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Volumn 108, Issue 26, 2011, Pages 10574-10578

Four amino acids guide the assembly or disassembly of Arabidopsis histone H3.3-containing nucleosomes

Author keywords

Chromatin remodeling; H3 dynamics; Histone code; Nucleolar dominance

Indexed keywords

AMINO ACID; HISTONE H3; RIBOSOME DNA; RNA POLYMERASE;

EID: 79960590442     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1017882108     Document Type: Article
Times cited : (53)

References (39)
  • 1
    • 1842411320 scopus 로고    scopus 로고
    • Crystal structure of the nucleosome core particle at 2.8 A resolution
    • DOI 10.1038/38444
    • Luger K, Mäder AW, Richmond RK, Sargent DF, Richmond TJ (1997) Crystal structure of the nucleosome core particle at 2.8 A resolution. Nature 389:251-260. (Pubitemid 27406632)
    • (1997) Nature , vol.389 , Issue.6648 , pp. 251-260
    • Luger, K.1    Mader, A.W.2    Richmond, R.K.3    Sargent, D.F.4    Richmond, T.J.5
  • 2
    • 0035839136 scopus 로고    scopus 로고
    • Translating the histone code
    • DOI 10.1126/science.1063127
    • Jenuwein T, Allis CD (2001) Translating the histone code. Science 293:1074-1080. (Pubitemid 32758077)
    • (2001) Science , vol.293 , Issue.5532 , pp. 1074-1080
    • Jenuwein, T.1    Allis, C.D.2
  • 3
    • 75749101495 scopus 로고    scopus 로고
    • Chromatin remodelling during development
    • Ho L, Crabtree GR (2010) Chromatin remodelling during development. Nature 463:474-484.
    • (2010) Nature , vol.463 , pp. 474-484
    • Ho, L.1    Crabtree, G.R.2
  • 4
    • 77949874234 scopus 로고    scopus 로고
    • Histone variants - Ancient wrap artists of the epigenome
    • Talbert PB, Henikoff S (2010) Histone variants - ancient wrap artists of the epigenome. Nat Rev Mol Cell Biol 11:264-275.
    • (2010) Nat Rev Mol Cell Biol , vol.11 , pp. 264-275
    • Talbert, P.B.1    Henikoff, S.2
  • 5
    • 34548267126 scopus 로고    scopus 로고
    • Tetrameric structure of centromeric nucleosomes in interphase Drosophila cells
    • Dalal Y, Wang H, Lindsay S, Henikoff S (2007) Tetrameric structure of centromeric nucleosomes in interphase Drosophila cells. PLoS Biol 5:e218.
    • (2007) PLoS Biol , vol.5
    • Dalal, Y.1    Wang, H.2    Lindsay, S.3    Henikoff, S.4
  • 7
    • 34250173486 scopus 로고    scopus 로고
    • Nonhistone Scm3 and Histones CenH3-H4 Assemble the Core of Centromere-Specific Nucleosomes
    • DOI 10.1016/j.cell.2007.04.026, PII S0092867407005338
    • Mizuguchi G, Xiao H, Wisniewski J, Smith MM, Wu C (2007) Nonhistone Scm3 and histones CenH3-H4 assemble the core of centromere-specific nucleosomes. Cell 129:1153-1164. (Pubitemid 46900852)
    • (2007) Cell , vol.129 , Issue.6 , pp. 1153-1164
    • Mizuguchi, G.1    Xiao, H.2    Wisniewski, J.3    Smith, M.M.4    Wu, C.5
  • 8
    • 0000324985 scopus 로고
    • Multiplicity of histone h3 variants in wheat, barley, rice, and maize
    • Waterborg JH (1991) Multiplicity of histone h3 variants in wheat, barley, rice, and maize. Plant Physiol 96:453-458.
    • (1991) Plant Physiol , vol.96 , pp. 453-458
    • Waterborg, J.H.1
  • 9
    • 0036299092 scopus 로고    scopus 로고
    • The histone variant H3.3 marks active chromatin by replication- independent nucleosome assembly
    • DOI 10.1016/S1097-2765(02)00542-7
    • Ahmad K, Henikoff S (2002) The histone variant H3.3 marks active chromatin by replication-independent nucleosome assembly. Mol Cell 9:1191-1200. (Pubitemid 34722299)
    • (2002) Molecular Cell , vol.9 , Issue.6 , pp. 1191-1200
    • Ahmad, K.1    Henikoff, S.2
  • 10
    • 0742304304 scopus 로고    scopus 로고
    • Histone H3.1 and H3.3 Complexes Mediate Nucleosome Assembly Pathways Dependent or Independent of DNA Synthesis
    • DOI 10.1016/S0092-8674(03)01064-X
    • Tagami H, Ray-Gallet D, Almouzni G, Nakatani Y (2004) Histone H3.1 and H3.3 complexes mediate nucleosome assembly pathways dependent or independent of DNA synthesis. Cell 116:51-61. (Pubitemid 38156183)
    • (2004) Cell , vol.116 , Issue.1 , pp. 51-61
    • Tagami, H.1    Ray-Gallet, D.2    Almouzni, G.3    Nakatani, Y.4
  • 12
    • 77649099092 scopus 로고    scopus 로고
    • Distinct factors control histone variant H3.3 localization at specific genomic regions
    • Goldberg AD, et al. (2010) Distinct factors control histone variant H3.3 localization at specific genomic regions. Cell 140:678-691.
    • (2010) Cell , vol.140 , pp. 678-691
    • Goldberg, A.D.1
  • 13
    • 77956282773 scopus 로고    scopus 로고
    • Daxx is an H3.3-specific histone chaperone and cooperates with ATRX in replication-independent chromatin assembly at telomeres
    • Lewis PW, Elsaesser SJ, Noh KM, Stadler SC, Allis CD (2010) Daxx is an H3.3-specific histone chaperone and cooperates with ATRX in replication- independent chromatin assembly at telomeres. Proc Natl Acad Sci USA 107:14075-14080.
    • (2010) Proc Natl Acad Sci USA , vol.107 , pp. 14075-14080
    • Lewis, P.W.1    Elsaesser, S.J.2    Noh, K.M.3    Stadler, S.C.4    Allis, C.D.5
  • 14
    • 77649262618 scopus 로고    scopus 로고
    • ATRX interacts with H3.3 in maintaining telomere structural integrity in pluripotent embryonic stem cells
    • Wong LH, et al. (2010) ATRX interacts with H3.3 in maintaining telomere structural integrity in pluripotent embryonic stem cells. Genome Res 20:351-360.
    • (2010) Genome Res , vol.20 , pp. 351-360
    • Wong, L.H.1
  • 15
    • 77953955724 scopus 로고    scopus 로고
    • The death-associated protein DAXX is a novel histone chaperone involved in the replication-independent deposition of H3.3
    • Drané P, Ouararhni K, Depaux A, Shuaib M, Hamiche A (2010) The death-associated protein DAXX is a novel histone chaperone involved in the replication-independent deposition of H3.3. Genes Dev 24:1253-1265.
    • (2010) Genes Dev , vol.24 , pp. 1253-1265
    • Drané, P.1    Ouararhni, K.2    Depaux, A.3    Shuaib, M.4    Hamiche, A.5
  • 16
    • 75149157164 scopus 로고    scopus 로고
    • A histone chaperone, DEK, transcriptionally coactivates a nuclear receptor
    • Sawatsubashi S, et al. (2010) A histone chaperone, DEK, transcriptionally coactivates a nuclear receptor. Genes Dev 24:159-170.
    • (2010) Genes Dev , vol.24 , pp. 159-170
    • Sawatsubashi, S.1
  • 17
    • 33646016572 scopus 로고    scopus 로고
    • Maize rough sheath2 and its Arabidopsis orthologue ASYMMETRIC LEAVES1 interact with HIRA, a predicted histone chaperone, to maintain knox gene silencing and determinacy during organogenesis
    • Phelps-Durr TL, Thomas J, Vahab P, Timmermans MC (2005) Maize rough sheath2 and its Arabidopsis orthologue ASYMMETRIC LEAVES1 interact with HIRA, a predicted histone chaperone, to maintain knox gene silencing and determinacy during organogenesis. Plant Cell 17:2886-2898.
    • (2005) Plant Cell , vol.17 , pp. 2886-2898
    • Phelps-Durr, T.L.1    Thomas, J.2    Vahab, P.3    Timmermans, M.C.4
  • 18
    • 37249012276 scopus 로고    scopus 로고
    • Nucleosome destabilization in the epigenetic regulation of gene expression
    • Henikoff S (2008) Nucleosome destabilization in the epigenetic regulation of gene expression. Nat Rev Genet 9:15-26.
    • (2008) Nat Rev Genet , vol.9 , pp. 15-26
    • Henikoff, S.1
  • 19
    • 78650170188 scopus 로고    scopus 로고
    • Zygotic resetting of the HISTONE 3 variant repertoire participates in epigenetic reprogramming in Arabidopsis
    • Ingouff M, et al. (2010) Zygotic resetting of the HISTONE 3 variant repertoire participates in epigenetic reprogramming in Arabidopsis. Curr Biol 20:2137-2143.
    • (2010) Curr Biol , vol.20 , pp. 2137-2143
    • Ingouff, M.1
  • 20
    • 37749051130 scopus 로고    scopus 로고
    • Epigenetic memory of an active gene state depends on histone H3.3 incorporation into chromatin in the absence of transcription
    • Ng RK, Gurdon JB (2008) Epigenetic memory of an active gene state depends on histone H3.3 incorporation into chromatin in the absence of transcription. Nat Cell Biol 10:102-109.
    • (2008) Nat Cell Biol , vol.10 , pp. 102-109
    • Ng, R.K.1    Gurdon, J.B.2
  • 21
    • 67650960676 scopus 로고    scopus 로고
    • Transcription in the absence of histone H3.3
    • Hödl M, Basler K (2009) Transcription in the absence of histone H3.3. Curr Biol 19:1221-1226.
    • (2009) Curr Biol , vol.19 , pp. 1221-1226
    • Hödl, M.1    Basler, K.2
  • 22
    • 71849103121 scopus 로고    scopus 로고
    • Transcriptional and developmental functions of the H3.3 histone variant in Drosophila
    • Sakai A, Schwartz BE, Goldstein S, Ahmad K (2009) Transcriptional and developmental functions of the H3.3 histone variant in Drosophila. Curr Biol 19:1816-1820.
    • (2009) Curr Biol , vol.19 , pp. 1816-1820
    • Sakai, A.1    Schwartz, B.E.2    Goldstein, S.3    Ahmad, K.4
  • 23
    • 17044394787 scopus 로고    scopus 로고
    • Transcriptional activation triggers deposition and removal of the histone variant H3.3
    • Schwartz BE, Ahmad K (2005) Transcriptional activation triggers deposition and removal of the histone variant H3.3. Genes Dev 19:804-814.
    • (2005) Genes Dev , vol.19 , pp. 804-814
    • Schwartz, B.E.1    Ahmad, K.2
  • 24
    • 77952996319 scopus 로고    scopus 로고
    • Genome-wide kinetics of nucleosome turnover determined by metabolic labeling of histones
    • Deal RB, Henikoff JG, Henikoff S (2010) Genome-wide kinetics of nucleosome turnover determined by metabolic labeling of histones. Science 328:1161-1164.
    • (2010) Science , vol.328 , pp. 1161-1164
    • Deal, R.B.1    Henikoff, J.G.2    Henikoff, S.3
  • 25
    • 33644682796 scopus 로고    scopus 로고
    • Analysis of the histone H3 gene family in Arabidopsis and identification of the male-gamete-specific variant AtMGH3
    • Okada T, Endo M, Singh MB, Bhalla PL (2005) Analysis of the histone H3 gene family in Arabidopsis and identification of the male-gamete-specific variant AtMGH3. Plant J 44:557-568.
    • (2005) Plant J , vol.44 , pp. 557-568
    • Okada, T.1    Endo, M.2    Singh, M.B.3    Bhalla, P.L.4
  • 28
    • 77952241644 scopus 로고    scopus 로고
    • New functions for an old variant: No substitute for histone H3.3
    • Elsaesser SJ, Goldberg AD, Allis CD (2010) New functions for an old variant: No substitute for histone H3.3. Curr Opin Genet Dev 20:110-117.
    • (2010) Curr Opin Genet Dev , vol.20 , pp. 110-117
    • Elsaesser, S.J.1    Goldberg, A.D.2    Allis, C.D.3
  • 30
    • 0027145426 scopus 로고
    • Relationship between endopolyploidy and cell size in epidermal tissue of Arabidopsis
    • DOI 10.1105/tpc.5.11.1661
    • Melaragno JE, Mehrotra B, Coleman AW (1993) Relationship between Endopolyploidy and Cell Size in Epidermal Tissue of Arabidopsis. Plant Cell 5:1661-1668. (Pubitemid 2021821)
    • (1993) Plant Cell , vol.5 , Issue.11 , pp. 1661-1668
    • Melaragno, J.E.1    Mehrotra, B.2    Coleman, A.W.3
  • 31
    • 2542449966 scopus 로고    scopus 로고
    • Tissue-specific expression and dynamic organization of SR splicing factors in Arabidopsis
    • DOI 10.1091/mbc.E04-02-0100
    • Fang Y, Hearn S, Spector DL (2004) Tissue-specific expression and dynamic organization of SR splicing factors in Arabidopsis. Mol Biol Cell 15:2664-2673. (Pubitemid 38691856)
    • (2004) Molecular Biology of the Cell , vol.15 , Issue.6 , pp. 2664-2673
    • Fang, Y.1    Hearn, S.2    Spector, D.L.3
  • 32
    • 23744460663 scopus 로고    scopus 로고
    • Variant histone H3.3 is deposited at sites of nucleosomal displacement throughout transcribed genes while active histone modifications show a promoter-proximal bias
    • DOI 10.1101/gad.347705
    • Wirbelauer C, Bell O, Schübeler D (2005) Variant histone H3.3 is deposited at sites of nucleosomal displacement throughout transcribed genes while active histone modifications show a promoter-proximal bias. Genes Dev 19:1761-1766. (Pubitemid 41126914)
    • (2005) Genes and Development , vol.19 , Issue.15 , pp. 1761-1766
    • Wirbelauer, C.1    Bell, O.2    Schubeler, D.3
  • 33
    • 33745726548 scopus 로고    scopus 로고
    • Histone H3.3 variant dynamics in the germline of Caenorhabditis elegans
    • Ooi SL, Priess JR, Henikoff S (2006) Histone H3.3 variant dynamics in the germline of Caenorhabditis elegans. PLoS Genet 2:e97.
    • (2006) PLoS Genet , vol.2
    • Ooi, S.L.1    Priess, J.R.2    Henikoff, S.3
  • 34
    • 0027537710 scopus 로고
    • Dynamic methylation of alfalfa histone H3
    • Waterborg JH (1993) Dynamic methylation of alfalfa histone H3. J Biol Chem 268:4918-4921.
    • (1993) J Biol Chem , vol.268 , pp. 4918-4921
    • Waterborg, J.H.1
  • 35
    • 0000057078 scopus 로고
    • Selective effects of actinomycin D on the intracellular distribution of RNA synthesis in tissue culture cells
    • Perry RP (1963) Selective effects of actinomycin D on the intracellular distribution of RNA synthesis in tissue culture cells. Exp Cell Res 29:400-406.
    • (1963) Exp Cell Res , vol.29 , pp. 400-406
    • Perry, R.P.1
  • 37
    • 4444221565 scopus 로고    scopus 로고
    • UCSF Chimera - A visualization system for exploratory research and analysis
    • Pettersen EF, et al. (2004) UCSF Chimera - a visualization system for exploratory research and analysis. J Comput Chem 25:1605-1612.
    • (2004) J Comput Chem , vol.25 , pp. 1605-1612
    • Pettersen, E.F.1
  • 39
    • 0032447801 scopus 로고    scopus 로고
    • Floral dip: A simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana
    • Clough SJ, Bent AF (1998) Floral dip: A simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. Plant J 16:735-743.
    • (1998) Plant J , vol.16 , pp. 735-743
    • Clough, S.J.1    Bent, A.F.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.