Structural basis of outer membrane protein biogenesis in bacteria

Journal of Biological Chemistry

Volumn 286, Issue 31, 2011, Pages 27792-27803

  Albrecht, Reinhard ^a   Zeth, Kornelius ^a  

^a MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

AMPHIPATHIC; BIOCHEMICAL DATA; CELL WALLS; ESSENTIAL COMPONENT; GENE DUPLICATIONS; INHIBITOR PROTEINS; LACTAMASES; MULTICOMPONENTS; OUTER MEMBRANE; OUTER MEMBRANE PROTEIN; PROTEIN DELIVERY; PROTEIN INTERACTION; PROTEIN MOTIFS; PROTEIN RECOGNITION; ROD-SHAPED; SPECIFIC RECOGNITION; STRUCTURAL BASIS; TETRATRICOPEPTIDE REPEATS;

BIOLOGICAL MEMBRANES; BIOSYNTHESIS; COMPLEXATION; ESCHERICHIA COLI; GENES; MACHINERY; SCAFFOLDS (BIOLOGY);

PROTEINS;

LIPOPROTEIN; OUTER MEMBRANE PROTEIN; PROTEIN BAMB; PROTEIN BAMC; PROTEIN BAMD; PROTEIN BAME; UNCLASSIFIED DRUG;

ARTICLE; BIOCHEMISTRY; BIOGENESIS; CARBOXY TERMINAL SEQUENCE; CONTROLLED STUDY; CRYSTAL STRUCTURE; CRYSTALLIZATION; ESCHERICHIA COLI; GEL PERMEATION CHROMATOGRAPHY; HYDROPHOBICITY; NONHUMAN; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN DEGRADATION; PROTEIN DOMAIN; PROTEIN MOTIF; PROTEIN PURIFICATION; PROTEIN STRUCTURE; SEQUENCE HOMOLOGY;

AMINO ACID SEQUENCE; BACTERIAL OUTER MEMBRANE PROTEINS; CRYSTALLOGRAPHY, X-RAY; ESCHERICHIA COLI; ESCHERICHIA COLI PROTEINS; MOLECULAR SEQUENCE DATA; PROTEIN CONFORMATION; SCATTERING, RADIATION;

ESCHERICHIA COLI;

EID: 79960974503     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M111.238931     Document Type: Article

References (63)

1. Knowles, T. J., Scott-Tucker, A., Overduin, M., and Henderson, I. R. (2009) Nat. Rev. Microbiol. 7, 206-214
2. Hagan, C. L., Silhavy, T. J., and Kahne, D. E. (2010) Annu. Rev. Biochem.
3. Tokuda, H., and Matsuyama, S. (2004) Biochim. Biophys. Acta. 1694, IN1-9
4. Tokuda, H. (2009) Biosci. Biotechnol. Biochem. 73, 465-473
5. Antonoaea, R., Fürst, M., Nishiyama, K., and Müller, M. (2008) Biochemistry 47, 5649-5656
6. Behrens-Kneip, S. (2010) Int. J. Med. Microbiol. 300, 421-428
7. Gatsos, X., Perry, A. J., Anwari, K., Dolezal, P., Wolynec, P. P., Likić, V. A., Purcell, A. W., Buchanan, S. K., and Lithgow, T. (2008) FEMS Microbiol. Rev. 32, 995-1009
8. Bos, M. P., Robert, V., and Tommassen, J. (2007) Annu. Rev. Microbiol. 61, 191-214
9. Bitto, E., and McKay, D. B. (2003) J. Biol. Chem. 278, 49316-49322
10. Xu, X., Wang, S., Hu, Y. X., and McKay, D. B. (2007) J. Mol. Biol. 373, 367-381
11. Ureta, A. R., Endres, R. G., Wingreen, N. S., and Silhavy, T. J. (2007) J. Bacteriol. 189, 446-454
12. Meng, G., Surana, N. K., St Geme, J. W., 3rd, and Waksman, G. (2006) EMBO J. 25, 2297-2304
13. Sklar, J. G., Wu, T., Gronenberg, L. S., Malinverni, J. C., Kahne, D., and Silhavy, T. J. (2007) Proc. Natl. Acad. Sci. U.S.A. 104, 6400-6405
14. Malinverni, J. C., Werner, J., Kim, S., Sklar, J. G., Kahne, D., Misra, R., and Silhavy, T. J. (2006) Mol. Microbiol. 61, 151-164
15. Xu, C., Lin, X., Ren, H., Zhang, Y., Wang, S., and Peng, X. (2006) Proteomics 6, 462-473
16. Kim, S., Malinverni, J. C., Sliz, P., Silhavy, T. J., Harrison, S. C., and Kahne, D. (2007) Science 317, 961-964
17. Jacob-Dubuisson, F., Villeret, V., Clantin, B., Delattre, A. S., and Saint, N. (2009) Biol. Chem. 390, 675-684
18. Clantin, B., Delattre, A. S., Rucktooa, P., Saint, N., Méli, A. C., Locht, C., Jacob-Dubuisson, F., and Villeret, V. (2007) Science 317, 957-961
19. Hagan, C. L., Kim, S., and Kahne, D. (2010) Science 328, 890-892
20. Vuong, P., Bennion, D., Mantei, J., Frost, D., and Misra, R. (2008) J. Bacteriol. 190, 1507-1517
21. de Cock, H., Struyvé, M., Kleerebezem, M., van der Krift, T., and Tommassen, J. (1997) J. Mol. Biol. 269, 473-478
22. Lehr, U., Schütz, M., Oberhettinger, P., Ruiz-Perez, F., Donald, J. W., Palmer, T., Linke, D., Henderson, I. R., and Autenrieth, I. B. (2010) Mol. Microbiol. 78, 932-946
23. Kutik, S., Stojanovski, D., Becker, L., Becker, T., Meinecke, M., Krüger, V., Prinz, C., Meisinger, C., Guiard, B., Wagner, R., Pfanner, N., and Wiedemann, N. (2008) Cell 132, 1011-1024
24. Walther, D. M., Rapaport, D., and Tommassen, J. (2009) Cell. Mol. Life Sci. 66, 2789-2804
25. Albrecht, R., and Zeth, K. (2010) Acta Crystallogr. Sect. F Struct. Biol. Cryst. Commun. 66, 1586-1590
26. Kabsch, W. (2010) Acta Crystallogr. D Biol. Crystallogr. 66, 133-144
27. Vonrhein, C., Blanc, E., Roversi, P., and Bricogne, G. (2007) Methods Mol. Biol. 364, 215-230
28. Cowtan, K. D., and Main, P. (1996) Acta Crystallogr. D Biol. Crystallogr. 52, 43-48
29. Long, F., Vagin, A. A., Young, P., and Murshudov, G. N. (2008) Acta Crystallogr. D Biol. Crystallogr. 64, 125-132
30. Emsley, P., Lohkamp, B., Scott, W. G., and Cowtan, K. (2010) Acta Crystallogr. D Biol. Crystallogr. 66, 486-501
31. Svergun, D. I. (1999) Biophys. J. 76, 2879-2886
32. Svergun, D. I., Barberato, C., Koch, M. H., Fetler, L., and Vachette, P. (1997) Proteins 27, 110-117
33. Gatzeva-Topalova, P. Z., Walton, T. A., and Sousa, M. C. (2008) Structure 16, 1873-1881
34. Poolman, J. T., de Marie, S., and Zanen, H. C. (1980) Infect. Immun. 30, 642-648
35. Frasch, C. E., and Mocca, L. F. (1978) J. Bacteriol. 136, 1127-1134
36. Stirnimann, C. U., Petsalaki, E., Russell, R. B., and Müller, C. W. (2010) Trends Biochem. Sci. 35, 565-574
37. Hao, B., Oehlmann, S., Sowa, M. E., Harper, J. W., and Pavletich, N. P. (2007) Mol. Cell 26, 131-143
38. Heuck, A., Schleiffer, A., and Clausen, T. (2011) J. Mol. Biol.
39. Kim, K. H., Kang, H. S., Okon, M., Escobar-Cabrera, E., McIntosh, L. P., and Paetzel, M. (2011) Biochemistry 50, 1081-1090
40. Kim, K. H., and Paetzel, M. (2010) J. Mol. Biol. 406, 667-678
41. Xiao, B., Heath, R., Saiu, P., Leiper, F. C., Leone, P., Jing, C., Walker, P. A., Haire, L., Eccleston, J. F., Davis, C. T., Martin, S. R., Carling, D., and Gamblin, S. J. (2007) Nature 449, 496-500
42. Gotthardt, K., Weyand, M., Kortholt, A., Van Haastert, P. J., and Wittinghofer, A. (2008) EMBO J. 27, 2239-2249
43. Jin, X., Townley, R., and Shapiro, L. (2007) Structure 15, 1285-1295
44. Liu, Y., and Eisenberg, D. (2002) Protein Sci. 11, 1285-1299
45. Knowles, T. J., Browning, D. F., Jeeves, M., Maderbocus, R., Rajesh, S., Sridhar, P., Manoli, E., Emery, D., Sommer, U., Spencer, A., Leyton, D. L., Squire, D., Chaudhuri, R. R., Viant, M. R., Cunningham, A. F., Henderson, I. R., and Overduin, M. (2011) EMBO Rep. 12, 123-128
46. Vanini, M. M., Spisni, A., Sforça, M. L., Pertinhez, T. A., and Benedetti, C. E. (2008) Proteins 71, 2051-2064
47. Gretes, M., Lim, D. C., de Castro, L., Jensen, S. E., Kang, S. G., Lee, K. J., and Strynadka, N. C. (2009) J. Mol. Biol. 389, 289-305
48. Reynolds, K. A., Thomson, J. M., Corbett, K. D., Bethel, C. R., Berger, J. M., Kirsch, J. F., Bonomo, R. A., and Handel, T. M. (2006) J. Biol. Chem. 281, 26745-26753
49. Scheufler, C., Brinker, A., Bourenkov, G., Pegoraro, S., Moroder, L., Bartunik, H., Hartl, F. U., and Moarefi, I. (2000) Cell 101, 199-210
50. Lunelli, M., Lokareddy, R. K., Zychlinsky, A., and Kolbe, M. (2009) Proc. Natl. Acad. Sci. U.S.A. 106, 9661-9666
51. Barta, M. L., Zhang, L., Picking, W. L., and Geisbrecht, B. V. (2010) BMC Struct. Biol. 10, 21
52. Gentle, I. E., Burri, L., and Lithgow, T. (2005) Mol. Microbiol. 58, 1216-1225
53. Charlson, E. S., Werner, J. N., and Misra, R. (2006) J. Bacteriol. 188, 7186-7194
54. Noinaj, N., Fairman, J. W., and Buchanan, S. K. (2011) J. Mol. Biol. 407, 248-260
55. Holm, L., and Rosenström, P. (2010) Nucleic Acids Res. 38, W545-549
56. Gatzeva-Topalova, P. Z., Warner, L. R., Pardi, A., and Sousa, M. C. (2010) Structure 18, 1492-1501
57. Karpenahalli, M. R., Lupas, A. N., and Söding, J. (2007) BMC Bioinformatics 8, 2
58. Soo, P. C., Wei, J. R., Horng, Y. T., Hsieh, S. C., Ho, S. W., and Lai, H. C. (2005) Infect. Immun. 73, 6075-6084
59. Strynadka, N. C., Jensen, S. E., Johns, K., Blanchard, H., Page, M., Matagne, A., Frère, J. M., and James, M. N. (1994) Nature 368, 657-660
60. Doran, J. L., Leskiw, B. K., Aippersbach, S., and Jensen, S. E. (1990) J. Bacteriol. 172, 4909-4918
61. Ryan, K. R., Taylor, J. A., and Bowers, L. M. (2010) Microbiology 156, 742-756
62. Glover, W. A., Yang, Y., and Zhang, Y. (2009) PLoS ONE 4, e7316
63. Fiser, A., and Sali, A. (2003) Methods Enzymol. 374, 461-491