On the routine use of soft X-rays in macromolecular crystallography. Part V. Molecular replacement and anomalous scattering

Acta Crystallographica Section D: Biological Crystallography

Volumn 67, Issue 8, 2011, Pages 729-738

  Unge, Johan ^a,b   Mueller Dieckmann, Christoph ^a,c   Panjikar, Santosh ^a   Tucker, Paul A ^a   Lamzin, Victor S ^a   Weiss, Manfred S ^a,d  

^a DESY   (Germany)

^b LUND UNIVERSITY   (Sweden)

^c EUROPEAN SYNCHROTRON RADIATION FACILITY   (France)

^d HAHN MEITNER INSTITUT   (Germany)

Author keywords

anomalous scattering; molecular replacement; soft X rays

Indexed keywords

PROTEIN;

ANIMAL; ARTICLE; CHEMICAL STRUCTURE; HUMAN; METHODOLOGY; PROTEIN TERTIARY STRUCTURE; X RAY CRYSTALLOGRAPHY;

ANIMALS; CRYSTALLOGRAPHY, X-RAY; HUMANS; MODELS, MOLECULAR; PROTEIN STRUCTURE, TERTIARY; PROTEINS;

EID: 79960962812     PISSN: 09074449     EISSN: 13990047     Source Type: Journal    
DOI: 10.1107/S0907444911024887     Document Type: Article

References (49)

1. Altschul, S. F., Gish, W., Miller, W., Myers, E. W. & Lipman, D. J. (1990). J. Mol. Biol. 215, 403-410.
2. Anderson, D. H., Weiss, M. S. & Eisenberg, D. (1996). Acta Cryst. D52, 469-480.
3. Baker, E. N., Anderson, B. F., Dobbs, A. J. & Dodson, E. J. (1995). Acta Cryst. D51, 282-289.
4. Berglund, G. I., Willassen, N. P., Hordvik, A. & Smalas, A. O. (1995). Acta Cryst. D51, 925-937.
5. Berman, H. M., Westbrook, J., Feng, Z., Gilliland, G., Bhat, T. N., Weissig, H., Shindyalov, I. N. & Bourne, P. E. (2000). Nucleic Acids Res. 28, 235-242.
6. Blow, D. M. (1958). Proc. R. Soc. Lond. A, 247, 302-336.
7. Bricogne, G. (1992). Proceedings of the CCP4 Study Weekend. Molecular Replacement, edited by W. Wolf, E. J. Dodson & S. Gover, pp. 62-75. Warrington: Daresbury Laboratory.
8. Bricogne, G. (1997). Methods Enzymol. 276, 361-423.
9. Chothia, C. (1992). Nature (London), 357, 543-544.
10. Chothia, C. & Lesk, A. M. (1986). EMBO J. 5, 823-826.
11. Dauter, Z., Dauter, M., de La Fortelle, E., Bricogne, G. & Sheldrick, G. M. (1999). J. Mol. Biol. 289, 83-92.
12. DeLano, W. L. & Brünger, A. T. (1995). Acta Cryst. D51, 740-748.
13. Djinović Carugo, K., Helliwell, J. R., Stuhrmann, H. & Weiss, M. S. (2005). J. Synchrotron Rad. 12, 410-419.
14. Einspahr, H., Suguna, K., Suddath, F. L., Ellis, G., Helliwell, J. R. & Papiz, M. Z. (1985). Acta Cryst. B41, 336-341.
15. Ferreira, K. N., Iverson, T. M., Maghlaoui, K., Barber, J. & Iwata, S. (2004). Science, 303, 1831-1838.
16. Gomis-Rüth, F. X., Gómez, M., Bode, W., Huber, R. & Avilé s, F. X. (1995). EMBO J. 14, 4387-4394.
17. Hendrickson, W. A. & Teeter, M. M. (1981). Nature (London), 290, 107-113.
18. Huber, R. (1965). Acta Cryst. 19, 353-356.
19. Keegan, R. M. & Winn, M. D. (2007). Acta Cryst. D63, 447-457.
20. Kleywegt, G. J. (1996). Jnt CCP4/ESF-EACBM Newsl. Protein Crystallogr. 32, 32-36.
21. Kuettner, E. B., Hilgenfeld, R. & Weiss, M. S. (2002). J. Biol. Chem. 277, 46402-46407.
22. Kwiatkowski, W., Noel, J. P. & Choe, S. (2000). J. Appl. Cryst. 33, 876-881.
23. Liu, X., Fan, K. & Wang, W. (2004). Proteins, 54, 491-499.
24. Liu, Z.-J., Vysotski, E. S., Chen, C.-J., Rose, J. P., Lee, J. & Wang, B.-C. (2000). Protein Sci. 9, 2085-2093.
25. Long, F., Vagin, A. A., Young, P. & Murshudov, G. N. (2008). Acta Cryst. D64, 125-132.
26. Madauss, K., Juzumiene, D., Waitt, G., Williams, J. & Williams, S. (2004). Endocr. Res. 30, 775-785.
27. McCoy, A. J., Grosse-Kunstleve, R. W., Adams, P. D., Winn, M. D., Storoni, L. C. & Read, R. J. (2007). J. Appl. Cryst. 40, 658-674.
28. Mueller-Dieckmann, C., Panjikar, S., Schmidt, A., Mueller, S., Kuper, J., Geerlof, A., Wilmanns, M., Singh, R. K., Tucker, P. A. & Weiss, M. S. (2007). Acta Cryst. D63, 366-380.
29. Mueller-Dieckmann, C., Panjikar, S., Tucker, P. A. & Weiss, M. S. (2005). Acta Cryst. D61, 1263-1272.
30. Mueller-Dieckmann, C., Polentarutti, M., Djinovic Carugo, K., Panjikar, S., Tucker, P. A. & Weiss, M. S. (2004). Acta Cryst. D60, 28-38.
31. Murzin, A. G., Brenner, S. E., Hubbard, T. & Chothia, C. (1995). J. Mol. Biol. 247, 536-540.
32. Nan, J., Zhou, Y., Yang, C., Brostromer, E., Kristensen, O. & Su, X.-D. (2009). Acta Cryst. D65, 440-448.
33. Navaza, J. (1987). Acta Cryst. A43, 645-653.
34. Navaza, J. (2001). Acta Cryst. D57, 1367-1372.
35. Panjikar, S., Parthasarathy, V., Lamzin, V. S., Weiss, M. S. & Tucker, P. A. (2005). Acta Cryst. D61, 449-457.
36. Panjikar, S., Parthasarathy, V., Lamzin, V. S., Weiss, M. S. & Tucker, P. A. (2009). Acta Cryst. D65, 1089-1097.
37. Pereira, P. J., Bergner, A.,Macedo-Ribeiro, S., Huber, R., Matschiner, G., Fritz, H., Sommerhoff, C. P. & Bode, W. (1998). Nature (London), 392, 306-311.
38. Raaf, J., Issinger, O. G. & Niefind, K. (2008). Mol. Cell. Biochem. 316, 15-23.
39. Read, R. J. (2001). Acta Cryst. D57, 1373-1382.
40. Rossmann, M. G. & Blow, D. M. (1962). Acta Cryst. 15, 24-31.
41. Schuermann, J. P. & Tanner, J. J. (2003). Acta Cryst. D59, 1731-1736.
42. Sekar, K., Rajakannan, V., Velmurugan, D., Yamane, T., Thirumurugan, R., Dauter, M. & Dauter, Z. (2004). Acta Cryst. D60, 1586-1590.
43. Weiss, M. S. (2001). J. Appl. Cryst. 34, 130-135.
44. Weiss, M. S., Panjikar, S., Nowak, E. & Tucker, P. A. (2002). Acta Cryst. D58, 1407-1412.
45. Weiss, M. S., Sicker, T., Djinovic-Carugo, K. & Hilgenfeld, R. (2001). Acta Cryst. D57, 689-695.
46. Weiss, M. S., Sicker, T. & Hilgenfeld, R. (2001). Structure, 9, 771-777.
47. Williams, S. G. & Lovell, S. C. (2009). Mol. Biol. Evol. 26, 1055-1065.
48. Winn, M. D. et al. (2011). Acta Cryst. D67, 235-242.
49. Yang, C., Pflugrath, J. W., Courville, D. A., Stence, C. N. & Ferrara, J. D. (2003). Acta Cryst. D59, 1943-1957.