-
1
-
-
33744619111
-
-
IUPAP.
-
IUPAP, Physica (Amsterdam) 93A, 1 (1978).
-
(1978)
Physica (Amsterdam)
, vol.93
, pp. 1
-
-
-
4
-
-
77951210462
-
-
10.1002/prot.22687
-
N. Singh and A. Warshel, Proteins 78, 1705 (2010). 10.1002/prot.22687
-
(2010)
Proteins
, vol.78
, pp. 1705
-
-
Singh, N.1
Warshel, A.2
-
5
-
-
1842854171
-
-
10.1063/1.1740193
-
R. W. Zwanzig, J. Chem. Phys. 22, 1420 (1954). 10.1063/1.1740193
-
(1954)
J. Chem. Phys.
, vol.22
, pp. 1420
-
-
Zwanzig, R.W.1
-
8
-
-
0037234043
-
-
10.1002/bi10270
-
H. Gouda, I. D. Kuntz, D. A. Case, and P. A. Kollman, Biopolymers 68, 16 (2003). 10.1002/bip.10270
-
(2003)
Biopolymers
, vol.68
, pp. 16
-
-
Gouda, H.1
Kuntz, I.D.2
Case, D.A.3
Kollman, P.A.4
-
9
-
-
33646471468
-
-
10.1063/1.1749657
-
J. G. Kirkwood, J. Chem. Phys. 3, 300 (1935). 10.1063/1.1749657
-
(1935)
J. Chem. Phys.
, vol.3
, pp. 300
-
-
Kirkwood, J.G.1
-
10
-
-
34248388140
-
Enveloping distribution sampling: A method to calculate free energy differences from a single simulation
-
DOI 10.1063/1.2730508
-
C. D. Christ and W. F. van Gunsteren, J. Chem. Phys. 126, 184110 (2007). 10.1063/1.2730508 (Pubitemid 46743610)
-
(2007)
Journal of Chemical Physics
, vol.126
, Issue.18
, pp. 184110
-
-
Christ, C.D.1
Van Gunsteren, W.F.2
-
11
-
-
43149089846
-
Multiple free energies from a single simulation: Extending enveloping distribution sampling to nonoverlapping phase-space distributions
-
DOI 10.1063/1.2913050
-
C. D. Christ and W. F. van Gunsteren, J. Chem. Phys. 128, 174112 (2008). 10.1063/1.2913050 (Pubitemid 351644886)
-
(2008)
Journal of Chemical Physics
, vol.128
, Issue.17
, pp. 174112
-
-
Christ, C.D.1
Van Gunsteren, W.F.2
-
17
-
-
0003544049
-
-
(vdf Hochschulverlag AG an der ETH Zurich, Zurich, Groningen).
-
W. F. van Gunsteren, S. R. Billeter, A. A. Eising, P. H. Hnenberger, P. Krger, A. E. Mark, W. R. P. Scott, and I. G. Tironi, Biomolecular Simulation: The GROMOS96 Manual and User Guide (vdf Hochschulverlag AG an der ETH Zurich, Zurich, Groningen, 1996).
-
(1996)
Biomolecular Simulation: The GROMOS96 Manual and User Guide
-
-
Van Gunsteren, W.F.1
Billeter, S.R.2
Eising, A.A.3
Hnenberger, P.H.4
Krger, P.5
Mark, A.E.6
Scott, W.R.P.7
Tironi, I.G.8
-
18
-
-
0008819754
-
-
10.1021/jp984217f
-
W. R. P. Scott, P. H. Hnenberger, I. G. Tironi, A. E. Mark, S. R. Billeter, J. Fennen, A. E. Torda, T. Huber, P. Krger, and W. F. van Gunsteren, J. Phys. Chem. A 103, 3596 (1999). 10.1021/jp984217f
-
(1999)
J. Phys. Chem. A
, vol.103
, pp. 3596
-
-
Scott, W.R.P.1
Hnenberger, P.H.2
Tironi, I.G.3
Mark, A.E.4
Billeter, S.R.5
Fennen, J.6
Torda, A.E.7
Huber, T.8
Krger, P.9
Van Gunsteren, W.F.10
-
19
-
-
30444448249
-
The GROMOS software for biomolecular simulation: GROMOS05
-
DOI 10.1002/jcc.20303
-
M. Christen, P. H. Hnenberger, D. Bakowies, R. Baron, R. Brgi, D. P. Geerke, T. N. Heinz, M. A. Kastenholz, V. Krutler, C. Oostenbrink, C. Peter, D. Trzesniak, and W. F. van Gunsteren, J. Comput. Chem. 26, 1719 (2005). 10.1002/jcc.20303 (Pubitemid 43076183)
-
(2005)
Journal of Computational Chemistry
, vol.26
, Issue.16
, pp. 1719-1751
-
-
Christen, M.1
Hunenberger, P.H.2
Bakowies, D.3
Baron, R.4
Burgi, R.5
Geerke, D.P.6
Heinz, T.N.7
Kastenholz, M.A.8
Krautler, V.9
Oostenbrink, C.10
Peter, C.11
Trzesniak, D.12
Van Gunsteren, W.F.13
-
20
-
-
79960492809
-
-
See supplementary material at E-JCPSA6-135-027125 for further information on topologies, thermodynamic cycle closure, and ligand-protein complexes.
-
See supplementary material at http://dx.doi.org/10.1063/1.3604534 E-JCPSA6-135-027125 for further information on topologies, thermodynamic cycle closure, and ligand-protein complexes.
-
-
-
-
21
-
-
0024365336
-
-
10.1126/science.2727695
-
J. Gao, K. Kuczera, B. Tidor, and M. Karplus, Science 244, 1069 (1989). 10.1126/science.2727695
-
(1989)
Science
, vol.244
, pp. 1069
-
-
Gao, J.1
Kuczera, K.2
Tidor, B.3
Karplus, M.4
-
22
-
-
0009235161
-
-
10.1021/j100056a020
-
D. A. Pearlman, J. Phys. Chem. 98, 1487 (1994). 10.1021/j100056a020
-
(1994)
J. Phys. Chem.
, vol.98
, pp. 1487
-
-
Pearlman, D.A.1
-
25
-
-
0034798636
-
Getting the adrenaline going: Crystal structure of the adrenaline-synthesizing enzyme PNMT
-
DOI 10.1016/S0969-2126(01)00662-1, PII S0969212601006621
-
J. L. Martin, J. Begun, M. J. McLeish, J. M. Caine, and G. L. Grunewald, Structure (London) 9, 977 (2001). 10.1016/S0969-2126(01)00662-1 (Pubitemid 32972163)
-
(2001)
Structure
, vol.9
, Issue.10
, pp. 977-985
-
-
Martin, J.L.1
Begun, J.2
McLeish, M.J.3
Caine, J.M.4
Grunewald, G.L.5
-
26
-
-
29344454702
-
Mode of binding of methyl acceptor substrates to the adrenaline- synthesizing enzyme phenylethanolamine N-methyltransferase: Implications for catalysis
-
DOI 10.1021/bi051636b
-
C. L. Gee, J. D. Tyndall, G. L. Grunewald, Q. Wu, M. J. McLeish, and J. L. Martin, Biochemistry 44, 16875 (2005). 10.1021/bi051636b (Pubitemid 43007216)
-
(2005)
Biochemistry
, vol.44
, Issue.51
, pp. 16875-16885
-
-
Gee, C.L.1
Tyndall, J.D.A.2
Grunewald, G.L.3
Wu, Q.4
McLeish, M.J.5
Martin, J.L.6
-
27
-
-
33748550689
-
Comparison of the binding of 3-fluoromethyl-7-sulfonyl-1,2,3,4- tetrahydroisoquinolines with their isosteric sulfonamides to the active site of phenylethanolamine N-methyltransferase
-
DOI 10.1021/jm060466d
-
G. L. Grunewald, M. R. Seim, R. C. Regier, J. L. Martin, C. L. Gee, N. Drinkwater, and K. R. Criscione, J. Med. Chem. 49, 5424 (2006). 10.1021/jm060466d (Pubitemid 44373175)
-
(2006)
Journal of Medicinal Chemistry
, vol.49
, Issue.18
, pp. 5424-5433
-
-
Grunewald, G.L.1
Seim, M.R.2
Regier, R.C.3
Martin, J.L.4
Gee, C.L.5
Drinkwater, N.6
Criscione, K.R.7
-
28
-
-
34948851830
-
Enzyme adaptation to inhibitor binding: A cryptic binding site in phenylethanolamine N-methyltransferase
-
DOI 10.1021/jm0703385
-
C. L. Gee, N. Drinkwater, J. D. Tyndall, G. L. Grunewald, Q. Wu, M. J. McLeish, and J. L. Martin, J. Med. Chem. 50, 4845 (2007). 10.1021/jm0703385 (Pubitemid 47525469)
-
(2007)
Journal of Medicinal Chemistry
, vol.50
, Issue.20
, pp. 4845-4853
-
-
Gee, C.L.1
Drinkwater, N.2
Tyndall, J.D.A.3
Grunewald, G.L.4
Wu, Q.5
McLeish, M.J.6
Martin, J.L.7
-
30
-
-
0033519730
-
2-adrenoceptor(1a)
-
DOI 10.1021/jm9807252
-
G. L. Grunewald, V. H. Dahanukar, B. Teoh, and K. R. Criscione, J. Med. Chem. 42, 1982 (1999). 10.1021/jm9807252 (Pubitemid 29269631)
-
(1999)
Journal of Medicinal Chemistry
, vol.42
, Issue.11
, pp. 1982-1990
-
-
Grunewald, G.L.1
Dahanukar, V.H.2
Teoh, B.3
Criscione, K.R.4
-
31
-
-
38049048188
-
-
10.1016/j.bmc.2007.08.066
-
G. L. Grunewald, M. R. Seim, S. R. Bhat, M. E. Wilson, and K. R. Criscione, Bioorg. Med. Chem. 16, 542 (2008). 10.1016/j.bmc.2007.08.066
-
(2008)
Bioorg. Med. Chem.
, vol.16
, pp. 542
-
-
Grunewald, G.L.1
Seim, M.R.2
Bhat, S.R.3
Wilson, M.E.4
Criscione, K.R.5
-
32
-
-
4444282928
-
-
10.1002/jcc.20090
-
C. Oostenbrink, A. Villa, A. E. Mark, and W. F. van Gunsteren, J. Comp. Chem. 25, 1656 (2004). 10.1002/jcc.20090
-
(2004)
J. Comp. Chem.
, vol.25
, pp. 1656
-
-
Oostenbrink, C.1
Villa, A.2
Mark, A.E.3
Van Gunsteren, W.F.4
-
34
-
-
33750587438
-
-
10.1063/1.448118
-
H. J. C. Berendsen, J. P. M. Postma, W. F. van Gunsteren, A. DiNola, and J. R. Haak, J. Chem. Phys. 81, 1517 (1984). 10.1063/1.448118
-
(1984)
J. Chem. Phys.
, vol.81
, pp. 1517
-
-
Berendsen, H.J.C.1
Postma, J.P.M.2
Van Gunsteren, W.F.3
Dinola, A.4
Haak, J.R.5
-
36
-
-
0033954256
-
-
10.1093/nar/28.1.235
-
H. M. Berman, J. Westbrook, Z. Feng, G. Gilliland, T. N. Bhat, H. Weissig, I. N. Shindyalov, and P. E. Bourne, Nucleic Acids Res. 28, 235 (2006). 10.1093/nar/28.1.235
-
(2006)
Nucleic Acids Res.
, vol.28
, pp. 235
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
Weissig, H.6
Shindyalov, I.N.7
Bourne, P.E.8
-
37
-
-
4544369164
-
-
10.1063/1.469273
-
I. G. Tironi, R. Sperb, P. E. Smith, and W. F. van Gunsteren, J. Chem. Phys. 102, 5451 (1995). 10.1063/1.469273
-
(1995)
J. Chem. Phys.
, vol.102
, pp. 5451
-
-
Tironi, I.G.1
Sperb, R.2
Smith, P.E.3
Van Gunsteren, W.F.4
-
38
-
-
0035878765
-
Comparison of four methods to compute the dielectric permittivity of liquids from molecular dynamics simulations
-
DOI 10.1063/1.1379764
-
T. N. Heinz, W. F. van Gunsteren, and P. H. Hnenberger, J. Chem. Phys. 115, 1125 (2001). 10.1063/1.1379764 (Pubitemid 32699300)
-
(2001)
Journal of Chemical Physics
, vol.115
, Issue.3
, pp. 1125-1136
-
-
Heinz, T.N.1
Van Gunsteren, W.F.2
Hunenberger, P.H.3
-
40
-
-
0000249851
-
-
10.1016/0009-2614(94)00397-1
-
T. B. Beutler, A. E. Mark, R. C. van Schaik, P. R. Gerber, and W. F. van Gunsteren, Chem. Phys. Lett. 222, 529 (1994). 10.1016/0009-2614(94)00397-1
-
(1994)
Chem. Phys. Lett.
, vol.222
, pp. 529
-
-
Beutler, T.B.1
Mark, A.E.2
Van Schaik, R.C.3
Gerber, P.R.4
Van Gunsteren, W.F.5
-
42
-
-
0006783264
-
-
10.1016/0022-2860(85)80152-6
-
A. Almenningen, J. Brunvoll, M. V. Popik, S. V. Sokolkov, L. V. Vilkov, and S. Samdal, J. Mol. Struct. 127, 85 (1985). 10.1016/0022-2860(85)80152-6
-
(1985)
J. Mol. Struct.
, vol.127
, pp. 85
-
-
Almenningen, A.1
Brunvoll, J.2
Popik, M.V.3
Sokolkov, S.V.4
Vilkov, L.V.5
Samdal, S.6
|