Structure and function of BamE within the outer membrane and the β-barrel assembly machine

EMBO Reports

Volumn 12, Issue 2, 2011, Pages 123-128

  Knowles, Timothy J ^a   Browning, Douglas F ^a   Jeeves, Mark ^a   Maderbocus, Riyaz ^a   Rajesh, Sandya ^a   Sridhar, Pooja ^a   Manoli, Eleni ^a   Emery, Danielle ^a   Sommer, Ulf ^a   Spencer, Ashley ^a   Leyton, Denisse L ^a   Squire, Derrick ^a   Chaudhuri, Roy R ^a   Viant, Mark R ^a   Cunningham, Adam F ^a   Henderson, Ian R ^a   Overduin, Michael ^a  

^a UNIVERSITY OF BIRMINGHAM   (United Kingdom)

Author keywords

Bam complex; BamE; Omp85; outer membrane biogenesis; SmpA

Indexed keywords

BAME PROTEIN; MEMBRANE PROTEIN; PHOSPHATIDYLGLYCEROL; UNCLASSIFIED DRUG;

ANTIBIOTIC SENSITIVITY; ARTICLE; BETA SHEET; CELL VIABILITY; COMPLEX FORMATION; CYTOPLASM; GENE MUTATION; MUTAGENESIS; NONHUMAN; OUTER MEMBRANE; PRIORITY JOURNAL; PROTEIN ASSEMBLY; PROTEIN BINDING; PROTEIN CONFORMATION; PROTEIN FUNCTION; PROTEIN INTERACTION; PROTEIN STRUCTURE;

BACTERIAL OUTER MEMBRANE PROTEINS; BINDING SITES; ESCHERICHIA COLI PROTEINS; MAGNETIC RESONANCE SPECTROSCOPY; MUTAGENESIS, SITE-DIRECTED; MUTANT PROTEINS; PERIPLASMIC PROTEINS; PHOSPHATIDYLGLYCEROLS; PROTEIN BINDING; PROTEIN CONFORMATION; RECOMBINANT PROTEINS;

NEGIBACTERIA;

EID: 79551577091     PISSN: 1469221X     EISSN: 14693178     Source Type: Journal    
DOI: 10.1038/embor.2010.202     Document Type: Article

References (32)

1. Bos MP, Robert V, Tommassen J (2007) Biogenesis of the gram-negative bacterial outer membrane. Annu Rev Microbiol 61: 191-214
2. Cornilescu G, Delaglio F, Bax A (1999) Protein backbone angle restraints from searching a database for chemical shift and sequence homology. J Biomol NMR 13: 289-302
3. Delaglio F, Grzesiek S, Vuister GW, Zhu G, Pfeifer J, Bax A (1995) NMRPipe: a multidimensional spectral processing system based on UNIX pipes. J Biomol NMR 6: 277-293
4. Gatsos X, Perry AJ, Anwari K, Dolezal P, Wolynec PP, Likic VA, Purcell AW, Buchanan SK, Lithgow T (2008) Protein secretion and outer membrane assembly in Alphaproteobacteria. FEMS Microbiol Rev 32: 995-1009
5. Goddard TD, Kneller DG (2004) SPARKY 3. San Francisco, CA, USA: University of California
6. Guntert P (2004) Automated NMR structure calculation with CYANA. Methods Mol Biol 278: 353-378
7. Hagan CL, Kim S, Kahne D (2010) Reconstitution of outer membrane protein assembly from purified components. Science 328: 890-892
8. Hergenrother PJ, Martin SF (1997) Determination of the kinetic parameters for phospholipase C (Bacillus cereus) on different phospholipid substrates using a chromogenic assay based on the quantitation of inorganic phosphate. Anal Biochem 251: 45-49
9. Holm L, Park J (2000) DaliLite workbench for protein structure comparison. Bioinformatics 16: 566-567
10. Kim S, Malinverni JC, Sliz P, Silhavy TJ, Harrison SC, Kahne D (2007) Structure and function of an essential component of the outer membrane protein assembly machine. Science 317: 961-964
11. Knowles TJ, Jeeves M, Bobat S, Dancea F, McClelland D, Palmer T, Overduin M, Henderson IR (2008) Fold and function of polypeptide transport-associated domains responsible for delivering unfolded proteins to membranes. Mol Microbiol 68: 1216-1227
12. Knowles TJ, McClelland DM, Rajesh S, Henderson IR, Overduin M (2009a) Secondary structure and (1)H, (13)C and (15)N backbone resonance assignments of BamC, a component of the outer membrane protein assembly machinery in Escherichia coli. Biomol NMR Assign 3: 203-206
13. Knowles TJ, Scott-Tucker A, Overduin M, Henderson IR (2009b) Membrane protein architects: the role of the BAM complex in outer membrane protein assembly. Nat Rev Microbiol 7: 206-214
14. Knowles TJ, Sridhar P, Rajesh S, Manoli E, Overduin M, Henderson IR (2010) Secondary structure and (1)H, (13)C and (15)N resonance assignments of BamE, a component of the outer membrane protein assembly machinery in Escherichia coli. Biomol NMR Assign 4: 179-181
15. Koradi R, Billeter M, Wuthrich K (1996) MOLMOL: a program for display and analysis of macromolecular structures. J Mol Graph 14: 51-55, 29-32
16. Laskowski RA, MacArthur MW, Moss DS, Thornton JM (1993) PROCHECK: a program to check the stereochemical quality of protein structures. J Appl Crystallogr 26: 283-291
17. Lescop E, Schanda P, Brutscher B (2007) A set of BEST triple-resonance experiments for time-optimized protein resonance assignment. J Magn Reson 187: 163-169
18. 0Donoghue SI, Nilges M (2001) Automated assignment of ambiguous nuclear overhauser effects with ARIA. Methods Enzymol 339: 71-90
19. Malinverni JC, Werner J, Kim S, Sklar JG, Kahne D, Misra R, Silhavy TJ (2006) YfiO stabilizes the YaeT complex and is essential for outer membrane protein assembly in Escherichia coli. Mol Microbiol 61: 151-164
20. Narita S, Matsuyama S, Tokuda H (2004) Lipoprotein trafficking in Escherichia coli. Arch Microbiol 182: 1-6
21. Ochsner UA, Vasil AI, Johnson Z, Vasil ML (1999) Pseudomonas aeruginosa fur overlaps with a gene encoding a novel outer membrane lipoprotein, OmlA. J Bacteriol 181: 1099-1109
22. Patel GJ, Behrens-Kneip S, Holst O, Kleinschmidt JH (2009) The periplasmic chaperone Skp facilitates targeting, insertion, and folding of OmpA into lipid membranes with a negative membrane surface potential. Biochemistry 48: 10235-10245
23. Ruiz N, Falcone B, Kahne D, Silhavy TJ (2005) Chemical conditionality: a genetic strategy to probe organelle assembly. Cell 121: 307-317
24. Schanda P, Van Melckebeke H, Brutscher B (2006) Speeding up three-dimensional protein NMR experiments to a few minutes. J Am Chem Soc 128: 9042-9043
25. Sklar JG, Wu T, Gronenberg LS, Malinverni JC, Kahne D, Silhavy TJ (2007) Lipoprotein SmpA is a component of the YaeT complex that assembles outer membrane proteins in Escherichia coli. Proc Natl Acad Sci USA 104: 6400-6405
26. Tan CA, Roberts MF (1996) Vanadate is a potent competitive inhibitor of phospholipase C from Bacillus cereus. Biochim Biophys Acta 1298: 58-68
27. Vanini MM, Spisni A, Sforca ML, Pertinhez TA, Benedetti CE (2008) The solution structure of the outer membrane lipoprotein OmlA from Xanthomonas axonopodis pv. citri reveals a protein fold implicated in protein-protein interaction. Proteins 71: 2051-2064
28. Vanounou S, Parola AH, Fishov I (2003) Phosphatidylethanolamine and phosphatidylglycerol are segregated into different domains in bacterial membrane. A study with pyrene-labelled phospholipids. Mol Microbiol 49: 1067-1079
29. Voulhoux R, Bos MP, Geurtsen J, Mols M, Tommassen J (2003) Role of a highly conserved bacterial protein in outer membrane protein assembly. Science 299: 262-265
30. Vranken WF, Boucher W, Stevens TJ, Fogh RH, Pajon A, Llinas M, Ulrich EL, Markley JL, Ionides J, Laue ED (2005) The CCPN data model for NMR spectroscopy: development of a software pipeline. Proteins 59: 687-696
31. Vuong P, Bennion D, Mantei J, Frost D, Misra R (2008) Analysis of YfgL and YaeT interactions through bioinformatics, mutagenesis, and biochemistry. J Bacteriol 190: 1507-1517
32. Wu T, Malinverni J, Ruiz N, Kim S, Silhavy TJ, Kahne D (2005) Identification of a multicomponent complex required for outer membrane biogenesis in Escherichia coli. Cell 121: 235-245