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Volumn 365, Issue 1558, 2010, Pages 3599-3609

Phylogenetic diversity measures based on Hill numbers

Author keywords

Doubling property; Hill numbers; Phylogenetic diversity; Replication principle; Species neutral diversity; Taxonomic diversity

Indexed keywords

ABUNDANCE; ENTROPY; PHYLOGENETICS; RELATEDNESS; TAXONOMY;

EID: 78650407057     PISSN: 09628436     EISSN: 14712970     Source Type: Journal    
DOI: 10.1098/rstb.2010.0272     Document Type: Article
Times cited : (278)

References (50)
  • 1
    • 70149113478 scopus 로고    scopus 로고
    • A new phylogenetic diversity measure generalizing the Shannon index and its application to phyllostomid bats
    • doi:10.1086/600101
    • Allen, B., Kon, M. & Bar-Yam, Y. 2009 A new phylogenetic diversity measure generalizing the Shannon index and its application to phyllostomid bats. Am. Nat. 174, 236-243. (doi:10.1086/600101)
    • (2009) Am. Nat. , vol.174 , pp. 236-243
    • Allen, B.1    Kon, M.2    Bar-Yam, Y.3
  • 2
    • 72949108886 scopus 로고    scopus 로고
    • Phylogenetic diversity metrics for ecological communities: Integrating species richness, abundance and evolutionary history
    • doi:10.1111/j.1461-0248.2009.01405.x
    • Cadotte, M. W., Davies, T. J., Regetz, J., Kembel, S. W., Clevand, E. & Oakley, T. 2010 Phylogenetic diversity metrics for ecological communities: integrating species richness, abundance and evolutionary history. Ecol. Lett. 13, 96-105. (doi:10.1111/j.1461-0248.2009.01405.x)
    • (2010) Ecol. Lett. , vol.13 , pp. 96-105
    • Cadotte, M.W.1    Davies, T.J.2    Regetz, J.3    Kembel, S.W.4    Clevand, E.5    Oakley, T.6
  • 3
    • 66349134056 scopus 로고    scopus 로고
    • The merging of community ecology and phylogenetic biology
    • doi:10. 1111/j.1461-0248.2009.01314.x
    • Cavender-Bares, J., Kozak, K. H., Fine, P. V. A. & Kembel, S. W. 2009 The merging of community ecology and phylogenetic biology. Ecol. Lett. 12, 693-715. (doi:10. 1111/j.1461-0248.2009.01314.x)
    • (2009) Ecol. Lett. , vol.12 , pp. 693-715
    • Cavender-Bares, J.1    Kozak, K.H.2    Fine, P.V.A.3    Kembel, S.W.4
  • 4
    • 85020781725 scopus 로고    scopus 로고
    • Diversity measures
    • (eds A. Hastings & L. Gross). Berkeley, CA: University of California Press
    • Chao, A. & Jost, L. 2011 Diversity measures. In Sourcebook in theoretical ecology (eds A. Hastings & L. Gross). Berkeley, CA: University of California Press.
    • (2011) Sourcebook in Theoretical Ecology
    • Chao, A.1    Jost, L.2
  • 7
    • 0026565163 scopus 로고
    • Genetic diversity and the agony of choice
    • doi:10.1016/0006-3207(92)91202-4
    • Crozier, R. H. 1992 Genetic diversity and the agony of choice. Biol. Conserv. 61, 11-15. (doi:10.1016/0006-3207(92)91202-4)
    • (1992) Biol. Conserv. , vol.61 , pp. 11-15
    • Crozier, R.H.1
  • 8
    • 0031468030 scopus 로고    scopus 로고
    • Preserving the information content of species: Genetic diversity, phylogeny, and conservation worth
    • doi:10. 1146/annurev.ecolsys.28.1.243
    • Crozier, R. H. 1997 Preserving the information content of species: genetic diversity, phylogeny, and conservation worth. Annu. Rev. Ecol. Syst. 28, 243-268. (doi:10. 1146/annurev.ecolsys.28.1.243)
    • (1997) Annu. Rev. Ecol. Syst. , vol.28 , pp. 243-268
    • Crozier, R.H.1
  • 9
    • 0026499429 scopus 로고
    • Conservation evaluation and phylogenetic diversity
    • doi:10.1016/0006-3207(92)91201-3
    • Faith, D. P. 1992 Conservation evaluation and phylogenetic diversity. Biol. Conserv. 61, 1-10. (doi:10.1016/0006-3207(92)91201-3)
    • (1992) Biol. Conserv. , vol.61 , pp. 1-10
    • Faith, D.P.1
  • 10
    • 0028782143 scopus 로고
    • Phylogenetic pattern and the quantification of organismal biodiversity
    • doi:10.1098/rstb.1994.0085
    • Faith, D. P. 1994 Phylogenetic pattern and the quantification of organismal biodiversity. Phil. Trans. R. Soc. Lond. B 345, 45-58. (doi:10.1098/rstb.1994.0085)
    • (1994) Phil. Trans. R. Soc. Lond. B , vol.345 , pp. 45-58
    • Faith, D.P.1
  • 11
    • 0036185335 scopus 로고    scopus 로고
    • Quantifying biodiversity: A phylogenetic perspective
    • DOI 10.1046/j.1523-1739.2002.00503.x
    • Faith, D. P. 2002 Quantifying biodiversity: a phylogenetic perspective. Conserv. Biol. 16, 248-252. (doi:10.1046/j.1523-1739.2002.00503.x) (Pubitemid 34190447)
    • (2002) Conservation Biology , vol.16 , Issue.1 , pp. 248-252
    • Faith, D.P.1
  • 13
    • 49649122039 scopus 로고    scopus 로고
    • Interpreting and estimating measures of community phylogenetic structuring
    • doi:10.1111/j.1365-2745.2008.01423.x
    • Hardy, O. J. & Jost, L. 2008 Interpreting and estimating measures of community phylogenetic structuring. J. Ecol. 96, 849-852. (doi:10.1111/j.1365- 2745.2008.01423.x)
    • (2008) J. Ecol. , vol.96 , pp. 849-852
    • Hardy, O.J.1    Jost, L.2
  • 14
    • 34247226174 scopus 로고    scopus 로고
    • Characterizing the phylogenetic structure of communities by an additive partitioning of phylogenetic diversity
    • DOI 10.1111/j.1365-2745.2007.01222.x
    • Hardy, O. J. & Senterre, B. 2007 Characterizing the phylogenetic structure of communities by an additive partitioning of phylogenetic diversity. J. Ecol. 95, 493-506. (doi:10.1111/j.1365-2745.2007.01222.x) (Pubitemid 46624078)
    • (2007) Journal of Ecology , vol.95 , Issue.3 , pp. 493-506
    • Hardy, O.J.1    Senterre, B.2
  • 15
    • 0000006498 scopus 로고
    • Diversity and evenness: A unifying notation and its consequences
    • doi:10.2307/1934352
    • Hill, M. O. 1973 Diversity and evenness: a unifying notation and its consequences. Ecology 54, 427-431. (doi:10.2307/1934352)
    • (1973) Ecology , vol.54 , pp. 427-431
    • Hill, M.O.1
  • 16
    • 0000752502 scopus 로고
    • The nonconcept of diversity: A critique and alternative parameters
    • doi:10.2307/1934145
    • Hulbert, S. 1971 The nonconcept of diversity: a critique and alternative parameters. Ecology 52, 577-586. (doi:10.2307/1934145)
    • (1971) Ecology , vol.52 , pp. 577-586
    • Hulbert, S.1
  • 17
    • 0034210820 scopus 로고    scopus 로고
    • A link between ecological diversity indices and measures of biodiversity
    • DOI 10.1016/S0304-3800(00)00203-9, PII S0304380000002039
    • Izsák, J. & Papp, L. 2000 A link between ecological diversity indices and measures of biodiversity. Ecol. Model. 130, 151-156. (doi:10.1016/S0304-3800(00)00203-9) (Pubitemid 30491519)
    • (2000) Ecological Modelling , vol.130 , Issue.1-3 , pp. 151-156
    • Izsak, J.1    Papp, L.2
  • 18
    • 33646876613 scopus 로고    scopus 로고
    • Entropy and diversity
    • DOI 10.1111/j.2006.0030-1299.14714.x
    • Jost, L. 2006 Entropy and diversity. Oikos 113, 363-375. (doi:10.1111/j.2006.0030-1299.14714.x) (Pubitemid 43781677)
    • (2006) Oikos , vol.113 , Issue.2 , pp. 363-375
    • Jost, L.1
  • 19
    • 38449096471 scopus 로고    scopus 로고
    • Partitioning diversity into independent alpha and beta components
    • DOI 10.1890/06-1736.1
    • Jost, L. 2007 Partitioning diversity into independent alpha and beta components. Ecology 88, 2427-2439. (doi:10.1890/06-1736.1) (Pubitemid 351345099)
    • (2007) Ecology , vol.88 , Issue.10 , pp. 2427-2439
    • Jost, L.1
  • 20
    • 51649095312 scopus 로고    scopus 로고
    • GST and its relatives do not measure differentiation
    • doi:10.1111/j.1365-294X.2008.03887.x
    • Jost, L. 2008 GST and its relatives do not measure differentiation. Mol. Ecol. 17, 4015-4026. (doi:10.1111/j.1365-294X.2008.03887.x)
    • (2008) Mol. Ecol. , vol.17 , pp. 4015-4026
    • Jost, L.1
  • 21
    • 65549120026 scopus 로고    scopus 로고
    • Mismeasuring biological diversity: Response to Hoffman and Hoffman (2008)
    • doi:10.1016/j.ecolecon.2008.10.015
    • Jost, L. 2009 Mismeasuring biological diversity: response to Hoffman and Hoffman (2008). Ecol. Econ. 68, 925-927. (doi:10.1016/j.ecolecon.2008.10.015)
    • (2009) Ecol. Econ. , vol.68 , pp. 925-927
    • Jost, L.1
  • 22
    • 84873728229 scopus 로고    scopus 로고
    • eparation, London, UK: Taylor and Francis
    • Jost, L. & Chao, A. In preparation. Diversity analysis. London, UK: Taylor and Francis.
    • Diversity Analysis
    • Jost, L.1    Chao, A.2
  • 23
    • 74549118297 scopus 로고    scopus 로고
    • Partitioning diversity for conservation analyses
    • doi:10.1111/j.1472-4642.2009.00626.x
    • Jost, L., DeVries, P., Walla, T., Greeney, H., Chao, A. & Ricotta, C. 2010 Partitioning diversity for conservation analyses. Divers. Distrib. 16, 65-76. (doi:10.1111/j.1472-4642.2009.00626.x)
    • (2010) Divers. Distrib. , vol.16 , pp. 65-76
    • Jost, L.1    Devries, P.2    Walla, T.3    Greeney, H.4    Chao, A.5    Ricotta, C.6
  • 24
    • 0000258972 scopus 로고
    • Patterns of species diversity
    • doi:10.1111/j.1469-185X.1965.tb00815.x
    • MacArthur, R. H. 1965 Patterns of species diversity. Biol. Rev. 40, 510-533. (doi:10.1111/j.1469-185X.1965.tb00815.x)
    • (1965) Biol. Rev. , vol.40 , pp. 510-533
    • MacArthur, R.H.1
  • 27
    • 4043166893 scopus 로고    scopus 로고
    • No trivial pursuit
    • doi:10.1641/0006-3568(2004)054[0720:NTP]2.0.CO;2
    • Nanney, D. L. 2004 No trivial pursuit. Bioscience 54, 720-721. (doi:10.1641/0006-3568(2004)054[0720:NTP]2.0.CO;2)
    • (2004) Bioscience , vol.54 , pp. 720-721
    • Nanney, D.L.1
  • 28
    • 84950435064 scopus 로고
    • Diversity as a concept and its measurement
    • doi:10.2307/2287709
    • Patil, G. P. & Taillie, C. 1982 Diversity as a concept and its measurement. J. Am. Stat. Assoc. 77, 548-567. (doi:10.2307/2287709)
    • (1982) J. Am. Stat. Assoc. , vol.77 , pp. 548-567
    • Patil, G.P.1    Taillie, C.2
  • 29
    • 68849130477 scopus 로고    scopus 로고
    • Hierarchical partitioning of evolutionary and ecological patterns in the organization of phylogenetically-structured species assemblages: Applications to rockfish (genus: Sebastes) in the Southern California Bight
    • doi:10.1111/j.1461-0248.2009.01344.x
    • Pavoine, S., Love, M. S. & Bonsall, M. B. 2009 Hierarchical partitioning of evolutionary and ecological patterns in the organization of phylogenetically-structured species assemblages: applications to rockfish (genus: Sebastes) in the Southern California Bight. Ecol. Lett. 12, 898-908. (doi:10.1111/j.1461-0248.2009.01344.x)
    • (2009) Ecol. Lett. , vol.12 , pp. 898-908
    • Pavoine, S.1    Love, M.S.2    Bonsall, M.B.3
  • 30
    • 0001338773 scopus 로고
    • The measurement of species diversity
    • doi:10.1146/annurev.es.05.110174.001441
    • Peet, R. K. 1974 The measurement of species diversity. Annu. Rev. Ecol. Syst. 5, 285-307. (doi:10.1146/annurev.es.05.110174.001441)
    • (1974) Annu. Rev. Ecol. Syst. , vol.5 , pp. 285-307
    • Peet, R.K.1
  • 31
    • 0036098711 scopus 로고    scopus 로고
    • Functional diversity (FD), species richness and community composition
    • DOI 10.1046/j.1461-0248.2002.00339.x
    • Petchey, O. L. & Gaston, K. J. 2002 Functional diversity (FD), species richness and community composition. Ecol. Lett. 5, 402-411. (doi:10.1046/j.1461-0248.2002.00339.x) (Pubitemid 34523107)
    • (2002) Ecology Letters , vol.5 , Issue.3 , pp. 402-411
    • Petchey, O.L.1    Gaston, K.J.2
  • 33
    • 0034636486 scopus 로고    scopus 로고
    • Getting the measure of biodiversity
    • DOI 10.1038/35012221
    • Purvis, A. & Hector, A. 2000 Getting the measure of biodiversity. Nature 405, 212-219. (doi:10.1038/35012221) (Pubitemid 30313544)
    • (2000) Nature , vol.405 , Issue.6783 , pp. 212-219
    • Purvis, A.1    Hector, A.2
  • 34
    • 0003143622 scopus 로고
    • Diversity and dissimilarity coefficients: A unified approach
    • doi:10.1016/0040-5809(82)90004-1
    • Rao, C. R. 1982 Diversity and dissimilarity coefficients: a unified approach. Theor. Popul. Biol. 21, 24-43. (doi:10.1016/0040-5809(82)90004-1)
    • (1982) Theor. Popul. Biol. , vol.21 , pp. 24-43
    • Rao, C.R.1
  • 35
    • 33749443207 scopus 로고    scopus 로고
    • Towards a unifying approach to diversity measures: Bridging the gap between the Shannon entropy and Rao's quadratic index
    • DOI 10.1016/j.tpb.2006.06.003, PII S004058090600075X
    • Ricotta, C. & Szeidl, L. 2006 Towards a unifying approach to diversity measures: bridging the gap between the Shannon entropy and Rao's quadratic index. Theor. Popul. Biol. 70, 237-243. (doi:10.1016/j.tpb.2006.06. 003) (Pubitemid 44508696)
    • (2006) Theoretical Population Biology , vol.70 , Issue.3 , pp. 237-243
    • Ricotta, C.1    Szeidl, L.2
  • 36
    • 70449528633 scopus 로고    scopus 로고
    • Diversity partition of Rao's quadratic entropy
    • doi:10.1016/j.tpb.2009.10.001
    • Ricotta, C. & Szeidl, L. 2009 Diversity partition of Rao's quadratic entropy. Theor. Popul. Biol. 76, 299-302. (doi:10.1016/j.tpb.2009.10.001)
    • (2009) Theor. Popul. Biol. , vol.76 , pp. 299-302
    • Ricotta, C.1    Szeidl, L.2
  • 37
    • 0018383566 scopus 로고
    • Diversity indices: Which ones are admissible
    • doi:10.1016/0022-5193(79)90015-8
    • Routledge, R. D. 1979 Diversity indices: which ones are admissible. J. Theor. Biol. 76, 503-515. (doi:10.1016/0022-5193(79)90015-8)
    • (1979) J. Theor. Biol. , vol.76 , pp. 503-515
    • Routledge, R.D.1
  • 38
    • 0034998807 scopus 로고    scopus 로고
    • On the measurement of species diversity incorporating species differences
    • doi:10.1034/j.1600-0706.2001.930115.x
    • Shimatani, K. 2001 On the measurement of species diversity incorporating species differences. Oikos 93, 135-147. (doi:10.1034/j.1600-0706.2001.930115.x)
    • (2001) Oikos , vol.93 , pp. 135-147
    • Shimatani, K.1
  • 39
    • 0028684609 scopus 로고
    • Measuring biological diversity
    • doi:10.1007/BF02426650
    • Solow, A. R. & Polasky, S. 1994 Measuring biological diversity. Environ. Ecol. Stat. 1, 95-107. (doi:10.1007/BF02426650)
    • (1994) Environ. Ecol. Stat. , vol.1 , pp. 95-107
    • Solow, A.R.1    Polasky, S.2
  • 40
    • 0003093954 scopus 로고
    • On the measurement of biological diversity
    • doi:10.1006/jeem.1993.1004
    • Solow, A. R., Polasky, S. & Broadus, J. 1993 On the measurement of biological diversity. J. Environ. Econ. Manage. 24, 60-68. (doi:10.1006/jeem. 1993.1004)
    • (1993) J. Environ. Econ. Manage. , vol.24 , pp. 60-68
    • Solow, A.R.1    Polasky, S.2    Broadus, J.3
  • 41
    • 33646516485 scopus 로고
    • Possible generalization of Boltzmann- Gibbs statistics
    • Tsallis, C. 1988 Possible generalization of Boltzmann- Gibbs statistics. J. Stat. Phys. 52, 480-487.
    • (1988) J. Stat. Phys. , vol.52 , pp. 480-487
    • Tsallis, C.1
  • 42
    • 0026076942 scopus 로고
    • What to protect: Systematics and the agony of choice
    • doi:10.1016/0006-3207(91)90030-D
    • Vane-Wright, R. I., Humphries, C. J. & Williams, P. M. 1991 What to protect: systematics and the agony of choice. Biol. Conserv. 55, 235-254. (doi:10.1016/0006-3207(91)90030-D)
    • (1991) Biol. Conserv. , vol.55 , pp. 235-254
    • Vane-Wright, R.I.1    Humphries, C.J.2    Williams, P.M.3
  • 44
    • 0029477712 scopus 로고
    • New 'biodiversity' measures reveal a decrease in taxonomic distinctness with increasing stress
    • doi:10.3354/meps129301
    • Warwick, R. M. & Clarke, K. R. 1995 New 'biodiversity' measures reveal a decrease in taxonomic distinctness with increasing stress. Mar. Ecol. Prog. Ser. 129, 301-305. (doi:10.3354/meps129301)
    • (1995) Mar. Ecol. Prog. Ser. , vol.129 , pp. 301-305
    • Warwick, R.M.1    Clarke, K.R.2
  • 45
    • 0033929368 scopus 로고    scopus 로고
    • Exploring the phylogenetic structure of ecological communities: An example for rain forest trees
    • DOI 10.1086/303378
    • Webb, C. O. 2000 Exploring the phylogenetic structure of ecological communities: an example from rain forest trees. Am. Nat. 156, 145-156. (doi:10.1086/303378) (Pubitemid 30471519)
    • (2000) American Naturalist , vol.156 , Issue.2 , pp. 145-155
    • Webb, C.O.1
  • 46
    • 14844350168 scopus 로고    scopus 로고
    • Phylomatic: Tree assembly for applied phylogenetics
    • doi:10.1111/j.1471-8286.2004.00829.x
    • Webb, C. O. & Donoghue, M. J. 2004 Phylomatic: tree assembly for applied phylogenetics. Mol. Ecol. Notes 5, 181-183. (doi:10.1111/j.1471-8286. 2004.00829.x)
    • (2004) Mol. Ecol. Notes , vol.5 , pp. 181-183
    • Webb, C.O.1    Donoghue, M.J.2
  • 47
    • 33644820290 scopus 로고    scopus 로고
    • Diversity measurement combining relative abundances and taxonomic distinctiveness of species
    • DOI 10.1111/j.1366-9516.2006.00234.x
    • Weikard, H. P., Punt, M. & Wessler, J. 2006 Diversity measurement combining relative abundances and taxonomic distinctiveness of species. Divers. Distrib. 12, 215-217. (doi:10.1111/j.1366-9516.2006.00234.x) (Pubitemid 43356917)
    • (2006) Diversity and Distributions , vol.12 , Issue.2 , pp. 215-217
    • Weikard, H.-P.1    Punt, M.2    Wesseler, J.3
  • 48
    • 84960589504 scopus 로고
    • On diversity
    • doi:10.2307/2118476
    • Weitzman, M. L. 1992 On diversity. Q. J. Econ. 107, 363-405. (doi:10.2307/2118476)
    • (1992) Q. J. Econ. , vol.107 , pp. 363-405
    • Weitzman, M.L.1
  • 49
    • 0000300892 scopus 로고    scopus 로고
    • The Noah's Ark problem
    • doi:10.2307/2999617
    • Weitzman, M. L. 1998 The Noah's Ark problem. Econometrica 66, 1279-1298. (doi:10.2307/2999617)
    • (1998) Econometrica , vol.66 , pp. 1279-1298
    • Weitzman, M.L.1
  • 50
    • 0000594195 scopus 로고
    • Evolution and measurement of species diversity
    • Whittaker, R. H. 1972 Evolution and measurement of species diversity. Taxon 12, 213-251.
    • (1972) Taxon , vol.12 , pp. 213-251
    • Whittaker, R.H.1


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