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Volumn 13, Issue 6, 2010, Pages

Development of trinucleotide (GGC)n SSR markers in peanut (Arachis hypogaea L.)

Author keywords

Cultivated peanut; Microsatellites; Polymorphism; Simple sequence repeat

Indexed keywords

ARACHIS HYPOGAEA; CULTIVATED PEANUT; ECONOMIC IMPORTANCE; FLANKING REGIONS; GC-RICH SEQUENCES; GENOMIC TOOLS; LATIN AMERICA; LOW LEVEL; MICROSATELLITES; OIL SEED CROPS; RESEARCH COMMUNITIES; SEMI ARID; SIMPLE SEQUENCE REPEATS; SIMPLE SEQUENCE-REPEAT MARKERS; SOUTH AMERICA; SSR MARKERS; SSR-ENRICHED LIBRARY; UNIQUE SEQUENCE; WILD SPECIES;

EID: 79960788857     PISSN: None     EISSN: 07173458     Source Type: Journal    
DOI: 10.2225/vol13-issue6-fulltext-6     Document Type: Article
Times cited : (19)

References (42)
  • 1
    • 34547673395 scopus 로고    scopus 로고
    • Genetic diversity of cultivated and wild-type peanuts evaluated with M13-tailed SSR markers and sequencing
    • [CrossRef]
    • BARKLEY, N.A.; DEAN, R.; PITTMAN, R.N.; WANG, M.; HOLBROOK, C.C. and PEDERSON, G.A. (2007). Genetic diversity of cultivated and wild-type peanuts evaluated with M13-tailed SSR markers and sequencing. Genetical Research, vol. 89, no. 2, p. 93-106. [CrossRef]
    • (2007) Genetical Research , vol.89 , Issue.2 , pp. 93-106
    • Barkley, N.A.1    Dean, R.2    Pittman, R.N.3    Wang, M.4    Holbrook, C.C.5    Pederson, G.A.6
  • 2
    • 61449123101 scopus 로고    scopus 로고
    • Discovery and characterization of a molecular marker for Sclerotinia minor (Jagger) resistance in peanut
    • [CrossRef]
    • CHENAULT, K.D.; MAAS, A.L.; DAMICONE, J.P.; PAYTON, M.E. and MELOUK, H.A. (2008). Discovery and characterization of a molecular marker for Sclerotinia minor (Jagger) resistance in peanut. Euphytica, vol. 166, no. 3, p. 357-365. [CrossRef]
    • (2008) Euphytica , vol.166 , Issue.3 , pp. 357-365
    • Chenault, K.D.1    Maas, A.L.2    Damicone, J.P.3    Payton, M.E.4    Melouk, H.A.5
  • 4
    • 0035026747 scopus 로고    scopus 로고
    • Microsatellite markers from sugarcane (Saccharum spp.) ESTs cross transferable to erianthus and sorghum
    • [CrossRef]
    • CORDEIRO, G.M.; CASU, R.; MCINTYRE, C.L.; MANNERS, J.M. and HENRY, R.J. (2001). Microsatellite markers from sugarcane (Saccharum spp.) ESTs cross transferable to erianthus and sorghum. Plant Science, vol. 160, no. 6, p. 1115-1123. [CrossRef]
    • (2001) Plant Science , vol.160 , Issue.6 , pp. 1115-1123
    • Cordeiro, G.M.1    Casu, R.2    McIntyre, C.L.3    Manners, J.M.4    Henry, R.J.5
  • 5
    • 44949187385 scopus 로고    scopus 로고
    • Isolation and characterization of novel microsatellite markers and their application for diversity assessment in cultivated groundnut (Arachis hypogaea)
    • [CrossRef]
    • CUC, L.M.; MACE, E.S.; CROUCH, J.H.; QUANG, V.D.; LONG, T.D. and VARSHNEY, R.K. (2008). Isolation and characterization of novel microsatellite markers and their application for diversity assessment in cultivated groundnut (Arachis hypogaea). BMC Plant Biology, vol. 8, no. 55. [CrossRef]
    • (2008) BMC Plant Biology , vol.8 , Issue.55
    • Cuc, L.M.1    Mace, E.S.2    Crouch, J.H.3    Quang, V.D.4    Long, T.D.5    Varshney, R.K.6
  • 9
    • 0344152917 scopus 로고    scopus 로고
    • Analysis of microsatellites in major crops assessed by computational and experimental approaches
    • [CrossRef]
    • GAO, L.; TANG, J.; LI, H. and JIA, J. (2003). Analysis of microsatellites in major crops assessed by computational and experimental approaches. Molecular Breeding, vol. 12, no. 3, p. 245-261. [CrossRef]
    • (2003) Molecular Breeding , vol.12 , Issue.3 , pp. 245-261
    • Gao, L.1    Tang, J.2    Li, H.3    Jia, J.4
  • 10
    • 68349089306 scopus 로고    scopus 로고
    • Analysis of gene expression profiles in leaf tissues of cultivated peanuts and development of EST-SSR markers and gene discovery
    • ID 715605. [CrossRef]
    • GUO, B.; CHEN, X.; HONG, Y.; LIANG, X.; DANG, P.; BRENNEMAN, T.; HOLBROOK, C.C. and CULBREATH, A. (2009). Analysis of gene expression profiles in leaf tissues of cultivated peanuts and development of EST-SSR markers and gene discovery. International Journal of Plant Genomics, vol. 2009, ID 715605. [CrossRef]
    • (2009) International Journal of Plant Genomics , vol.2009
    • Guo, B.1    Chen, X.2    Hong, Y.3    Liang, X.4    Dang, P.5    Brenneman, T.6    Holbrook, C.C.7    Culbreath, A.8
  • 11
    • 0034521503 scopus 로고    scopus 로고
    • Microsatellite isolation using amplified fragment length polymorphism markers: No cloning, no screening
    • [CrossRef]
    • HAKKI, E.E. and AKKAYA, M.S. (2000). Microsatellite isolation using amplified fragment length polymorphism markers: No cloning, no screening. Molecular Ecology, vol. 9, no. 12, p. 2152-2154. [CrossRef]
    • (2000) Molecular Ecology , vol.9 , Issue.12 , pp. 2152-2154
    • Hakki, E.E.1    Akkaya, M.S.2
  • 12
    • 2342420602 scopus 로고    scopus 로고
    • Microsatellites as DNA markers in cultivated peanut (Arachis hypogaea L.)
    • [CrossRef]
    • HE, G.; MENG, R.; NEWMAN, M.; GAO, G.; PITTMAN, R.N. and PRAKASH, C.S. (2003). Microsatellites as DNA markers in cultivated peanut (Arachis hypogaea L.). BMC Plant Biology, vol. 3, no. 3. [CrossRef]
    • (2003) BMC Plant Biology , vol.3 , Issue.3
    • He, G.1    Meng, R.2    Newman, M.3    Gao, G.4    Pittman, R.N.5    Prakash, C.S.6
  • 13
    • 0030883816 scopus 로고    scopus 로고
    • Betaine improves the PCR amplification of GC-Rich DNA sequences
    • [CrossRef]
    • HENKE, W.; HERDEL, K.; JUNG, K.; SCHNORR, D. and LOENING, S.A. (1997). Betaine improves the PCR amplification of GC-Rich DNA sequences. Nucleic Acids Research, vol. 25, no. 19, p. 3957-3958. [CrossRef]
    • (1997) Nucleic Acids Research , vol.25 , Issue.19 , pp. 3957-3958
    • Henke, W.1    Herdel, K.2    Jung, K.3    Schnorr, D.4    Loening, S.A.5
  • 14
    • 22844452481 scopus 로고    scopus 로고
    • Development and evaluation of a mini core collection for the U.S. peanut germplasm collection
    • [CrossRef]
    • HOLBROOK, C.C. and DONG, W. (2005). Development and evaluation of a mini core collection for the U.S. peanut germplasm collection. Crop Science, vol. 45, no. 4, p. 1540-1544. [CrossRef]
    • (2005) Crop Science , vol.45 , Issue.4 , pp. 1540-1544
    • Holbrook, C.C.1    Dong, W.2
  • 16
    • 77649281571 scopus 로고    scopus 로고
    • A SSR-based composite genetic linkage map for the cultivated peanut (Arachis hypogaea L.) genome
    • [CrossRef]
    • HONG, Y.; CHEN, X.; LIANG, X.; LIU, H.; ZHOU, G.; LI, S.; WEN, S.; HOLBROOK, C.C. and GUO, B. (2010). A SSR-based composite genetic linkage map for the cultivated peanut (Arachis hypogaea L.) genome. BMC Plant Biology, vol. 10, no. 17. [CrossRef]
    • (2010) BMC Plant Biology , vol.10 , Issue.17
    • Hong, Y.1    Chen, X.2    Liang, X.3    Liu, H.4    Zhou, G.5    Li, S.6    Wen, S.7    Holbrook, C.C.8    Guo, B.9
  • 17
    • 49849087025 scopus 로고    scopus 로고
    • Construction of genetic linkage map based on SSR markers in peanut (Arachis hypogaea L.)
    • [CrossRef]
    • HONG, Y.B.; LIANG, X.Q.; CHEN, X.P.; LIU, H.Y.; ZHOU, G.Y.; LI, S.X. and WEN, S.J. (2008). Construction of genetic linkage map based on SSR markers in peanut (Arachis hypogaea L.). Agricultural Sciences in China, vol. 7, no. 8, p. 915-921. [CrossRef]
    • (2008) Agricultural Sciences in China , vol.7 , Issue.8 , pp. 915-921
    • Hong, Y.B.1    Liang, X.Q.2    Chen, X.P.3    Liu, H.Y.4    Zhou, G.Y.5    Li, S.X.6    Wen, S.J.7
  • 18
    • 0032794864 scopus 로고    scopus 로고
    • Discovery and characterization of polymorphic simple sequence repeats (SSRs) in peanut
    • [CrossRef]
    • HOPKINS, M.S.; CASA, A.M.; WANG, T.; MITCHELL, S.E.; DEAN, R.E.; KOCHERT, G.D. and KRESOVICH, S. (1999). Discovery and characterization of polymorphic simple sequence repeats (SSRs) in peanut. Crop Science, vol. 39, no. 4, p. 1243-1247. [CrossRef]
    • (1999) Crop Science , vol.39 , Issue.4 , pp. 1243-1247
    • Hopkins, M.S.1    Casa, A.M.2    Wang, T.3    Mitchell, S.E.4    Dean, R.E.5    Kochert, G.D.6    Kresovich, S.7
  • 19
    • 34250743615 scopus 로고    scopus 로고
    • Comparative assessment of genetic diversity of peanut (Arachis hypogaea L.) genotypes with various levels of resistance to bacterial wilt through SSR and AFLP analyses
    • [CrossRef]
    • JIANG, H.; LIAO, B.; REN X.; LEI, Y.; MACE, E.; FU, T. and CROUCH, J.H. (2007). Comparative assessment of genetic diversity of peanut (Arachis hypogaea L.) genotypes with various levels of resistance to bacterial wilt through SSR and AFLP analyses. Journal of Genetics and Genomics, vol. 34, no. 6, p. 544-554. [CrossRef]
    • (2007) Journal of Genetics and Genomics , vol.34 , Issue.6 , pp. 544-554
    • Jiang, H.1    Liao, B.2    Ren, X.3    Lei, Y.4    Mace, E.5    Fu, T.6    Crouch, J.H.7
  • 20
    • 23844441591 scopus 로고    scopus 로고
    • The enhancement of PCR amplification of a random sequence DNA library by DMSO and betaine: Application to in vitro combinatorial selection of aptamers
    • [CrossRef]
    • KANG, J.; LEE, M.S. and GORENSTEIN, D.G. (2005). The enhancement of PCR amplification of a random sequence DNA library by DMSO and betaine: Application to in vitro combinatorial selection of aptamers. Journal of Biochemical and Biophysical Methods, vol. 64, no. 2, p. 147-151. [CrossRef]
    • (2005) Journal of Biochemical and Biophysical Methods , vol.64 , Issue.2 , pp. 147-151
    • Kang, J.1    Lee, M.S.2    Gorenstein, D.G.3
  • 21
    • 0028026319 scopus 로고
    • Enrichment of microsatellites from the citrus genome using biotinylated oligonucleotide sequences bound to streptavidin-coated magnetic particles
    • KIJAS, J.M.; FOWLER, J.C.; GARBETT, C.A. and THOMAS, M.R. (1994). Enrichment of microsatellites from the citrus genome using biotinylated oligonucleotide sequences bound to streptavidin-coated magnetic particles. BioTechniques, vol. 16, p. 657-662.
    • (1994) BioTechniques , vol.16 , pp. 657-662
    • Kijas, J.M.1    Fowler, J.C.2    Garbett, C.A.3    Thomas, M.R.4
  • 23
    • 33745033519 scopus 로고    scopus 로고
    • Distinct patterns of SSR distribution in the Arabidopsis thaliana and rice genomes
    • [CrossRef]
    • LAWSON, M.J. and ZHANG, L. (2006). Distinct patterns of SSR distribution in the Arabidopsis thaliana and rice genomes. Genome Biology, vol. 7, no. 2, R14. [CrossRef]
    • (2006) Genome Biology , vol.7 , Issue.2
    • Lawson, M.J.1    Zhang, L.2
  • 24
    • 0023256559 scopus 로고
    • Slipped-strand mispairing: A major mechanism for DNA sequence evolution
    • LEVINSON, G. and GUTMAN, G.A. (1987). Slipped-strand mispairing: a major mechanism for DNA sequence evolution. Molecular Biology and Evolution, vol. 4, no. 3, p. 203-221.
    • (1987) Molecular Biology and Evolution , vol.4 , Issue.3 , pp. 203-221
    • Levinson, G.1    Gutman, G.A.2
  • 25
    • 33845497928 scopus 로고    scopus 로고
    • SSR analysis of cultivated groundnut (Arachis hypogaea L.) germplasm resistant to rust and late leaf spot diseases
    • [CrossRef]
    • MACE, E.S.; PHONG, D.T.; UPADHYAYA, H.D.; CHANDRA, S. and CROUCH, J.H. (2006). SSR analysis of cultivated groundnut (Arachis hypogaea L.) germplasm resistant to rust and late leaf spot diseases. Euphytica, vol. 152, no. 3, p. 317-330. [CrossRef]
    • (2006) Euphytica , vol.152 , Issue.3 , pp. 317-330
    • Mace, E.S.1    Phong, D.T.2    Upadhyaya, H.D.3    Chandra, S.4    Crouch, J.H.5
  • 29
    • 0036478903 scopus 로고    scopus 로고
    • Microsatellites are preferentially associated with nonrepetitive DNA in plant genomes
    • [CrossRef]
    • MORGANTE, M.; HANAFEY, M. and POWELL, W. (2002). Microsatellites are preferentially associated with nonrepetitive DNA in plant genomes. Nature Genetics, vol. 30, no. 2, p. 194-200. [CrossRef]
    • (2002) Nature Genetics , vol.30 , Issue.2 , pp. 194-200
    • Morgante, M.1    Hanafey, M.2    Powell, W.3
  • 30
    • 33646200505 scopus 로고    scopus 로고
    • Distribution of microsatellites in the genome of Medicago truncatula: A resource of genetic markers that integrate genetic and physical maps
    • [CrossRef]
    • MUN, J.H.; KIM, D.J.; CHOI, H.K.; GISH, J.; DEBELLÉ, F.; MUDGE, J.; DENNY, R.; ENDRÉ, G.; SAURAT, O.; DUDEZ, A.M.; KISS, G.B.; ROE, B.; YOUNG, N.D. and COOK, D.R. (2006). Distribution of microsatellites in the genome of Medicago truncatula: A resource of genetic markers that integrate genetic and physical maps. Genetics, vol. 172, no. 4, p. 2541-2555. [CrossRef]
    • (2006) Genetics , vol.172 , Issue.4 , pp. 2541-2555
    • Mun, J.H.1    Kim, D.J.2    Choi, H.K.3    Gish, J.4    Debellé, F.5    Mudge, J.6    Denny, R.7    Endré, G.8    Saurat, O.9    Dudez, A.M.10    Kiss, G.B.11    Roe, B.12    Young, N.D.13    Cook, D.R.14
  • 31
    • 33751165548 scopus 로고    scopus 로고
    • Betaine, dimethyl sulfoxide, and 7-deaza-dGTP, a powerful mixture for amplification of GC-Rich DNA sequences
    • [CrossRef]
    • MUSSO, M.; BOCCIARDI, R.; PARODI, S.; RAVAZZOLO, R. and CECChERINI, I. (2006). Betaine, dimethyl sulfoxide, and 7-deaza-dGTP, a powerful mixture for amplification of GC-Rich DNA sequences. The Journal of Molecular Diagnostics, vol. 8, no. 5, p. 544-550. [CrossRef]
    • (2006) The Journal of Molecular Diagnostics , vol.8 , Issue.5 , pp. 544-550
    • Musso, M.1    Bocciardi, R.2    Parodi, S.3    Ravazzolo, R.4    Ceccherini, I.5
  • 32
    • 50849100163 scopus 로고    scopus 로고
    • Genetic diversity and relationship analysis of peanut germplasm using SSR markers
    • [CrossRef]
    • NAITO, Y.; SUZUKI, S.; IWATA, Y. and KUBOYAMA, T. (2008). Genetic diversity and relationship analysis of peanut germplasm using SSR markers. Breeding Science, vol. 58, no. 3, p. 293-300. [CrossRef]
    • (2008) Breeding Science , vol.58 , Issue.3 , pp. 293-300
    • Naito, Y.1    Suzuki, S.2    Iwata, Y.3    Kuboyama, T.4
  • 35
    • 0004045702 scopus 로고    scopus 로고
    • 2nd ed. Oxford, UK, BIOS Scientific Publisher. ISBN 1859962025
    • STRACHAN, T. and READ, A.P. (1999). Human Molecular Genetics II. 2nd ed. Oxford, UK, BIOS Scientific Publisher. 600 p. ISBN 1859962025.
    • (1999) Human Molecular Genetics II , pp. 600
    • Strachan, T.1    Read, A.P.2
  • 38
    • 0036428541 scopus 로고    scopus 로고
    • In silico analysis on frequency and distribution of microsatellites in ESTs of some cereal species
    • VARSHNEY, R.K.; THIEL, T.; STEIN, N.; LANGRIDGE, P. and GRANER, A. (2002). In silico analysis on frequency and distribution of microsatellites in ESTs of some cereal species. Cellular and Molecular Biology Letters, vol. 7, no. 2A, p. 537-546.
    • (2002) Cellular and Molecular Biology Letters , vol.7 , Issue.2 A , pp. 537-546
    • Varshney, R.K.1    Thiel, T.2    Stein, N.3    Langridge, P.4    Graner, A.5
  • 40
    • 0000075924 scopus 로고    scopus 로고
    • Genome mapping in legumes (Fam. Fabaceae)
    • In: PATERSON, A.H. ed, Austin, TX, RG Landes
    • YOUNG, N.D.; WEEDEN, N.F. and KOCHERT, G. Genome mapping in legumes (Fam. Fabaceae). (1996). In: PATERSON, A.H. ed. Genome Mapping in Plants. Austin, TX, RG Landes, p. 211-227.
    • (1996) Genome Mapping in Plants , pp. 211-227
    • Young, N.D.1    Weeden, N.F.2    Kochert, G.3
  • 41
    • 0027549717 scopus 로고
    • Phylogenetic distribution and genetic mapping of a (GGC)n microsatellite from rice (Oryza sativa L.)
    • [CrossRef]
    • ZHAO, X. and KOCHERT, G. (1993). Phylogenetic distribution and genetic mapping of a (GGC)n microsatellite from rice (Oryza sativa L.). Plant Molecular Biology, vol. 21, no. 4, p. 607-614. [CrossRef]
    • (1993) Plant Molecular Biology , vol.21 , Issue.4 , pp. 607-614
    • Zhao, X.1    Kochert, G.2
  • 42
    • 79960788857 scopus 로고    scopus 로고
    • Development of trinucleotide (GGC)n SSR markers in peanut (Arachis hypogaea L.)
    • YUAN, M.; GONG, L.; MENG, R.; LI, S.; DANG, P.; GUO, B. and HE, G. (2010). Development of trinucleotide (GGC)n SSR markers in peanut (Arachis hypogaea L.). Electronic Journal of Biotechnology, vol. 13, no. 6. http://dx.doi.org/10.2225/vol13-issue6-fulltext-6
    • (2010) Electronic Journal of Biotechnology , vol.13 , Issue.6
    • Yuan, M.1    Gong, L.2    Meng, R.3    Li, S.4    Dang, P.5    Guo, B.6    He, G.7


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