Transcription analysis on response of swine lung to H1N1 swine influenza virus

BMC Genomics

Volumn 12, Issue , 2011, Pages

  Li, Yongtao ^a,b   Zhou, Hongbo ^a   Wen, Zhibin ^a   Wu, Shujuan ^a   Huang, Canhui ^a   Jia, Guangmin ^a   Chen, Huanchun ^a   Jin, Meilin ^a  

^a HUAZHONG AGRICULTURAL UNIVERSITY   (China)

^b NONE   (China)

Author keywords

[No Author keywords available]

Indexed keywords

AQUAPORIN 9; CATHEPSIN L; CD14 ANTIGEN; CD146 ANTIGEN; CD163 ANTIGEN; CD45 ANTIGEN; CD79A ANTIGEN; CD86 ANTIGEN; CD8ALPHA ANTIGEN; CELL ADHESION MOLECULE; CHEMOKINE RECEPTOR CCR5; CXCL9 CHEMOKINE; CYTOKINE RECEPTOR; CYTOTOXIC T LYMPHOCYTE ANTIGEN 4; EOTAXIN 3; GAMMA INTERFERON INDUCIBLE PROTEIN 10; INTERFERON REGULATORY FACTOR 3; INTERFERON REGULATORY FACTOR 7; INTERLEUKIN 1 RECEPTOR TYPE II; MITOGEN ACTIVATED PROTEIN KINASE; PEROXISOME PROLIFERATOR ACTIVATED RECEPTOR; PROTEGRIN; RETINOIC ACID INDUCIBLE PROTEIN I; STAT1 PROTEIN; TOLL LIKE RECEPTOR; TOLL LIKE RECEPTOR 3; TOLL LIKE RECEPTOR 8; TOLL LIKE RECEPTOR 9; TRANSFORMING GROWTH FACTOR BETA;

2009 H1N1 INFLUENZA; ANIMAL CELL; ANIMAL EXPERIMENT; ANIMAL TISSUE; ARTICLE; CELL ADHESION; CONTROLLED STUDY; COUGHING; DOWN REGULATION; DYSPNEA; GENE CLUSTER; GENE EXPRESSION; GENE EXPRESSION PROFILING; GENE FUNCTION; GENE OVEREXPRESSION; IMMUNE RESPONSE; INFLAMMATION; LUNG PARENCHYMA; MICROARRAY ANALYSIS; NONHUMAN; NOSE DISEASE; NUCLEOTIDE SEQUENCE; PNEUMONIA; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SIGNAL TRANSDUCTION; SWINE; SWINE INFLUENZA VIRUS; SYMPTOMATOLOGY; UNINDEXED SEQUENCE; UPREGULATION; VIRUS ISOLATION; VIRUS TRANSCRIPTION; ANIMAL; DNA MICROARRAY; GENETIC TRANSCRIPTION; GENETICS; GENOMICS; INFLUENZA VIRUS A H1N1; ISOLATION AND PURIFICATION; LUNG; METABOLISM; ORTHOMYXOVIRUS INFECTION; PATHOGENICITY; VIROLOGY;

SUIDAE; SUS; SWINE INFLUENZA VIRUS;

ANIMALS; GENE EXPRESSION PROFILING; GENOMICS; INFLUENZA A VIRUS, H1N1 SUBTYPE; LUNG; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; ORTHOMYXOVIRIDAE INFECTIONS; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; SWINE; TRANSCRIPTION, GENETIC;

EID: 79961107241     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-12-398     Document Type: Article

References (64)

1. Van Reeth K, Nauwynck H, Pensaert M. Clinical effects of experimental dual infections with porcine reproductive and respiratory syndrome virus followed by swine influenza virus in conventional and colostrum-deprived pigs. J Vet Med 2001, 48(4):283-292.
2. Brown IH, Ludwig S, Olsen CW, Hannoun C, Scholtissek C, Hinshaw VS, Harris PA, McCauley JW, Strong I, Alexander DJ. Antigenic and genetic analyses of H1N1 influenza A viruses from European pigs. J Gen Virol 1997, 78(3):553-562.
3. Gourreau JM, Kaiser C, Valette M, Douglas AR, Labie J, Aymard M. Isolation of two H1N2 influenza viruses from swine in France. Arch Virol 1994, 135(3-4):365-382. 10.1007/BF01310021, 7979974.
4. Olsen CW. The emergence of novel swine influenza viruses in North America. Virus Res 2002, 85(2):199-210. 10.1016/S0168-1702(02)00027-8, 12034486.
5. Richt JA, Lager KM, Janke BH, Woods RD, Webster RG, Webby RJ. Pathogenic and antigenic properties of phylogenetically distinct reassortant H3N2 swine influenza viruses cocirculating in the United States. J Clin Microbial 2003, 41(7):3198-3205.
6. Gatherer D. The 2009 H1N1 influenza outbreak in its historical context. J Clin Virol 2009, 45(3):174-178. 10.1016/j.jcv.2009.06.004, 19540156.
7. Brown IH. Swine influenza virus infection in pigs. Part 1: swine, avian and human influenza viruses. , http://www.pighealth.com/influenza.htm
8. Brown IH. The epidemiology and evolution of influenza viruses in pigs. Vet Microbial 2000, 74:, 29-46.
9. Dawood FS, Jain S, Finelli L, Shaw MW, Lindstrom S, Garten RJ, Gubareva LV, Xu X, Bridges CB, Uyeki TM. Novel Swine-Origin Influenza A (H1N1) Virus Investigation Team Emergence of a novel swine-origin influenza A (H1N1) virus in humans. N Engl J Med 2009, 360(25):2605-2615. Novel Swine-Origin Influenza A (H1N1) Virus Investigation Team.
10. Olsen CW, Brown I, Easterday BC, Van Reeth K. Swine influenza. Diseases of swine 2006, 469-482. Ames: Iowa State University Press, Straw BE, Zimmerman JJ, D'Allaire S, Taylor DJ, 9.
11. Loving CL, Brockmeier SL, Vincent AL, Palmer MV, Sacco RE, Nicholson TL. Influenza virus coinfection with Bordetella bronchiseptica enhances bacterial colonization and host responses exacerbating pulmonary lesions. Microb Pathog 2010, 49(5):237-245. 10.1016/j.micpath.2010.06.004, 20558274.
12. Jo SK, Kim HS, Cho SW, Seo SH. Pathogenesis and inflammatory responses of swine H1N2 influenza viruses in pigs. Virus Res 2007, 129(1):64-70. 10.1016/j.virusres.2007.05.005, 17570553.
13. Khatri M, Dwivedi V, Krakowka S, Manickam C, Ali A, Wang L, Qin Z, Renukaradhya GJ, Lee CW. Swine influenza H1N1 virus induces acute inflammatory immune responses in pig lungs: a potential animal model for human H1N1 influenza virus. J Virol 2010, 84(21):11210-11218. 10.1128/JVI.01211-10, 2953174, 20719941.
14. Barbe F, Saelens X, Braeckmans D, Lefevre F, Reeth KV. Role of IFN-alpha during the acute stage of a swine influenza virus infection. Res Vet Sci 88(1):172-178.
15. Kim B, Ahn KK, Ha Y, Lee YH, Kim D, Lim JH, Kim SH, Kim MY, Cho KD, Lee BH, Chae C. Association of tumor necrosis factor-alpha with fever and pulmonary lesion score in pigs experimentally infected with swine influenza virus subtype H1N2. J Vet Med Sci 2009, 71(5):611-616. 10.1292/jvms.71.611, 19498287.
16. Barbé F, Atanasova K, Van Reeth K. Cytokines and acute phase proteins associated with acute swine influenza infection in pigs. Vet J 2011, 187(1):48-53. 10.1016/j.tvjl.2009.12.012, 20097110.
17. Pallares FJ, Halbur PG, Opriessnig T, Sorden SD, Villar D, Janke BH, Yaeger MJ, Larson DJ, Schwartz KJ, Yoon KJ, Hoffman LJ. Porcine circovirus type 2 (PCV-2) coinfections in US field cases of postweaning multisystemic wasting syndrome (PMWS). J Vet Diagn Invest 2002, 14(6):515-519. 10.1177/104063870201400614, 12423038.
18. Yazawa S, Okada M, Ono M, Fujii S, Okuda Y, Shibata I, Kida H. Experimental dual infection of pigs with an H1N1 swine influenza virus (A/Sw/Hok/2/81) and Mycoplasma hyopneumoniae. Vet Microbiol 2004, 98(3-4):221-228. 10.1016/j.vetmic.2003.11.005, 15036530.
19. Loving CL, Brockmeier SL, Vincent AL, Palmer MV, Sacco RE, Nicholson TL. Influenza virus coinfection with Bordetella bronchiseptica enhances bacterial colonization and host responses exacerbating pulmonary lesions. Microb Pathog 2010, 49(5):237-245. 10.1016/j.micpath.2010.06.004, 20558274.
20. Shi Z, Sun J, Guo H, Tu C. Genomic expression profiling of peripheral blood leukocytes of pigs infected with highly virulent classical swine fever virus strain Shimen. J Gen Virol 2009, 90(7):1670-1680. 10.1099/vir.0.009415-0, 19264604.
21. Genini S, Delputte PL, Malinverni R, Cecere M, Stella A, Nauwynck HJ, Giuffra E. Genome-wide transcriptional response of primary alveolar macrophages following infection with porcine reproductive and respiratory syndrome virus. J Gen Virol 89(10):2550-2564.
22. Yewdell J, Garcia-Sastre A. Influenza virus still surprises. Curr Opin Microbio 2002, 5(4):414-418.
23. Li R, Zhang A, Chen B, Teng L, Wang Y, Chen H, Jin M. Response of swine spleen to Streptococcus suis infection revealed by transcription analysis. BMC Genomics 2010, 11:556. 10.1186/1471-2164-11-556, 3091705, 20937098.
24. Zhou H, Zhu J, Tu J, Zou W, Hu Y, Yu Z, Yin W, Li Y, Zhang A, Wu Y, Yu Z, Chen H, Jin M. Effect on virulence and pathogenicity of H5N1 influenza A virus through truncations of NS1 eIF4GI binding domain. J Infect Dis 2010, 202(9):1338-46. 10.1086/656536, 20854176.
25. Peiris JS, Cheung CY, Leung CY, Nicholls JM. Innate immune responses to influenza A H5N1: friend or foe?. Trends Immunol 2009, 30(12):574-584. 10.1016/j.it.2009.09.004, 19864182.
26. Yoneyama M, Kikuchi M, Natsukawa T, Shinobu N, Imaizumi T, Miyagishi M, Taira K, Akira S, Fujita T. The RNA helicase RIG-I has an essential function in double-stranded RNA-induced innate antiviral responses. Nature Immunol 2004, 5:730-737.
27. Krishnan J, Selvarajoo K, Tsuchiya M, Lee G, Choi S. Toll-like receptor signal transduction. Exp Mol Med 2007, 39(4):421-38.
28. Van Reeth K, Nauwynck H, Pensaert M. Bronchoalveolar interferon-alpha, tumor necrosis factor-alpha, interleukin-1, and inflammation during acute influenza in pigs: a possible model for humans?. J Infect Dis 1998, 177(4):1076-1079. 10.1086/517398, 9534986.
29. Takaoka A, Yanai H. Interferon signalling network in innate defense. Cellular microbiol 2006, 8(6):907-922.
30. Durbin JE, Fernandez-Sesma A, Lee CK, Rao TD, Frey AB, Moran TM, Vukmanovic S, Garcia-Sastre A, Levy DE. Type I IFN modulates innate and specific antiviral immunity. J Immunol 2000, 164(8):4220-4228.
31. Rowe T, Leon AJ, Crevar CJ, Carter DM, Xu L, Ran L, Fang Y, Cameron CM, Cameron MJ, Banner D, Ng DC, Ran R, Weirback HK, Wiley CA, Kelvin DJ, Ross TM. Modeling host responses in ferrets during A/California/07/2009 influenza infection. Virology 401(2):257-265.
32. Muhlbauer M, Fleck M, Schutz C, Weiss T, Froh M, Blank C, Scholmerich J, Hellerbrand C. PD-L1 is induced in hepatocytes by viral infection and by interferon-alpha and -gamma and mediates T cell apoptosis. J Hepatol 2006, 45(4):520-528. 10.1016/j.jhep.2006.05.007, 16876901.
33. Carter CC, Gorbacheva VY, Vestal DJ. Inhibition of VSV and EMCV replication by the interferon-induced GTPase, mGBP-2: differential requirement for wild-type GTP binding domain. Arch Virol 2005, 150(6):1213-1220. 10.1007/s00705-004-0489-2, 15717119.
34. Brass AL, Huang IC, Benita Y, John SP, Krishnan MN, Feeley EM, Ryan BJ, Weyer JL, van der Weyden L, Fikrig E, Adams DJ, Xavier RJ, Farzan M, Elledge SJ. The IFITM proteins mediate cellular resistance to influenza A H1N1 virus, West Nile virus, and dengue virus. Cell 2009, 139(7):1243-1254. 10.1016/j.cell.2009.12.017, 2824905, 20064371.
35. Kim M, Hwang S, Imaizumi T, Yoo J. Negative feedback regulation of RIG-I-mediated antiviral signaling by interferon-induced ISG15 conjugation. J Virol 2008, 82(3):1474-1483. 10.1128/JVI.01650-07, 2224411, 18057259.
36. Li Y, Li C, Xue P, Zhong B, Mao AP, Ran Y, Chen H, Wang YY, Yang F, Shu HB. ISG56 is a negative-feedback regulator of virus-triggered signaling and cellular antiviral response. Proc Natl Acad Sci USA 2009, 106(19):7945-7950. 10.1073/pnas.0900818106, 2683125, 19416887.
37. Malakhova OA, Kim KII, Luo J. UBP43 is a novel regulator of interferon signaling independent of its ISG15 isopeptidase activity. EMBO J 2006, 25(11):2358-2367. 10.1038/sj.emboj.7601149, 1478183, 16710296.
38. Yewdell JW, Bennink JR. Mechanisms of viral interference with MHC class I antigen processing and presentation. Annu Rev Cell Dev Biol 1999, 15:579-606. 10.1146/annurev.cellbio.15.1.579, 10611973.
39. Tong HH, Long JP, Li D, DeMaria TF. Alteration of gene expression in human middle ear epithelial cells induced by influenza A virus and its implication for the pathogenesis of otitis media. Microb Pathog 2004, 37(4):193-204. 10.1016/j.micpath.2004.06.012, 15458780.
40. Keeler CL, Bliss TW, Lavric M, Maughan MN. A functional genomics approach to the study of avian innate immunity. Cytogenet Genome Res 2007, 117(1-4):139-145. 10.1159/000103174, 17675854.
41. Fritz JH, Ferrero RL, Philpott DJ, Girardin SE. Nod-like proteins in immu- nity, inflammation and disease. Nat. Immunol 2006, 7:1250. 10.1038/ni1412, 17110941.
42. Cheung CY, Poon LL, Lau AS, Luk W, Lau YL, Shortridge KF, Gordon S, Guan Y, Peiris JS. Induction of proinflammatory cytokines in human macrophages by influenza A (H5N1) viruses: a mechanism for the unusual severity of human disease?. Lancet 2002, 360(9348):1831-1837. 10.1016/S0140-6736(02)11772-7, 12480361.
43. Julkunen I, Sareneva T, Pirhonen J, Ronni T, Melen K, Matikainen S. Molecular pathogenesis of influenza A virus infection and virus-induced regulation of cytokine gene expression. Cytokine Growth Factor Rev 2001, 12(2-3):171-180. 10.1016/S1359-6101(00)00026-5, 11325600.
44. Baskin CR, Bielefeldt-Ohmann H, Tumpey TM, Sabourin PJ, Long JP, Garcia-Sastre A, Tolnay AE, Albrecht R, Pyles JA, Olson PH. Early and sustained innate immune response defines pathology and death in nonhuman primates infected by highly pathogenic influenza virus. Proc Natl Acad Sci USA 2009, 106(9):3455-3460. 10.1073/pnas.0813234106, 2642661, 19218453.
45. Cameron CM, Cameron MJ, Bermejo-Martin JF, Ran L, Xu L, Turner PV, Ran R, Danesh A, Fang Y, Chan PK, Mytle N, Sullivan TJ, Collins TL, Johnson MG, Medina JC, Rowe T, Kelvin DJ. Gene expression analysis of host innate immune responses during Lethal H5N1 infection in ferrets. J Virol 2008, 82(22):11308-11317. 10.1128/JVI.00691-08, 2573250, 18684821.
46. Rosseau S, Hocke A, Mollenkopf H, Schmeck B, Suttorp N, Kaufmann SH, Zerrahn J. Comparative transcriptional profiling of the lung reveals shared and distinct features of Streptococcus pneumoniae and influenza A virus infection. Immunology 2007, 120(3):380-391. 10.1111/j.1365-2567.2006.02514.x, 2265881, 17163962.
47. Szretter KJ, Gangappa S, Lu X, Smith C, Shieh WJ, Zaki SR, Sambhara S, Tumpey TM, Katz JM. Role of host cytokine responses in the pathogenesis of avian H5N1 influenza viruses in mice. J Virol 2007, 81(6):2736-2744. 10.1128/JVI.02336-06, 1866007, 17182684.
48. Jo SK, Kim HS, Cho SW, Seo SH. Pathogenesis and inflammatory responses of swine H1N2 influenza viruses in pigs. Virus Res 2007, 129(1):64-70. 10.1016/j.virusres.2007.05.005, 17570553.
49. Neville LF, Mathiak G, Bagasra O. The immunobiology of interferon-gamma inducible protein 10 kD (IP-10): a novel, pleiotropic member of the C-X-C chemokine superfamily. Cytokine Growth Factor Rev 1997, 8(3):207-219. 10.1016/S1359-6101(97)00015-4, 9462486.
50. Luster AD. Chemokines--chemotactic cytokines that mediate inflammation. N Engl J Med 1998, 338(7):436-445. 10.1056/NEJM199802123380706, 9459648.
51. Zhou J, Law HK, Cheung CY, Ng IH, Peiris JS, Lau YL. Differential expression of chemokines and their receptors in adult and neonatal macrophages infected with human or avian influenza viruses. J Infect Dis 2006, 194(1):61-70. 10.1086/504690, 16741883.
52. Tracey DC, Melinda BA, William KA, Fred H, Nobuyo M. Contrasting Affects of CCR5 and CCR2 Deficiency in the Pulmonary Inflammatory Response to Influenza A Virus. Am J Pathol 2000, 156:1951-1959. 10.1016/S0002-9440(10)65068-7, 1850091, 10854218.
53. Herold S, von Wulffen W, Steinmueller M. Alveolar Epithelial Cells Direct Monocyte Transepithelial Migration upon Influenza Virus Infection: Impact of Chemokines and Adhesion Molecules. J Immunol 2006, 177(3):1817-1824.
54. Straus DS, Glass CK. Anti-inflammatory actions of PPAR ligands: new insights on cellular and molecular mechanisms. Trends Immunol 2007, 28(12):551-558. 10.1016/j.it.2007.09.003, 17981503.
55. Lam W, Yeung AC, Chu IM, Chan PK. Profiles of cytokine and chemokine gene expression in human pulmonary epithelial cells induced by human and avian influenza viruses. Virol J 2010, 7:344. 10.1186/1743-422X-7-344, 3002310, 21108843.
56. Dybing JK, Schultz-Cherry S, Swayne DE, Suarez DL, Perdue ML. Distinct pathogenesis of hong kong-origin H5N1 viruses in mice compared to that of other highly pathogenic H5 avian influenza viruses. J Virol 2000, 74(3):1443-1450. 10.1128/JVI.74.3.1443-1450.2000, 111479, 10627555.
57. Baumann H, Gauldie J. The acute phase response. Immunol Today 1994, 15(2):74-80. 10.1016/0167-5699(94)90137-6, 7512342.
58. Falsey AR, Walsh EE, Francis CW, Looney RJ, Kolassa JE, Hall WJ, Abraham GN. Response of C-reactive protein and serum amyloid A to influenza A infection in older adults. J Infect Dis 2001, 183(7):995-999. 10.1086/319275, 11237822.
59. Barclay GR, Flewett TH, Keller E, Halsall HB, Spragg SP. Effect of polymerized orosomucoid on some strains of influenza virus. Biochem J 1969, 111(3):353-357. 1187518, 5812940.
60. Ryan-Poirier KA, Kawaoka Y. Alpha 2-macroglobulin is the major neutralizing inhibitor of influenza A virus in pig serum. Virology 1993, 193(2):974-976. 10.1006/viro.1993.1208, 7681613.
61. Chen C, Zhang X, Lo C. The essentiality of alpha-2-macroglobulin in human salivary innate immunity against new H1N1 swine origin influenza A virus. Proteomics 2010, 10(12):2396-2401. 10.1002/pmic.200900775, 2890046, 20391540.
62. Graham MB, Braciale TJ. Resistance to and recovery from lethal influenza virus infection in B lymphocyte-deficient mice. J Exp Med 1997, 186:2063-2068. 10.1084/jem.186.12.2063, 2199163, 9396777.
63. Heinen PP, de Boer-Luijtze EA, Bianchi AT. Respiratory and systemic humoral and cellular immune responses of pigs to a heterosubtypic influenza A virus infection. J Gen Virol 2001, 82(Pt11):2697-2707.
64. Piriou-Guzylack L, Salmon H. Membrane markers of the immune cells in swine: an update. Vet Res 2008, 39(6):54. 10.1051/vetres:2008030, 18638439.