.277
, Issue.1
, pp. 40-46
-
-
Terakita, A.1
Yamashita, T.2
Nimbari, N.3
Kojima, D.4
Shichida, Y.5
-
13
-
-
0032549618
-
Identification of a new intermediate state that binds but not activates transducin in the bleaching process of bovine rhodopsin
-
DOI 10.1016/S0014-5793(98)00216-6, PII S0014579398002166
-
Tachibanaki, S., Imai, H., Terakita, A., and Shichida, Y. (1998) Identification of a new intermediate state that binds but not activates transducin in the bleaching process of bovine rhodopsin FEBS Lett. 425, 126-130 (Pubitemid 28149754)
-
(1998)
FEBS Letters
, vol.425
, Issue.1
, pp. 126-130
-
-
Tachibanaki, S.1
Imai, H.2
Terakita, A.3
Shichida, Y.4
-
14
-
-
0028296886
-
A C-terminal peptide of bovine rhodopsin binds to the transducin α-subunit and facilitates its activation
-
Phillips, W. J. and Cerione, R. A. (1994) A C-terminal peptide of bovine rhodopsin binds to the transducin α-subunit and facilitates its activation Biochem. J. 299 (Part 2) 351-357 (Pubitemid 24114125)
-
(1994)
Biochemical Journal
, vol.299
, Issue.2
, pp. 351-357
-
-
Phillips, W.J.1
Cerione, R.A.2
-
15
-
-
29944445101
-
Isolation and characterization of visual pigment kinase-related genes in carp retina: Polyphyly in GRK1 subtypes, GRK1A and 1B
-
Shimauchi-Matsukawa, Y., Aman, Y., Tachibanaki, S., and Kawamura, S. (2005) Isolation and characterization of visual pigment kinase-related genes in carp retina: Polyphyly in GRK1 subtypes, GRK1A and 1B Mol. Vision 11, 1220-1228 (Pubitemid 43040699)
-
(2005)
Molecular Vision
, vol.11
, pp. 1220-1228
-
-
Shimauchi-Matsukawa, Y.1
Aman, Y.2
Tachibanaki, S.3
Kawamura, S.4
-
16
-
-
0033586719
-
Binding of Arrestin to Cytoplasmic Loops Mutants of Bovine Rhodopsin
-
Raman, D., Osawa, S., and Weiss, E. R. (1999) Binding of Arrestin to Cytoplasmic Loops Mutants of Bovine Rhodopsin Biochemistry 38, 5117-5123
-
(1999)
Biochemistry
, vol.38
, pp. 5117-5123
-
-
Raman, D.1
Osawa, S.2
Weiss, E.R.3
-
17
-
-
34547130064
-
Systematic Analysis of the Entire Second Extracellular Loop of the V1A Vasopressin Receptor
-
Conner, M., Hawtin, S. R., Simms, J., Wootten, D., Lawson, Z., Conner, A. C., Parslow, R. A., and Wheatley, M. (2007) Systematic Analysis of the Entire Second Extracellular Loop of the V1A Vasopressin Receptor J. Biol. Chem. 282, 17405-17412
-
(2007)
J. Biol. Chem.
, vol.282
, pp. 17405-17412
-
-
Conner, M.1
Hawtin, S.R.2
Simms, J.3
Wootten, D.4
Lawson, Z.5
Conner, A.C.6
Parslow, R.A.7
Wheatley, M.8
-
18
-
-
0025306687
-
Role of the intradiscal domain in rhodopsin assembly and function
-
Doi, T., Molday, R. S., and Khorana, H. G. (1990) Role of the intradiscal domain in rhodopsin assembly and function Proc. Natl. Acad. Sci. U.S.A. 87, 4991-4995
-
(1990)
Proc. Natl. Acad. Sci. U.S.A.
, vol.87
, pp. 4991-4995
-
-
Doi, T.1
Molday, R.S.2
Khorana, H.G.3
-
19
-
-
0037133528
-
Function of extracellular loop 2 in rhodopsin: Glutamic acid 181 modulates stability and absorption wavelength of metarhodopsin II
-
DOI 10.1021/bi0160011
-
Yan, E. C., Kazmi, M. A., De, S., Chang, B. S., Seibert, C., Marin, E. P., Mathies, R. A., and Sakmar, T. P. (2002) Function of extracellular loop 2 in rhodopsin: Glutamic acid 181 modulates stability and absorption wavelength of metarhodopsin II Biochemistry 41, 3620-3627 (Pubitemid 34224674)
-
(2002)
Biochemistry
, vol.41
, Issue.11
, pp. 3620-3627
-
-
Yan, E.C.Y.1
Kazmi, M.A.2
De, S.3
Chang, B.S.W.4
Seibert, C.5
Marin, E.P.6
Mathies, R.A.7
Sakmar, T.P.8
-
20
-
-
0028287273
-
Structure and function in rhodopsin. 7. Point mutations associated with autosomal dominant retinitis pigmentosa
-
DOI 10.1021/bi00186a011
-
Kaushal, S. and Khorana, H. G. (1994) Structure and function in rhodopsin. 7. Point mutations associated with autosomal dominant retinitis pigmentosa Biochemistry 33, 6121-6128 (Pubitemid 24190763)
-
(1994)
Biochemistry
, vol.33
, Issue.20
, pp. 6121-6128
-
-
Kaushal, S.1
Khorana, H.G.2
-
21
-
-
0024110575
-
Cysteine residues 110 and 187 are essential for the formation of correct structure in bovine rhodopsin
-
Karnik, S. S., Sakmar, T. P., Chen, H. B., and Khorana, H. G. (1988) Cysteine residues 110 and 187 are essential for the formation of correct structure in bovine rhodopsin Proc. Natl. Acad. Sci. U.S.A. 85, 8459-8463
-
(1988)
Proc. Natl. Acad. Sci. U.S.A.
, vol.85
, pp. 8459-8463
-
-
Karnik, S.S.1
Sakmar, T.P.2
Chen, H.B.3
Khorana, H.G.4
-
22
-
-
0041629657
-
Retinal counterion switch in the photoactivation of the G protein-coupled receptor rhodopsin
-
DOI 10.1073/pnas.1531970100
-
Yan, E. C., Kazmi, M. A., Ganim, Z., Hou, J. M., Pan, D., Chang, B. S., Sakmar, T. P., and Mathies, R. A. (2003) Retinal counterion switch in the photoactivation of the G protein-coupled receptor rhodopsin Proc. Natl. Acad. Sci. U.S.A. 100, 9262-9267 (Pubitemid 37033917)
-
(2003)
Proceedings of the National Academy of Sciences of the United States of America
, vol.100
, Issue.16
, pp. 9262-9267
-
-
Yan, E.C.Y.1
Kazmi, M.A.2
Ganim, Z.3
Hou, J.-M.4
Pan, D.5
Chang, B.S.W.6
Sakmar, T.P.7
Mathies, R.A.8
-
23
-
-
0028351937
-
Structure and function in rhodopsin: Replacement by alanine of cysteine residues 110 and 187, components of a conserved disulfide bond in rhodopsin, affects the light-activated metarhodopsin II state
-
Davidson, F. F., Loewen, P. C., and Khorana, H. G. (1994) Structure and function in rhodopsin: Replacement by alanine of cysteine residues 110 and 187, components of a conserved disulfide bond in rhodopsin, affects the light-activated metarhodopsin II state Proc. Natl. Acad. Sci. U.S.A. 91, 4029-4033 (Pubitemid 24139566)
-
(1994)
Proceedings of the National Academy of Sciences of the United States of America
, vol.91
, Issue.9
, pp. 4029-4033
-
-
Davidson, F.F.1
Loewen, P.C.2
Khorana, H.G.3
-
24
-
-
0028138240
-
Structure and function in rhodopsin. Requirements of a specific structure for the intradiscal domain
-
Anukanth, A. and Khorana, H. G. (1994) Structure and function in rhodopsin. Requirements of a specific structure for the intradiscal domain J. Biol. Chem. 269, 19738-19744
-
(1994)
J. Biol. Chem.
, vol.269
, pp. 19738-19744
-
-
Anukanth, A.1
Khorana, H.G.2
-
25
-
-
73349083086
-
Computational Screening of Rhodopsin Mutations Associated with Retinitis Pigmentosa
-
Felline, A., Seeber, M., Rao, F., and Fanelli, F. (2009) Computational Screening of Rhodopsin Mutations Associated with Retinitis Pigmentosa J. Chem. Theory Comput. 5, 2472-2485
-
(2009)
J. Chem. Theory Comput.
, vol.5
, pp. 2472-2485
-
-
Felline, A.1
Seeber, M.2
Rao, F.3
Fanelli, F.4
-
26
-
-
0033528711
-
Chloride binding regulates the Schiff base pK in gecko P521 cone-type visual pigment
-
Yuan, C., Kuwata, O., Liang, J., Misra, S., Balashov, S. P., and Ebrey, T. G. (1999) Chloride binding regulates the Schiff base pK in gecko P521 cone-type visual pigment Biochemistry 38, 4649-4654
-
(1999)
Biochemistry
, vol.38
, pp. 4649-4654
-
-
Yuan, C.1
Kuwata, O.2
Liang, J.3
Misra, S.4
Balashov, S.P.5
Ebrey, T.G.6
-
27
-
-
59649112109
-
Helix movement is coupled to displacement of the second extracellular loop in rhodopsin activation
-
Ahuja, S., Hornak, V., Yan, E. C., Syrett, N., Goncalves, J. A., Hirshfeld, A., Ziliox, M., Sakmar, T. P., Sheves, M., Reeves, P. J., Smith, S. O., and Eilers, M. (2009) Helix movement is coupled to displacement of the second extracellular loop in rhodopsin activation Nature 16, 168-176
-
(2009)
Nature
, vol.16
, pp. 168-176
-
-
Ahuja, S.1
Hornak, V.2
Yan, E.C.3
Syrett, N.4
Goncalves, J.A.5
Hirshfeld, A.6
Ziliox, M.7
Sakmar, T.P.8
Sheves, M.9
Reeves, P.J.10
Smith, S.O.11
Eilers, M.12
-
28
-
-
33646205279
-
Role of the Cys18-Cys274 disulfide bond and of the third extracellular loop in the contitutive activation and internalization of angiotensin II type i receptor
-
Correa, S. A. A., Pignatari, G. C., Ferro, R. S., Pacheco, N. A. S., Costa-Neto, C. M., Pesquero, J. B., Oliveira, L., Paiva, A. C. M., and Shimuta, S. I. (2006) Role of the Cys18-Cys274 disulfide bond and of the third extracellular loop in the contitutive activation and internalization of angiotensin II type I receptor Regul. Pept. 134, 132-140
-
(2006)
Regul. Pept.
, vol.134
, pp. 132-140
-
-
Correa, S.A.A.1
Pignatari, G.C.2
Ferro, R.S.3
Pacheco, N.A.S.4
Costa-Neto, C.M.5
Pesquero, J.B.6
Oliveira, L.7
Paiva, A.C.M.8
Shimuta, S.I.9
-
29
-
-
34147167536
-
3 muscarinic acetylcholine receptor activation
-
DOI 10.1074/jbc.M610394200
-
Scarselli, M., Li, B., Kim, S. K., and Wess, J. (2007) Multiple Residues in the Second Extracellular Loop Are Critical for M3 Muscarinic Acetylcholine Receptor Activation J. Biol. Chem. 282, 7385-7396 (Pubitemid 47093690)
-
(2007)
Journal of Biological Chemistry
, vol.282
, Issue.10
, pp. 7385-7396
-
-
Scarselli, M.1
Li, B.2
Kim, S.-K.3
Wess, J.4
-
30
-
-
34548394107
-
Ab initio computational modeling of long loops in G-protein coupled receptors
-
DOI 10.1007/s10822-006-9056-0
-
Kortagere, S., Roy, A., and Mehler, E. L. (2006) Ab initio computational modeling of long loops in G-protein coupled receptors J. Comput.-Aided Mol. Des. 20, 427-436 (Pubitemid 44823881)
-
(2006)
Journal of Computer-Aided Molecular Design
, vol.20
, Issue.7-8
, pp. 427-436
-
-
Kortagere, S.1
Roy, A.2
Mehler, E.L.3
-
31
-
-
77449146970
-
Modeling the possible conformations of the extracellular loops in G-protein-coupled receptors
-
Nikiforovich, G. V., Taylor, C. M., Marshall, G. R., and Baranski, T. J. (2010) Modeling the possible conformations of the extracellular loops in G-protein-coupled receptors Proteins 78, 271-285
-
(2010)
Proteins
, vol.78
, pp. 271-285
-
-
Nikiforovich, G.V.1
Taylor, C.M.2
Marshall, G.R.3
Baranski, T.J.4
-
32
-
-
28444450565
-
Modeling flexible loops in the dark-adapted and activated states of rhodopsin, a prototypical G-protein-coupled receptor
-
DOI 10.1529/biophysj.105.070722
-
Nikiforovich, G. V. and Marshall, G. R. (2005) Modeling Flexible Loops in the Dark-Adapted and Activated States of Rhodopsin, a Prototypical G-Protein Coupled Receptor Biophys. J. 89, 3780-3789 (Pubitemid 41725601)
-
(2005)
Biophysical Journal
, vol.89
, Issue.6
, pp. 3780-3789
-
-
Nikiforovich, G.V.1
Marshall, G.R.2
-
33
-
-
0042165824
-
Three-dimensional model for meta-II rhodopsin, an activated G-protein-coupled receptor
-
DOI 10.1021/bi034586o
-
Nikiforovich, G. V. and Marshall, G. R. (2003) 3D model for Meta-II rhodopsin, An activated G-protein-coupled receptor Biochemistry 42, 9110-9120 (Pubitemid 36935419)
-
(2003)
Biochemistry
, vol.42
, Issue.30
, pp. 9110-9120
-
-
Nikiforovich, G.V.1
Marshall, G.R.2
-
34
-
-
0033621078
-
Photochemistry of the primary event in short-wavelength visual opsins at low temperature
-
Vought, B. W., Dukkipatti, A., Max, M., Knox, B. E., and Birge, R. R. (1999) Photochemistry of the primary event in short-wavelength visual opsins at low temperature Biochemistry 38, 11287-11297
-
(1999)
Biochemistry
, vol.38
, pp. 11287-11297
-
-
Vought, B.W.1
Dukkipatti, A.2
Max, M.3
Knox, B.E.4
Birge, R.R.5
-
35
-
-
0035800098
-
The photobleaching sequence of a short-wavelength visual pigment
-
DOI 10.1021/bi010387y
-
Kusnetzow, A., Dukkipati, A., Babu, K. R., Singh, D., Vought, B. W., Knox, B. E., and Birge, R. R. (2001) The photobleaching sequence of a short-wavelength visual pigment Biochemistry 40, 7832-7844 (Pubitemid 32622974)
-
(2001)
Biochemistry
, vol.40
, Issue.26
, pp. 7832-7844
-
-
Kusnetzow, A.1
Dukkipati, A.2
Babu, K.R.3
Singh, D.4
Vought, B.W.5
Knox, B.E.6
Birge, R.R.7
-
36
-
-
0031031146
-
Activation of transducin by a Xenopus short wavelength visual pigment
-
DOI 10.1074/jbc.272.2.1095
-
Starace, D. M. and Knox, B. E. (1997) Activation of transducin by a Xenopus short wavelength visual pigment J. Biol. Chem. 272, 1095-1100 (Pubitemid 27034604)
-
(1997)
Journal of Biological Chemistry
, vol.272
, Issue.2
, pp. 1095-1100
-
-
Starace, D.M.1
Knox, B.E.2
-
37
-
-
0033873929
-
Comparative protein structure modeling of genes and genomes
-
DOI 10.1146/annurev.biophys.29.1.291
-
Marti-Renom, M. A., Stuart, A. C., Fiser, A., Sanchez, R., Melo, F., and Sali, A. (2000) Comparative protein structure modeling of genes and genomes Annu. Rev. Biophys. Biomol. Struct. 29, 291-325 (Pubitemid 30599596)
-
(2000)
Annual Review of Biophysics and Biomolecular Structure
, vol.29
, pp. 291-325
-
-
Marti-Renom, M.A.1
Stuart, A.C.2
Fiser, A.3
Sanchez, R.4
Melo, F.5
Sali, A.6
-
39
-
-
0029937870
-
Hydrophilicity of cavities in proteins
-
DOI 10.1002/(SICI)1097-0134(199604)24:4<433::AID-PROT3>3.0.CO;2-F
-
Zhang, L. and Hermans, J. (1996) Hydrophilicity of cavities in proteins Proteins 24, 433-438 (Pubitemid 26122057)
-
(1996)
Proteins: Structure, Function and Genetics
, vol.24
, Issue.4
, pp. 433-438
-
-
Zhang, L.1
Hermans, J.2
-
40
-
-
0042415783
-
NAMD2: Greater scalability for parallel molecular dynamics
-
Kalé, L., Skeel, R., Bhandarkar, M., Brunner, R., Gursoy, A., Krawetz, N., Phillips, J., Shinozaki, A., Varadarajan, K., and Schulten, K. (1999) NAMD2: Greater scalability for parallel molecular dynamics J. Comput. Phys. 151, 283-312
-
(1999)
J. Comput. Phys.
, vol.151
, pp. 283-312
-
-
Kalé, L.1
Skeel, R.2
Bhandarkar, M.3
Brunner, R.4
Gursoy, A.5
Krawetz, N.6
Phillips, J.7
Shinozaki, A.8
Varadarajan, K.9
Schulten, K.10
-
41
-
-
0020021284
-
Detergents for extraction of visual pigments: Types, solubilization, and stability
-
Fong, S. L., Tsin, A. T., Bridges, C. D., and Liou, G. I. (1982) Detergents for extraction of visual pigments: Types, solubilization, and stability Methods Enzymol. 81, 133-140
-
(1982)
Methods Enzymol.
, vol.81
, pp. 133-140
-
-
Fong, S.L.1
Tsin, A.T.2
Bridges, C.D.3
Liou, G.I.4
-
42
-
-
0026319199
-
Protein folding and association: Insights from the interfacial and thermodynamic properties of hydrocarbons
-
Nicholls, A., Sharp, K. A., and Honig, B. (1991) Protein folding and association: Insights from the interfacial and thermodynamic properties of hydrocarbons Proteins 11, 281-296
-
(1991)
Proteins
, vol.11
, pp. 281-296
-
-
Nicholls, A.1
Sharp, K.A.2
Honig, B.3
-
43
-
-
84856575538
-
-
Saam, J. (2010) Trajectory-smooth. http://www.ks.uiuc.edu/Research/vmd/ script-library/scripts/trajectory-smooth/.
-
(2010)
Trajectory-smooth
-
-
Saam, J.1
-
44
-
-
0026743174
-
Multiple protein sequence alignment from tertiary structure comparison: Assignment of global and residue confidence levels
-
Russell, R. B. and Barton, G. J. (1992) Multiple protein sequence alignment from tertiary structure comparison: Assignment of global and residue confidence levels Proteins 14, 309-323
-
(1992)
Proteins
, vol.14
, pp. 309-323
-
-
Russell, R.B.1
Barton, G.J.2
-
45
-
-
0035923434
-
Regulation of phototransduction in short-wavelength cone visual pigments via the retinylidene schiff base counterion
-
DOI 10.1021/bi015584b
-
Babu, K. R., Dukkipati, A., Birge, R. R., and Knox, B. E. (2001) Regulation of phototransduction in short-wavelength cone visual pigments via the retinylidene Schiff base counterion Biochemistry 40, 13760-13766 (Pubitemid 33078844)
-
(2001)
Biochemistry
, vol.40
, Issue.46
, pp. 13760-13766
-
-
Babu, K.R.1
Dukkipati, A.2
Birge, R.R.3
Knox, B.E.4
-
46
-
-
73349120806
-
-
Stewart Computational Chemistry, Colorado Springs, CO
-
Stewart, J. J. P. (2008) MOPAC2009 Stewart Computational Chemistry, Colorado Springs, CO, HTTP://OpenMOPAC.net.
-
(2008)
MOPAC2009
-
-
Stewart, J.J.P.1
-
47
-
-
0031473847
-
SWISS-MODEL and the Swiss-PdbViewer: An environment for comparative protein modeling
-
DOI 10.1002/elps.1150181505
-
Guex, N. and Peitsch, M. C. (1997) SWISS-MODEL and the Swiss-PdbViewer: An environment for comparative protein modeling Electrophoresis 18, 2714-2723 (Pubitemid 28059943)
-
(1997)
Electrophoresis
, vol.18
, Issue.15
, pp. 2714-2723
-
-
Guex, N.1
Peitsch, M.C.2
-
48
-
-
35448937584
-
Optimization of parameters for semiempirical methods V: Modification of NDDO approximations and application to 70 elements
-
DOI 10.1007/s00894-007-0233-4
-
Stewart, J. J. P. (2007) Optimization of Parameters for Semiempirical Methods V: Modification of NDDO Approximations and Application to 70 Elements J. Mol. Model. 13, 1173-1213 (Pubitemid 47629446)
-
(2007)
Journal of Molecular Modeling
, vol.13
, Issue.12
, pp. 1173-1213
-
-
Stewart, J.J.P.1
-
49
-
-
84856571569
-
-
G-Protein Couples Receptor Database version 8.1
-
G-Protein Couples Receptor Database version 8.1 (2004) http://www.gpcr.org/7tm/.
-
(2004)
-
-
-
50
-
-
0020713543
-
Monoclonal antibodies to rhodopsin: Characterization, cross-reactivity, and application as structural probes
-
Molday, R. S. and MacKenzie, D. (1983) Monoclonal antibodies to rhodopsin: Characterization, cross-reactivity, and application as structural probes Biochemistry 22, 653-660
-
(1983)
Biochemistry
, vol.22
, pp. 653-660
-
-
Molday, R.S.1
MacKenzie, D.2
-
51
-
-
6344248639
-
Structure of bovine rhodopsin in a trigonal crystal form
-
DOI 10.1016/j.jmb.2004.08.090, PII S0022283604010903
-
Li, J., Edwards, P. C., Burghammer, M., Villa, C., and Schertler, G. F. (2004) Structure of bovine rhodopsin in a trigonal crystal form J. Mol. Biol. 343, 1409-1438 (Pubitemid 39387834)
-
(2004)
Journal of Molecular Biology
, vol.343
, Issue.5
, pp. 1409-1438
-
-
Li, J.1
Edwards, P.C.2
Burghammer, M.3
Villa, C.4
Schertler, G.F.X.5
-
52
-
-
0023515308
-
Expression of a synthetic bovine rhodopsin gene in monkey kidney cells
-
Oprian, D. D., Molday, R. S., Kaufman, R. J., and Khorana, H. G. (1987) Expression of a synthetic bovine rhodopsin gene in monkey kidney cells Proc. Natl. Acad. Sci. U.S.A. 84, 8874-8878
-
(1987)
Proc. Natl. Acad. Sci. U.S.A.
, vol.84
, pp. 8874-8878
-
-
Oprian, D.D.1
Molday, R.S.2
Kaufman, R.J.3
Khorana, H.G.4
-
53
-
-
0035942215
-
Structure and function in rhodopsin: Mass spectrometric identification of the abnormal intradiscal disulfide bond in misfolded retinitis pigmentosa mutants
-
DOI 10.1073/pnas.061632798
-
Hwa, J., Klein-Seetharaman, J., and Khorana, H. G. (2001) Structure and function in rhodopsin: Mass spectrometric identification of the abnormal intradiscal disulfide bond in misfolded retinitis pigmentosa mutants Proc. Natl. Acad. Sci. U.S.A. 98, 4872-4876 (Pubitemid 32397049)
-
(2001)
Proceedings of the National Academy of Sciences of the United States of America
, vol.98
, Issue.9
, pp. 4872-4876
-
-
Hwa, J.1
Klein-Seetharaman, J.2
Khorana, H.G.3
|