Fast flexible modeling of RNA structure using internal coordinates

IEEE/ACM Transactions on Computational Biology and Bioinformatics

Volumn 8, Issue 5, 2011, Pages 1247-1257

  Flores, Samuel Coulbourn ^a   Sherman, Michael A ^b   Bruns, Christopher M ^b   Eastman, Peter ^b   Altman, Russ Biagio ^b  

^a UPPSALA UNIVERSITY   (Sweden)

^b Stanford University   (United States)

Author keywords

dynamics; Internal coordinate mechanics; linear; modeling; molecular; prediction; RNA; scaling; structure

Indexed keywords

APPLIED FORCES; COARSE-GRAINED MODELING; COMPUTATIONAL EXPENSE; CRITICAL CHALLENGES; INTERNAL COORDINATES; LINEAR; MODEL CONSTRUCTION; MOLECULAR; MOLECULAR DYNAMICS SIMULATIONS; MOLECULAR MODELING ALGORITHMS; MOVING PARTS; PHYSICS-BASED; RNA MOLECULES; RNA STRUCTURES; SCALING; SECONDARY STRUCTURES; STRUCTURE AND DYNAMICS; TIME REQUIREMENTS;

ATOMS; COMPUTER SIMULATION; DIHEDRAL ANGLE; DYNAMICS; LIBRARIES; MOLECULAR DYNAMICS; MOLECULES;

RNA;

RNA;

ALGORITHM; ARTICLE; BIOLOGICAL MODEL; BIOLOGY; CHEMISTRY; COMPUTER PROGRAM; CONFORMATION; METHODOLOGY; MOLECULAR DYNAMICS; STATISTICAL MODEL; TEMPERATURE; TETRAHYMENA;

ALGORITHMS; COMPUTATIONAL BIOLOGY; LINEAR MODELS; MODELS, GENETIC; MOLECULAR DYNAMICS SIMULATION; NUCLEIC ACID CONFORMATION; RNA; SOFTWARE; TEMPERATURE; TETRAHYMENA;

EID: 79960896331     PISSN: 15455963     EISSN: None     Source Type: Journal    
DOI: 10.1109/TCBB.2010.104     Document Type: Article

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