-
1
-
-
0034637111
-
The complete atomic structure of the large ribosomal subunit at 2.4 a resolution
-
Ban, N. et al. (2000) The complete atomic structure of the large ribosomal subunit at 2.4 a resolution. Science, 289, 905-920.
-
(2000)
Science
, vol.289
, pp. 905-920
-
-
Ban, N.1
-
2
-
-
0029820625
-
Crystal structure of a group I ribozyme domain: principles of RNA packing
-
Cate, J.H. et al. (1996) Crystal structure of a group I ribozyme domain: principles of RNA packing. Science, 273, 1678-1685.
-
(1996)
Science
, vol.273
, pp. 1678-1685
-
-
Cate, J.H.1
-
3
-
-
0030051966
-
Geometric parameters in nucleic acids: nitrogenous bases
-
Clowney, L. et al. (1996) Geometric parameters in nucleic acids: nitrogenous bases. J. Am. Chem. Soc., 118, 509-518.
-
(1996)
J. Am. Chem. Soc.
, vol.118
, pp. 509-518
-
-
Clowney, L.1
-
4
-
-
35548950310
-
Automated de novo prediction of native-like RNA tertiary structures
-
Das, R. and Baker, D. (2007) Automated de novo prediction of native-like RNA tertiary structures. Proc. Natl Acad. Sci. USA, 104, 14664-14669.
-
(2007)
Proc. Natl Acad. Sci. USA
, vol.104
, pp. 14664-14669
-
-
Das, R.1
Baker, D.2
-
5
-
-
41949089022
-
Structural inference of native and partially folded RNA by high-throughput contact mapping
-
Das, R. et al. (2008) Structural inference of native and partially folded RNA by high-throughput contact mapping. Proc. Natl Acad. Sci. USA, 105, 4144-4149.
-
(2008)
Proc. Natl Acad. Sci. USA
, vol.105
, pp. 4144-4149
-
-
Das, R.1
-
6
-
-
34547592557
-
MolProbity: all-atom contacts and structure validation for proteins and nucleic acids
-
Davis, I.W. et al. (2007) MolProbity: all-atom contacts and structure validation for proteins and nucleic acids. Nucleic Acids Res., 35 (Suppl. 2), W375-W383.
-
(2007)
Nucleic Acids Res.
, vol.35
, Issue.SUPPL. 2
-
-
Davis, I.W.1
-
7
-
-
68349126026
-
Structural and electrostatic characterization of pariacoto virus: implications for viral assembly
-
Devkota, B. et al. (2009) Structural and electrostatic characterization of pariacoto virus: implications for viral assembly. Biopolymers, 91, 530-538.
-
(2009)
Biopolymers
, vol.91
, pp. 530-538
-
-
Devkota, B.1
-
8
-
-
44149101971
-
Ab initio RNA folding by discrete molecular dynamics: from structure prediction to folding mechanisms
-
Ding, F. et al. (2008) Ab initio RNA folding by discrete molecular dynamics: from structure prediction to folding mechanisms. RNA, 14, 1164-1173.
-
(2008)
RNA
, vol.14
, pp. 1164-1173
-
-
Ding, F.1
-
9
-
-
0030071775
-
Geometric parameters in nucleic acids: sugar and phosphate constituents
-
Gelbin, A. et al. (1996) Geometric parameters in nucleic acids: sugar and phosphate constituents. J. Am. Chem. Soc., 118, 519-529.
-
(1996)
J. Am. Chem. Soc.
, vol.118
, pp. 519-529
-
-
Gelbin, A.1
-
10
-
-
11444263264
-
Crystal structure of a phage twort group I ribozyme-product complex
-
Golden, B.L. et al. (2005) Crystal structure of a phage twort group I ribozyme-product complex. Nat. Struct. Mol. Biol., 12, 82-89.
-
(2005)
Nat. Struct. Mol. Biol.
, vol.12
, pp. 82-89
-
-
Golden, B.L.1
-
11
-
-
0021013526
-
The RNA moiety of ribonuclease P is the catalytic subunit of the enzyme
-
Guerrier-Takada, C. et al. (1983) The RNA moiety of ribonuclease P is the catalytic subunit of the enzyme. Cell, 35(Pt 2), 849-857.
-
(1983)
Cell
, vol.35
, Issue.PT 2
, pp. 849-857
-
-
Guerrier-Takada, C.1
-
12
-
-
58249111738
-
Coarse-grained modeling of large RNA molecules with knowledge-based potentials and structural filters
-
Jonikas, M.A. et al. (2009) Coarse-grained modeling of large RNA molecules with knowledge-based potentials and structural filters. RNA, 15, 189-199.
-
(2009)
RNA
, vol.15
, pp. 189-199
-
-
Jonikas, M.A.1
-
13
-
-
0020417286
-
Self-splicing RNA: autoexcision and autocyclization of the ribosomal RNA intervening sequence of Tetrahymena
-
Kruger, K. et al. (1982) Self-splicing RNA: autoexcision and autocyclization of the ribosomal RNA intervening sequence of Tetrahymena. Cell, 31, 147-57.
-
(1982)
Cell
, vol.31
, pp. 147-157
-
-
Kruger, K.1
-
14
-
-
0030452773
-
New loop-loop tertiary interactions in self-splicing introns of subgroup IC and ID: a complete 3D model of the tetrahymena thermophila ribozyme
-
Lehnert, V. et al. (1996) New loop-loop tertiary interactions in self-splicing introns of subgroup IC and ID: a complete 3D model of the tetrahymena thermophila ribozyme. Chem. Biol., 3, 993-1009.
-
(1996)
Chem. Biol.
, vol.3
, pp. 993-1009
-
-
Lehnert, V.1
-
15
-
-
0014688034
-
Detailed molecular model for transfer ribonucleic acid
-
Levitt, M. (1969) Detailed molecular model for transfer ribonucleic acid. Nature, 224, 759-763.
-
(1969)
Nature
, vol.224
, pp. 759-763
-
-
Levitt, M.1
-
16
-
-
0037441653
-
Structure validation by calpha geometry: phi, psi and cbeta deviation
-
Lovell, S.C. et al. (2003) Structure validation by calpha geometry: phi, psi and cbeta deviation. Proteins: Structure, Function, and Genetics, 50, 437-450.
-
(2003)
Proteins: Structure, Function, and Genetics
, vol.50
, pp. 437-450
-
-
Lovell, S.C.1
-
17
-
-
0027366671
-
Reproducing the three-dimensional structure of a TRNAmolecule from structural constraints
-
Major, F. et al. (1993) Reproducing the three-dimensional structure of a TRNAmolecule from structural constraints. Proc. Natl Acad. Sci. USA, 90, 9408-9412.
-
(1993)
Proc. Natl Acad. Sci. USA
, vol.90
, pp. 9408-9412
-
-
Major, F.1
-
18
-
-
0028338898
-
Modeling large RNAS and ribonucleoprotein particles using molecular mechanics techniques
-
Malhotra, A. et al. (1994) Modeling large RNAS and ribonucleoprotein particles using molecular mechanics techniques. Biophys. J., 66, 1777-1795.
-
(1994)
Biophys. J.
, vol.66
, pp. 1777-1795
-
-
Malhotra, A.1
-
19
-
-
43749124906
-
RNA2D3D: a program for generating, viewing, and comparing 3-dimensional models of RNA
-
Martinez, H.M. et al. (2008) RNA2D3D: a program for generating, viewing, and comparing 3-dimensional models of RNA. J. Biomol. Struct. Dyn., 25, 669-683.
-
(2008)
J. Biomol. Struct. Dyn.
, vol.25
, pp. 669-683
-
-
Martinez, H.M.1
-
20
-
-
0032232529
-
MANIP: an interactive tool for modelling RNA
-
255-257
-
Massire, C. and Westhof, E. (1998) MANIP: an interactive tool for modelling RNA. J. Mol. Graph Model, 16, 197-205, 255-257.
-
(1998)
J. Mol. Graph Model
, vol.16
, pp. 197-205
-
-
Massire, C.1
Westhof, E.2
-
21
-
-
0025678737
-
Modelling of the three-dimensional architecture of group I catalytic introns based on comparative sequence analysis
-
Michel, F. and Westhof, E. (1990) Modelling of the three-dimensional architecture of group I catalytic introns based on comparative sequence analysis. J. Mol. Biol., 216, 585-610.
-
(1990)
J. Mol. Biol.
, vol.216
, pp. 585-610
-
-
Michel, F.1
Westhof, E.2
-
22
-
-
0036753365
-
Genetic control by a metabolite binding mRNA
-
Nahvi, A. et al. (2002) Genetic control by a metabolite binding mRNA. Chem. Biol., 9, 1043.
-
(2002)
Chem. Biol.
, vol.9
, pp. 1043
-
-
Nahvi, A.1
-
23
-
-
40449139010
-
The MC-fold and MC-Sym pipeline infers RNA structure from sequence data
-
Parisien, M. and Major, F. (2008). The MC-fold and MC-Sym pipeline infers RNA structure from sequence data. Nature, 452, 51-55.
-
(2008)
Nature
, vol.452
, pp. 51-55
-
-
Parisien, M.1
Major, F.2
-
24
-
-
70349149051
-
New metrics for comparing and assessing discrepancies between RNA 3D structures and models
-
Parisien, M. et al. (2009) New metrics for comparing and assessing discrepancies between RNA 3D structures and models. RNA, 15, 1875-1885.
-
(2009)
RNA
, vol.15
, pp. 1875-1885
-
-
Parisien, M.1
-
25
-
-
50549096615
-
iFoldRNA: three-dimensional RNA structure prediction and folding
-
Sharma, S. et al. (2008) iFoldRNA: three-dimensional RNA structure prediction and folding. Bioinformatics, 24, 1951-1952.
-
(2008)
Bioinformatics
, vol.24
, pp. 1951-1952
-
-
Sharma, S.1
-
26
-
-
0031585984
-
Assembly of protein tertiary structures from fragments with similar local sequences using simulated annealing and Bayesian scoring functions
-
Simons, K.T. et al. (1997) Assembly of protein tertiary structures from fragments with similar local sequences using simulated annealing and Bayesian scoring functions. J. Mol. Biol., 268, 209-225.
-
(1997)
J. Mol. Biol.
, vol.268
, pp. 209-225
-
-
Simons, K.T.1
-
27
-
-
24644492337
-
Structural evidence for a two-metal-ion mechanism of group I intron splicing
-
Stahley, M.R. and Strobel, S.A. (2005) Structural evidence for a two-metal-ion mechanism of group I intron splicing. Science, 309, 1587-1590.
-
(2005)
Science
, vol.309
, pp. 1587-1590
-
-
Stahley, M.R.1
Strobel, S.A.2
-
28
-
-
0017855369
-
Ribonuclease P: an enzyme with an essential RNA component
-
Stark, B.C. et al. (1978) Ribonuclease P: an enzyme with an essential RNA component. Proc. Natl Acad. Sci. USA, 75, 3717-3721.
-
(1978)
Proc. Natl Acad. Sci. USA
, vol.75
, pp. 3717-3721
-
-
Stark, B.C.1
-
29
-
-
0018077590
-
Crystal structure of yeast phenylalanine transfer RNA. i. crystallographic refinement
-
Sussman, J.L. et al. (1978) Crystal structure of yeast phenylalanine transfer RNA. i. crystallographic refinement. J. Mol. Biol., 123, 607-630.
-
(1978)
J. Mol. Biol.
, vol.123
, pp. 607-630
-
-
Sussman, J.L.1
-
30
-
-
0031979738
-
Matching the crystallographic structure of ribosomal protein s7 to a three-dimensional model of the 16s ribosomal RNA
-
Tanaka, I. et al. (1998) Matching the crystallographic structure of ribosomal protein s7 to a three-dimensional model of the 16s ribosomal RNA. RNA, 4, 542-550.
-
(1998)
RNA
, vol.4
, pp. 542-550
-
-
Tanaka, I.1
-
31
-
-
33846103677
-
YUP: a molecular simulation program for coarse-grained and multiscaled models
-
Tan, R.K.Z. et al. (2006) YUP: a molecular simulation program for coarse-grained and multiscaled models. J. Chem. Theory Comput., 2, 529-540.
-
(2006)
J. Chem. Theory Comput.
, vol.2
, pp. 529-540
-
-
Tan, R.K.Z.1
-
32
-
-
47549110353
-
Structural basis of specific tRNA aminoacylation by a small in vitro selected ribozyme
-
Xiao, H. et al. (2008) Structural basis of specific tRNA aminoacylation by a small in vitro selected ribozyme. Nature, 454, 358-361.
-
(2008)
Nature
, vol.454
, pp. 358-361
-
-
Xiao, H.1
-
33
-
-
0035805213
-
Crystal structure of the ribosome at 5.5 are solution
-
Yusupov, M.M. et al. (2001) Crystal structure of the ribosome at 5.5 are solution. Science, 292, 883-896.
-
(2001)
Science
, vol.292
, pp. 883-896
-
-
Yusupov, M.M.1
-
34
-
-
0037086011
-
Structural insights into group II intron catalysis and branch-site selection
-
Zhang, L. and Doudna, J.A. (2002) Structural insights into group II intron catalysis and branch-site selection. Science, 295, 2084-2088.
-
(2002)
Science
, vol.295
, pp. 2084-2088
-
-
Zhang, L.1
Doudna, J.A.2
|