Old and new challenges in using species diversity for assessing biodiversity

Philosophical Transactions of the Royal Society B: Biological Sciences

Volumn 366, Issue 1576, 2011, Pages 2426-2437

  Chiarucci, Alessandro ^a   Bacaro, Giovanni ^a   Scheiner, Samuel M ^b  

^a UNIVERSITY OF SIENA   (Italy)

^b NATIONAL SCIENCE FOUNDATION   (United States)

Author keywords

Biodiversity assessment; Biogeography; Diversity measurement; Ecology; Spatial scale

Indexed keywords

ABUNDANCE; BIODIVERSITY; BIOGEOGRAPHY; CONCEPTUAL FRAMEWORK; ECOSYSTEM FUNCTION; ENVIRONMENTAL ASSESSMENT; ENVIRONMENTAL MONITORING; GLOBAL CHANGE; PHYLOGENETICS; SPECIES CONSERVATION; SPECIES DIVERSITY; SPECIES INVENTORY;

ANIMAL; BIODIVERSITY; ECOSYSTEM; ENVIRONMENTAL PROTECTION; METHODOLOGY; REVIEW;

ANIMALS; BIODIVERSITY; CONSERVATION OF NATURAL RESOURCES; ECOSYSTEM;

EID: 79960553964     PISSN: 09628436     EISSN: 14712970     Source Type: Journal    
DOI: 10.1098/rstb.2011.0065     Document Type: Review

References (137)

1. Wilson, E. O. & Peter, F. M. 1981 Biodiversity. Washington, DC: National Academy Press.
2. Scheiner, S. M. & Willig, M. R. 2011 The theory of ecology. Chicago, IL: University of Chicago Press.
3. Butchart, S. H. M. et al. 2010 Global biodiversity: indicators of recent declines. Science 328, 1164-1168. (doi:10.1126/science.1187512)
4. Hector, A. & Bagchi, R. 2007 Biodiversity and ecosystem multifunctionality. Nature 448, 188-190. (doi:715010.1038/nature05947)
5. Hector, A. 1998 The effect of diversity on productivity: detecting the role of complementarity. Oikos 82, 597-599. (doi:10.2307/3546380)
6. Loreau, M., Naeem, S. & Inchausti, P. (eds) 2002 Biodiversity and ecosystem functioning: synthesis and perspectives. Oxford, UK: Oxford University Press.
7. Naeem, S., Bunker, D. E. & Hector, A. 2009 Biodiversity, ecosystem functioning, and human wellbeing: an ecological and economic perspective. Oxford, UK: Oxford University Press.
8. Baillie, J. E. M. et al. 2008 Toward monitoring global biodiversity. Conserv. Lett. 1, 18-26. (doi:10.1111/j. 1755-263X.2008.00009.x)
9. Green, R., Balmford, A., Crane, P., Mace, G., Reynolds, J. & Turner, R. 2005 A framework for improved monitoring of biodiversity: responses to the world summit on sustainable development. Conserv. Biol. 19, 56-65. (doi:10.1111/j.1523-1739.2005.00289.x)
10. Duro, D., Coops, N., Wulder, M. & Han, T. 2007 Development of a large area biodiversity monitoring system driven by remote sensing. Prog. Phys. Geogr. 31, 235-260. (doi:10.1177/0309133307079054)
11. Henry, P. et al. 2008 Integrating ongoing biodiversity monitoring: potential benefits and methods. Bio-divers. Conserv. 17, 3357-3382. (doi:10.1007/s10531-008-9417-1)
12. Pereira, H. & Cooper, H. 2006 Towards the global monitoring of biodiversity change. Trends Ecol. Evol. 21, 123-129. (doi:10.1016/j.tree.2005.10.015)
13. Noss, R. 1999 Assessing and monitoring forest biodiversity: a suggested framework and indicators. For. Ecol. Manage. 115, 135-146. (doi:10.1016/S0378-1127 (98)00394-6)
14. Feld, C. et al. 2009 Indicators of biodiversity and ecosystem services: a synthesis across ecosystems and spatial scales. Oikos 118, 1862-1871. (doi:10.1111/j. 1600-0706.2009.17860.x)
15. Chiarucci, A., Bacaro, G. & Rocchini, D. 2008 Quantifying plant species diversity in a Natura 2000 network: old ideas and new proposals. Biol. Conserv. 141, 2608-2618. (doi:10.1016/j.biocon.2008.07.024)
16. Feld, C. K., Sousa, J. P., Silva, P. M. & Dawson, T. P. 2010 Indicators for biodiversity and ecosystem services: towards an improved framework for ecosystems assessment. Biodivers. Conserv. 19, 2895-2919. (doi:10. 1007/s10531-010-9875-0)
17. Colwell, R. & Coddington, J. 1994 Estimating terrestrial biodiversity through extrapolation. Phil. Trans. R. Soc. Lond. B 345, 101-118. (doi:10.1098/rstb.1994.0091)
18. Whittaker, R. H. 1972 Evolution and measurement of species diversity. Taxon 21, 213-251. (doi:10.2307/ 1218190)
19. Hurlbert, S. H. 1971 The nonconcept of species diversity: a critique and alternative parameters. Ecology 52, 577-586. (doi:10.2307/1934145)
20. Peet, R. 1974 The measurement of species diversity. Ann. Rev. Ecol. Syst. 5, 285-307. (doi:10.1146/ annurev.es.05.110174.001441)
21. Ellison, A. 2010 Partitioning diversity. Ecology 91, 1962-1963. (doi:10.1890/09-1692.1)
22. Brown, J. H. & Maurer, B. A. 1989 Macroecology: the division of food and space among species on continents. Science 243, 1145-1150. (doi:10.1126/science.243. 4895.1145)
23. Davies, J. & Buckley, L. B. 2011 Phylogenetic diversity as a window into the evolutionary and biogeographic histories of present-day richness gradients for mammals. Phil. Trans. R. Soc. B 366, 2414-2425. (doi:10. 198/rstb.2011.0058)
24. MacArthur, R. H. & Wilson, E. O. 1967 The theory of island biogeography. Princeton, NJ: Princeton University Press.
25. Sax, D. & Gaines, S. 2011 The equilibrium theory of island biogeography. In The theory of ecology, pp. 219-240. Chicago, IL: Chicago University Press.
26. Scheiner, S. & Willig, M. 2011 A general theory of ecology. In The theory of ecology, pp. 3-18. Chicago, IL: University of Chicago Press.
27. Wiens, J. & Donoghue, M. 2004 Historical biogeogra-phy, ecology and species richness. Trends Ecol. Evol. 19, 639-644. (doi:10.1016/j.tree.2004.09.011)
28. Kreft, H., Jetz, W., Mutke, J., Kier, G. & Barthlott, W. 2008 Global diversity of island floras from a macroeco-logical perspective. Ecol. Lett. 11, 116-127.
29. Willig, M. & Bloch, C. 2006 Latitudinal gradients of species richness: a test of the geographic area hypothesis at two ecological scales. Oikos 112, 163-173. (doi:10. 1111/j.0030-1299.2006.14009.x)
30. Wilson, J., Wells, T., Trueman, I., Jones, G., Atkinson, M., Crawley, M., Dodd, M.E. & Silvertown, J. 1996 Are there assembly rules for plant species abundance? An investigation in relation to soil resources and successional trends. J. Ecol. 84, 527-538. (doi:10.2307/2261475)
31. Tilman, D., Reich, P. & Knops, J. 2006 Biodiversity and ecosystem stability in a decade-long grassland experiment. Nature 441, 629-632. (doi:10.1038/nature04742)
32. Polley, H., Wilsey, B. & Derner, J. 2003 Do species evenness and plant density influence the magnitude of selection and complementarity effects in annual plant species mixtures? Ecol. Lett. 6, 248-256. (doi:10. 1046/j.1461-0248.2003.00422.x)
33. Robinson, G., Yurlina, M. & Handel, S. 1994 A century of change in the Staten Island flora: ecological correlates of species losses and invasions. Bull. Torrey Botanical Club 121, 119-129. (doi:10.2307/2997163)
34. McCollin, D., Moore, L. & Sparks, T. 2000 The flora of a cultural landscape: environmental determinants of change using archival sources. Biol. Conserv. 92, 249-263. (doi:10.1016/S0006-3207(99)00070-1)
35. Mouillot, D. & Wilson, J. 2002 Can we tell how a community was constructed? A comparison of five evenness indices for their ability to identify theoretical models of community construction. Theoret. Popul. Biol. 61, 141-151. (doi:10.1006/tpbi.2001.1565)
36. Chiarucci, A., Alongi, C. & Wilson, J. B. 2004 Competitive exclusion and the no-interaction model operate simultaneously in microcosm plant communities. J. Veget. Sci. 15, 789-796.
37. Mulder, C., Bazeley-White, E., Dimitrakopoulos, P., Hector, A., Scherer-Lorenzen, M. & Schmid, B. 2004 Species evenness and productivity in experimental plant communities. Oikos 107, 50-63. (doi:10.1111/j. 0030-1299.2004.13110.x)
38. Tuomisto, H. 2010 A consistent terminology for quantifying species diversity? Yes, it does exist. Oecologia 164, 853-860. (doi:10.1007/s00442-010-1812-0)
39. Palmer, M. W. & White, P. S. 1994 On the existence of ecological communities. J. Veget. Sci. 5, 279-282. (doi:10.2307/3236162)
40. Chiarucci, A. 2007 To sample or not to sample? That is the question. for the vegetation scientist. Folia Geobot. 42, 209-216. (doi:10.1007/BF02893887)
41. Magurran, A. E. 2004 Measuring biological diversity. Malden, MA: Blackwell Science.
42. Gurevitch, J., Scheiner, S. M. & Fox, G. A. 2006 The ecology of plants, 2nd edn. Sunderland, MA: Sinauer Associates.
43. Laffan, S. W., Lubarsky, E. & Rosauer, D. F. 2010 Bio-diverse, a tool for the spatial analysis of biological and related diversity. Ecography 33, 643-647. (doi:10.1111/j.1600-0587.2010.06237.x)
44. Shannon, C. E. 1948 A mathematical theory of communication. Bell Syst. Tech. J. 27, 379-423. 623- 656.
45. Simpson, E. H. 1949 Measurement of diversity. Nature 163, 688-688. (doi:10.1038/163688a0)
46. Ricotta, C. 2005 Through the jungle of biological diversity. Acta Biotheoret. 53, 29-38. (doi:10.1007/s10441-005-7001-6)
47. Solow, A. R. & Polasky, S. 1994 Measuring biological diversity. Environ. Ecol. Stat. 1, 95-103. (doi:10.1007/ BF02426650)
48. Sarkar, S. & Margules, C. 2002 Operationalizing biodiversity for conservation planning. J. Biosci. 27, 299-308. (doi:10.1007/BF02704961)
49. Ricotta, C. 2007 A semantic taxonomy for diversity measures. Acta Biotheoret. 55, 23-33. (doi:10.1007/ s10441-007-9008-7)
50. Poole, R. W. 1974 An introduction to quantitative ecology. New York, NY: McGraw-Hill.
51. Smith, B. & Wilson, J. 1996 A consumer's guide to evenness indices. Oikos 76, 70-82. (doi:10.2307/ 3545749)
52. Jost, L. 2010 The relation between evenness and diversity. Diversity 2, 207-232. (doi:10.3390/d2020207)
53. Wittebolle, L., Marzorati, M., Clement, L., Balloi, A., Daffonchio, D., Heylen, K., De Vos, P., Verstraete, W. & Boon, N. 2009 Initial community evenness favours functionality under selective stress. Nature 458, 623-626. (doi:10.1038/nature07840)
54. Juhasz-Nagy, P. 1993 Notes on compositional diversity. Hydrobiologia 249, 173-182. (doi:10.1007/BF00008852)
55. Jost, L. 2006 Entropy and diversity. Oikos 113, 363-375. (doi:10.1111/j.2006.0030-1299.14714.x)
56. Hill, M. O. 1973 Diversity and evenness: a unifying notation and its consequences. Ecology 54, 427-432. (doi:10.2307/1934352)
57. Arrhenius, O. 1921 Species and area. J. Ecol. 9, 95-99. (doi:10.2307/2255763)
58. Gleason, H. A. 1922 On the relation between species and area. Ecology 3, 158-162. (doi:10.2307/1929150)
59. Dungan, J. L., Perry, J. N., Dale, M. R. T., Legendre, P., Citron-Pousty, S., Fortin, M. J., Jakomulska, A., Miriti, M. & Rosemberg, M. S. 2002 A balanced view of scale in spatial statistical analysis. Ecography 25, 626-640. (doi:10.1034/j.1600-0587.2002.250510.x)
60. Scheiner, S. M. 2003 Six types of species-area curves. Glob. Ecol. Biogeogr. 12, 441-447. (doi:10.1046/j.1466-822X.2003.00061.x)
61. Whittaker, R. H. Vegetation of the Siskiyou Mountains, Oregon and California. Ecol. Monogr. 30, 279-338. (doi:10.2307/1943563)
62. Jost, L. 2007 Partitioning diversity into independent alpha and beta components. Ecology 88, 2427-2439. (doi:10.1890/06-1736.1)
63. Tuomisto, H. 2010 A diversity of beta diversities: straightening up a concept gone awry. I. Defining beta diversity as a function of alpha and gamma diversity. Ecography 33, 2-22. (doi:10.1111/j.1600-0587.2009. 05880.x)
64. Scheiner, S. M. 1992 Measuring pattern diversity. Ecology 73, 1860-1867. (doi:10.2307/1940037)
65. Vellend, M. 2001 Do commonly used indices of b-diversity measure species turnover? J. Veget. Sci. 12, 545-552. (doi:10.2307/3237006)
66. Jurasinski, G., Retzer, V. & Beierkuhnlein, C. 2009 Inventory, differentiation, and proportional diversity: a consistent terminology for quantifying species diversity. Oecologia 159, 15-26. (doi:10.1007/s00442-008-1190-z)
67. Koleff, P., Gaston, K. J. & Lennon, J. J. 2003 Measuring beta diversity for presence-absence data. J. Anim. Ecol. 72, 367-382. (doi:10.1046/j.1365-2656.2003. 00710.x)
68. Tuomisto, H. 2010 A diversity of beta diversities: straightening up a concept gone awry. II. Quantifying beta diversity and related phenomena. Ecography 33, 23-45. (doi:10.1111/j.1600-0587.2009.06148.x)
69. Baselga, A. 2010 Multiplicative partition of true diversity yields independent alpha and beta components; additive partition does not. Ecology 91, 1974-1981. (doi:10.1890/09-0320.1)
70. Jost, L. 2010 Independence of alpha and beta diversities. Ecology 91, 1969-1974. (doi:10.1890/09-0368.1)
71. Loreau, M. 2000 Are communities saturated? On the relationship between alfa, beta and gamma diversity. Ecol. Lett. 3, 73-76. (doi:10.1046/j.1461-0248.2000. 00127.x)
72. Scheiner, S. M., Cox, S. B., Willig, M., Mittelbach, G. G., Osemberg, C. & Kaspari, M. 2000 Species richness, species-area curves and Simpson's paradox. Evol. Ecol. Res. 2, 791-802.
73. Scheiner, S. M., Chiarucci, A., Fox, G. A., Helmus, M. R., McGlinn, D. J. & Willig, M. R. 2011 The underpinnings of the relationship of species richness with space and time. Ecol. Monogr. 81, 195-213.
74. Wilson, J. B., Steel, J. B., King, W. M. & Gitay, H. 1999 The effects of spatial scale on evenness. J. Veget. Sci. 10, 463-468. (doi:10.2307/3237181)
75. Vane-Wright, R. I., Humphries, C. J. & Williams, P. H. 1991 What to protect? Systematics and the agony of choice. Biol. Conserv. 55, 235-254. (doi:10.1016/ 0006-3207(91)90030-D)
76. Prinzing, A. 2001 The niche of higher plants: evidence for phylogenetic conservatism. Proc. R. Soc. Lond. B 268, 2383-2389. (doi:10.1098/rspb.2001.1801)
77. Gerhold, P., Partel, M., Liira, J., Zobel, K. & Prinzing, A. 2008 Phylogenetic structure of local communities predicts the size of the regional species pool. J. Ecol. 96, 709-712. (doi:10.1111/j.1365-2745.2008.01386.x)
78. Faith, D. P. 1996 Phylogenetic pattern and the quantification of organismal biodiversity. In Biodiversity. Measurement and estimation (ed. D. L. Hawksworth), pp. 45-57. London, UK: Chapman and Hall.
79. Keith, S. A., Newton, A. C., Morecroft, M. D., Bealey, C. E. & Bullock, J. M. 2009 Taxonomic homogenization of woodland plant communities over 70 years. Proc. R. Soc. B 276, 3539-3544. (doi:10.1098/rspb.2009.0938)
80. Faith, D. P. 1992 Conservation evaluation and phylogen-etic diversity. Biol. Conserv. 61, 1-10. (doi:10.1016/ 0006-3207(92)91201-3)
81. Faith, D. P. 1992 Systematics and conservation: on predicting the feature diversity of subsets of taxa. Cladistics 12, 361-373. (doi:10.1111/j.1096-0031.1992.tb00078.x)
82. Keith, M., Chimimba, C. T., Reyers, B. & Jaarsveld, A. S. 2005 Taxonomic and phylogenetic distinctiveness in regional conservation assessments: a case study based on extant South African Chiroptera and Car-nivora. Anim. Conserv. 8, 279-288. (doi:10.1017/ S1367943005002192)
83. Schweiger, O., Klotz, S., Durka, W. & Kuhn, I. 2008 A comparative test of phylogenetic diversity indices. Oeco-logia 157, 485-495. (doi:10.1007/s00442-008-1082-2)
84. Pavoine, S., Love, M. S. & Bonsall, M. B. 2009 Hierarchical partitioning of evolutionary and ecological patterns in the organization of phylogenetically-struc-tured species assemblages: application to rockfish (genus: Sebastes) in the Southern California Bight. Ecol. Lett. 12, 898-908. (doi:10.1111/j.1461-0248. 2009.01344.x)
85. Allen, B., Kon, M. & Bar-Yam, Y. 2009 A new phylo-genetic diversity measure generalizing the Shannon Index and its application to Phyllostomid bats. Am. Nat. 174, 236-243. (doi:10.1086/600101)
86. Rao, C. R. 1982 Diversity and dissimilarity coefficients: a unified approach. Theoret. Popul. Biol. 21, 24-43. (doi:10.1016/0040-5809(82)90004-1)
87. Cadotte, M. W. & Davies, T. J. 2010 Rarest of the rare: advances in combining evolutionary distinctiveness and scarcity to inform conservation at biogeographical scales. Divers. Distrib. 16, 376-385. (doi:10.1111/j. 1472-4642.2010.00650.x)
88. Chao, A., Chiu, C. & Jost, L. 2010 Phylogenetic diversity measures based on Hill numbers. Phil. Trans. R. Soc. B 365, 3599-3609. (doi:10.1098/rstb. 2010.0272)
89. Cadotte, M. W., Davies, T. J., Regetz, J., Kembel, W. S., Cleland, E. & Oakley, T. H. 2010 Phylogenetic diversity metrics for ecological communities: integrating species richness, abundance and evolutionary history. Ecol. Lett. 13, 96-105. (doi:10.1111/j.1461-0248.2009.01405.x)
90. Crozier, R. H., Dunnett, L. J. & Agapow, P. 2005 Phy-logenetic biodiversity assessment based on systematic nomenclature. Evol. Bioinformatics Online 1, 11-36.
91. Faith, D. P. & Baker, A. M. 2006 Phylogenetic diversity (PD) and biodiversity conservation: some bio-informatics challenges. Evol. Bioinformatics Online 2, 121-128.
92. Pereira, H. M. et al. 2010 Scenarios for global biodiversity in the 21st century. Science 330, 1496-1501. (doi:10.1126/science.1196624)
93. Palmer, M. W. 1995 How should one count species? Natural Areas J. 15, 124-135.
94. Palmer, M. W., Earls, P. G., Hoagland, B. W., White, P. S. & Wohlgemuth, T. 2002 Quantitative tools for perfecting species lists. Environmetrics 13, 121-137. (doi:10.1002/env.516)
95. Connor, E. F. & McCoy, E. D. 1979 The statistics and biology of the species-area relationship. Am. Nat. 113, 791-833. (doi:10.1086/283438)
96. Palmer, M. W. & White, P. S. 1994 Scale dependence and the species-area relationship. Am. Nat. 144, 717-740. (doi:10.1086/285704)
97. Crawley, M. J. & Harral, J. E. 2001 Scale dependence in plant biodiversity. Science 291, 864-868. (doi:10.1126/ science.291.5505.864)
98. Condit, R., Hubbell, S. P., Lafrankie, J. V., Sukumar, R., Manokaran, R., Foster, R. B. & Ashton, P. S. 1996 Species-area and species-individual relationships for tropical trees: a comparison of three 50-ha plots. J. Ecol. 84, 549-562. (doi:10.2307/2261477)
99. Chiarucci, A., Bacaro, G., Rocchini, D., Ricotta, C., Palmer, M. W. & Scheiner, S. M. 2009 Spatially constrained rarefaction: incorporating the autocorrelated structure of biological communities into sample-based rarefaction. Commun. Ecol. 10, 209-214. (doi:10. 1556/ComEc.10.2009.2.11)
100. Keating, K. A. & Quinn, J. F. 1998 Estimating species richness: the Michaelis-Menten model revisited. Oikos 81, 411-416. (doi:10.2307/3547060)
101. Colwell, R. K., Mao, C. X. & Chang, J. 2004 Interpolating, extrapolating, and comparing incidence-based species accumulation curves. Ecology 85, 2717-2727. (doi:10.1890/03-0557)
102. Heltshe, J. F. & Forrester, N. E. 1983 Estimating species richness using the Jackknife procedure. Biometrics 39, 1-11. (doi:10.2307/2530802)
103. Burnham, K. P. & Overton, W. S. 1978 Estimation of the size of a closed population when probabilities vary among animals. Biometrika 65, 625-633. (doi:10. 1093/biomet/65.3.625)
104. Burnham, K. P. & Overton, W. S. 1979 Robust estimation of population size when capture probabilities vary among animals. Ecology 60, 927-936. (doi:10. 2307/1936861)
105. Chao, A. 1984 Nonparametric-estimation of the number of classes in a population. Scand. J. Stat. 11, 265-270.
106. Chao, A. 1987 Estimating the population size for capture-recapture data with unequal catchability. Biometrics 43, 783-791. (doi:10.2307/2531532)
107. Smith, E. P. & van Belle, G. 1984 Nonparametric estimation of species richness. Biometrics 40, 119-129. (doi:10.2307/2530750)
108. Chiarucci, A., Enright, N. J., Perry, G. L. W., Miller, B. P. & Lamont, B. B. 2003 Performance of nonparametric species richness estimators in a high diversity plant community. Divers. Distrib. 9, 283-295. (doi:10.1046/ j.1472-4642.2003.00027.x)
109. Skov, F. & Lawesson, J. 2000 Estimation of plant species richness from systematically placed plots in a managed forest ecosystem. Nord. J. Bot. 20, 477-483. (doi:10.1111/j.1756-1051.2000.tb01592.x)
110. Chiarucci, A., Maccherini, S. & De Dominicis, V. 2001 Evaluation and monitoring of the flora in a nature reserve by estimation methods. Biol. Conserv. 101, 305-314. (doi:10.1016/S0006-3207(01)00073-8)
111. D'Alessandro, L. & Fattorini, L. 2002 Resampling estimators of species richness from presence-absence data: why they don't work. Metron 61, 5-19.
112. Hwang, W. H. & Shen, T. J. 2010 Small-sample estimation of species richness applied to forest communities. Biometrics 66, 1052-1060. (doi:10.1111/j.1541-0420. 2009.01371.x)
113. Gross, K. L., Willig, M. R., Gough, L., Inouye, R. & Cox, S. B. 2000 Patterns of species density and productivity at different spatial scales in herbaceous plant communities. Oikos 89, 417-427. (doi:10.1034/j. 1600-0706.2000.890301.x)
114. Sanders, H.L. 1968 Marine benthic diversity: acompara-tivestudy. Am.Nat. 102, 243-282. (doi:10.1086/282541)
115. Gollies, N. J. & Colwell, R. W. 2001 Quantifying biodiversity: procedures and pitfalls in the measurement and comparison of species richness. Ecol. Lett. 4, 379-391. (doi:10.1046/j.1461-0248.2001.00230.x)
116. Palmer, M. W., McGlinn, D. J. & Fridley, J. D. 2008 Artifacts and artifictions in biodiversity research. Folia Geobot. 43, 245-257. (doi:10.1007/s12224-008-9012-y)
117. Tokeshi, M. 1993 Species abundance patterns and community structure. Adv. Ecol. Res. 24, 111-186. (doi:10.1016/S0065-2504(08)60042-2)
118. Chave, J., Muller-Landau, H. & Levin, S. 2002 Comparing classical community models: theoretical consequences for patterns of diversity. Am. Nat. 159, 1-23. (doi:10.1086/324112)
119. Green, J. L. & Plotkin, J. B. 2007 A statistical theory for sampling species abundances. Ecol. Lett. 10, 1037-1045. (doi:10.1111/j.1461-0248.2007.01101.x)
120. Chiarucci, A., Wilson, J. B., Anderson, B. J. & de Dominicis, V. 1999 Cover versus biomass as the estimate of abundance in examining plant community structure: does it make a difference to the conclusions. J. Veget. Sci. 10, 35-42. (doi:10.2307/3237158)
121. Magurran, A. E. & Henderson, P. A. 2003 Explaining the excess of rare species in natural species abundance distributions. Nature 422, 714-716. (doi:10.1038/ nature01547)
122. Rey Benayas, J. M., Scheiner, S. M., Sanchez-Colomer, M. G. & Levassor, C. 1999 Commonness and rarity: theory and application of a new model to Mediterranean montane grasslands. Conserv. Ecol. 3. See http://www.consecol.org/vol3/iss1/art5/.
123. Naeem, S. 2009 Ecology: gini in the bottle. Nature 458, 579-580. (doi:10.1038/458579a)
124. Ricklefs, R. 2011 Applying a regional community concept to forest birds of eastern North America. Proc. Natl Acad. Sci. USA 108, 2300-2305. (doi:10.1073/ pnas.1018642108)
125. McGeoch, M. A. & Gaston, K. J. 2002 Occupancy frequency distributions: patterns, artefacts and mechanisms. Biol. Rev. 77, 311-331.
126. Bossuyt, B., Honnay, O. & Hermy, M. 2004 Scale-dependent frequency distributions of plant species in dune slacks: dispersal and niche limitation. J. Veget. Sci. 15, 323-330. (doi:10.1111/j.1654-1103.2004. tb02268.x)
127. Ricklefs, R. 2008 Disintegration of the ecological community. Am. Nat. 172, 741-750. (doi:10.1086/593002)
128. Bacaro, G., Baragatti, E. & Chiarucci, A. 2009 Using taxonomic data to assess and monitor biodiversity: are the tribes still fighting? J. Environ. Monit. 11, 798-801. (doi:10.1039/b818171n)
129. Isaac, N. J. B., Mallet, J. & Mace, G. M. 2004 Taxo-nomic inflation: its influence on macroecology and conservation. Trends Ecol. Evol. 19, 464-469. (doi:10. 1016/j.tree.2004.06.004)
130. Marris, E. 2007 Linnaeus at 300: the species and the specious. Nature 446, 250-253. (doi:10.1038/446250a)
131. Pillon, Y. & Chase, M. W. 2007 Taxonomic exaggeration and its effects on orchid conservation. Conserv. Biol. 21, 263-265. (doi:10.1111/j.1523-1739.2006. 00573.x)
132. Vernooy, R., Haribabu, E., Muller, M. R., Vogel, J. H., Hebert, P. D. N., Schindel, D. E., Shimura, J. & Singer, G. A. C. 2010 Barcoding life to conserve biological diversity: beyond the taxonomic imperative. PLoS Biol. 8, e1000417. (doi:10.1371/journal.pbio.1000417)
133. Rodrigues, A. S. L. & Gaston, K. J. 2002 Maximising phylogenetic diversity in the selection of networks of conservation areas. Biol. Conserv. 105, 103-111. (doi:10.1016/S0006-3207(01)00208-7)
134. Kelt, D. A. & Brown, J. H. 2009 Species as unit of analysis in ecology and biogeography: are the blind leading the blind? Glob. Ecol. Biogeogr. 9, 213-217. (doi:10.1046/j.1365-2699.2000.00199.x)
135. Mac Nally, R. & Fleishman, E. 2004 A successful predictive model of species richness based on indicator species. Conserv. Biol. 18, 646-654. (doi:10.1111/j. 1523-1739.2004.00328_18_3.x)
136. Martins, S., Sanderson, J. & Silva-Junior, J. 2007 Monitoring mammals in the Caxiuanu National Forest, Brazil: first results from the Tropical Ecology, Assessment and Monitoring (TEAM) program. Biodivers. Conserv. 16, 857-870. (doi:10.1007/s10531-006-9094-x)
137. Valentini, A., Pompanon, F. & Taberlet, P. 2009 DNA barcoding for ecologists. Trends Ecol. Evol. 24, 110-117. (doi:10.1016/j.tree.2008.09.011)