Pushing the boundaries of molecular replacement with maximum likelihood

Acta Crystallographica - Section D Biological Crystallography

Volumn 57, Issue 10, 2001, Pages 1373-1382

  Read, Randy J ^a  

^a UNIVERSITY OF CAMBRIDGE   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

DIHYDROFOLATE REDUCTASE; TRYPSIN;

ARTICLE; CALIBRATION; CHEMICAL MODEL; CHEMICAL STRUCTURE; CHEMISTRY; COMPUTER PROGRAM; CRYSTALLOGRAPHY; HALOFERAX VOLCANII; MULTIVARIATE ANALYSIS; STATISTICAL MODEL; STREPTOMYCES GRISEUS;

CALIBRATION; CRYSTALLOGRAPHY; HALOFERAX VOLCANII; LIKELIHOOD FUNCTIONS; MODELS, CHEMICAL; MODELS, MOLECULAR; MULTIVARIATE ANALYSIS; SOFTWARE; STREPTOMYCES GRISEUS; TETRAHYDROFOLATE DEHYDROGENASE; TRYPSIN;

HALOFERAX VOLCANII; STREPTOMYCES GRISEUS;

EID: 0035788107     PISSN: 09074449     EISSN: None     Source Type: Journal    
DOI: 10.1107/S0907444901012471     Document Type: Article

References (45)

1. Adams, P. D., Pannu, N. S., Read, R. J. & Brünger, A. T. (1997). Proc. Natl Acad. Sci. USA, 94, 5018-5023.
2. Bricogne, G. (1992). Proceedings of the CCP4 Study Weekend. Molecular Replacement, edited by W. Wolf, E. J. Dodson & S. Gover, pp. 62-75. Warrington: Daresbury Laboratory.
3. Bricogne, G. (1997). Methods Enzymol. 276, 361-423.
4. Bricogne, G. & Irwin, J. (1996). Proceedings of the CCP4 Study Weekend. Macromolecular Refinement, edited by E. Dodson, M. Moore, A. Ralph & S. Bailey, pp. 85-92. Warrington: Daresbury Laboratory.
5. Brünger, A. T. (1992). X-PLOR. Version 3.1. A System for X-ray Crystallography and NMR. Yale University, Connecticut, USA.
6. Brunger, A. T., Adams, P. D., Clore, G. M., DeLano, W. L., Gros, P., Grosse-Kunstleve, R. W., Jiang, J.-S., Kuszewski, J., Nilges, M., Pannu, N. S., Read, R. J., Rice, L. M., Simonson, T. & Warren, G. L. (1998). Acta Cryst. D54, 905-921.
7. Chambers, J. L. & Stroud, R. M. (1979). Acta Cryst. B35, 1861-1874.
8. Chang, G. & Lewis, M. (1997). Acta Cryst. D53, 279-289.
9. Chothia, C. & Lesk, A. M. (1986). EMBO J. 5, 823-826.
10. Collaborative Computational Project, Number 4 (1994). Acta Cryst. D50, 760-763.
11. Crowther, R. A. (1972). The Molecular Replacement Method, edited by M. G. Rossmann, pp. 173-178. New York: Gordon & Breach.
12. Declercq, R. (2000). PhD thesis, Katholieke Universiteit Leuven, Leuven, Belgium.
13. Fujinaga, M. & Read, R. J. (1987). J. Appl. Cryst. 20, 517-521.
14. Glykos, N. M. & Kokkinidis, M. (2000). Acta Cryst. D56, 169-174.
15. Johnson, R. A. & Wichern, D. W. (1998). Applied Multivariate Statistical Analysis, 4th ed. Upper Saddle River, NJ, USA: Prentice Hall.
16. Kissinger, C. R., Gehlhaar, D. K. & Fogel, D. B. (1999). Acta Cryst. D55, 484-491.
17. Klug, A. (1958). Acta Cryst. 11, 515-543.
18. La Fortelle, E. de & Bricogne, G. (1997). Methods Enzymol. 276, 472-494.
19. Lattman, E. E. (1972). The Molecular Replacement Method, edited by M. G. Rossmann, pp. 179-185. New York: Gordon & Breach.
20. Lunin, V. Y. & Urzhumtsev, A. G. (1984). Acta Cryst. A40, 269-277.
21. Luzzati, V. (1952). Acta Cryst. 5, 802-810.
22. Murshudov, G. N., Vagin, A. A. & Dodson, E. J. (1997). Acta Cryst. D53, 240-255.
23. Navaza, J. (1994). Acta Cryst. A50, 157-163.
24. Navaza, J., Panepucci, E. H. & Martin, C. (1998). Acta Cryst. D54, 817-821.
25. Pannu, N. S., Murshudov, G. N., Dodson, E. J. & Read, R. J. (1998). Acta Cryst. D54, 1285-1294.
26. Pannu, N. S. & Read, R. J. (1996). Acta Cryst. A52, 659-668.
27. Pieper, U., Kapadia, G., Mevarech, M. & Herzberg, O. (1998). Structure, 6, 75-88.
28. Read, R. J. (1986). Acta Cryst. A42, 140-149.
29. Read, R. J. (1990). Acta Cryst. A46, 900-912.
30. Read, R. J. (1997). Methods Enzymol. 277, 110-128.
31. Read, R. J. (1999). XVIIIth IUCr Congress and General Assembly. Abstract No. M07.0A.002.
32. Read, R. J., Hart, T. N., Cummings, M. D. & Ness, S. R. (1995). Supramol. Chem. 6, 135-140.
33. Read, R. J. & James, M. N. G. (1988). J. Mol. Biol. 200, 523-551.
34. Rossmann, M. G. (1972). The Molecular Replacement Method. New York: Gordon & Breach.
35. Rossmann, M. G. & Blow, D. M. (1962). Acta Cryst. 15, 24-31.
36. Sheriff, S., Klei, H. E. & Davis, M. E. (1999). J. Appl. Cryst. 32, 98-101.
37. Shmueli, U. & Weiss, G. H. (1995). Introduction to Crystallographic Statistics. Oxford University Press.
38. Shmueli, U., Weiss, G. H., Kiefer, J. E. & Wilson, A. J. C. (1984). Acta Cryst. A40, 651-660.
39. Sim, G. A. (1959). Acta Cryst. 12, 813-815.
40. Srinivasan, R. & Chandrasekaran, R. (1966). Indian J. Pure Appl. Phys. 4, 178-186.
41. Tsoucaris, G. (1970). Acta Cryst. A26, 492-499.
42. Wilson, A. J. C. (1949). Acta Cryst. 2, 318-321.
43. Wooding, R. A. (1956). Biometrika, 43, 212-215.
44. Woolfson, M. M. (1956). Acta Cryst. 9, 804-810.
45. Yano, J. K., Koo, L. S., Schuller, D. J., Li, H., Ortiz de Montellano, P. R. & Poulos, T. L. (2000). J. Biol. Chem. 275, 31086-31092.