Comprehensive cross production system assessment of the impact of in vitro microenvironment on the expression of messengers and long non-coding RNAs in the bovine blastocyst

Reproduction

Volumn 142, Issue 1, 2011, Pages 99-112

  Côté, Isabelle ^a   Vigneault, Christian ^b   Laflamme, Isabelle ^a   Laquerre, Joanie ^a   Fournier, Éric ^a   Gilbert, Isabelle ^a   Scantland, Sara ^a   Gagné, Dominic ^a   Blondin, Patrick ^a   Robert, Claude ^a  

^a UNIVERSITÉ LAVAL   (Canada)

^b L'Alliance Boviteq Inc   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

MESSENGER RNA; UNTRANSLATED RNA;

ANIMAL EXPERIMENT; ARTICLE; BLASTOCYST; COMPARATIVE STUDY; CONTROLLED STUDY; COW; EMBRYO; EMBRYO DEVELOPMENT; IN VITRO STUDY; IN VIVO STUDY; MICROARRAY ANALYSIS; MICROENVIRONMENT; NONHUMAN; OOCYTE MATURATION; PRIORITY JOURNAL; RNA TRANSCRIPTION;

ANIMALS; BLASTOCYST; CATTLE; CELLS, CULTURED; CULTURE MEDIA; DNA, INTERGENIC; ECTOGENESIS; EMBRYO CULTURE TECHNIQUES; EMBRYONIC DEVELOPMENT; FEMALE; FERTILIZATION IN VITRO; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, DEVELOPMENTAL; GENE REGULATORY NETWORKS; MALE; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; OOCYTES; OOGENESIS; RNA, MESSENGER; RNA, UNTRANSLATED;

BOS; BOVINAE;

EID: 79960457176     PISSN: 14701626     EISSN: 17417899     Source Type: Journal    
DOI: 10.1530/REP-10-0477     Document Type: Article

References (58)

1. Alm H, Torner H, Lohrke B, Viergutz T, Ghoneim IM & Kanitz W 2005 Bovine blastocyst development rate in vitro is influenced by selection of oocytes by brillant cresyl blue staining before IVM as indicator for glucose-6-phosphate dehydrogenase activity. Theriogenology 63 2194-2205. (doi:10.1016/j.theriogenology.2004.09.050)
2. Block J, Bonilla L & Hansen PJ 2009 Effect of addition of hyaluronan to embryo culture medium on survival of bovine embryos in vitro following vitrification and establishment of pregnancy after transfer to recipients. Theriogenology 71 1063-1071. (doi:10.1016/j.theriogenology.2008.11.007)
3. Bousquet D, Burnside EB & Van Doormaal BJ 1998 Biotechnologies of reproduction applied to dairy cattle production: embryo transfer and IVF. Canadian Journal of Animal Science 83 403-407. (doi:10.4141/A03-025)
4. Bousquet D, Twagiramungu H, Morin N, Brisson C, Carboneau G & Durocher J 1999 In vitro embryo production in the cow: an effective alternative to the conventional embryo production approach. Theriogenology 51 59-70. (doi:10.1016/S0093-691X(98)00231-3)
5. Bui LC, Evsikov AV, Khan DR, Archilla C, Peynot N, Henaut A, Le Bourhis D, Vignon X, Renard JP & Duranthon V 2009 Retrotransposon expression as a defining event of genome reprogramming in fertilized and cloned bovine embryos. Reproduction 138 289-299. (doi:10.1530/REP-09-0042)
6. Crosier AE, Farin PW, Dykstra MJ, Alexander JE & Farin CE 2000 Ultrastructural morphometry of bovine compact morulae produced in vivo or in vitro. Biology of Reproduction 62 1459-1465. (doi:10.1095/biolreprod62.5.1459)
7. Culhane AC, Perriere G, Considine EC, Cotter TG & Higgins DG 2002 Between-group analysis of microarray data. Bioinformatics 18 1600-1608. (doi:10.1093/bioinformatics/18.12.1600)
8. Culhane AC, Perriere G & Higgins DG 2003 Cross-platform comparison and visualisation of gene expression data using co-inertia analysis. BMC Bioinformatics 4 59. (doi:10.1186/1471-2105-4-59)
9. Durocher J, Morin N & Blondin P 2006 Effect of hormonal stimulation on bovine follicular response and oocyte developmental competence in a commercial operation. Theriogenology 65 102-115. (doi:10.1016/j.theriogenology. 2005.10.009)
10. Fischer-Brown A, Monson R, Parrish J & Rutledge J 2002 Cell allocation in bovine embryos cultured in two media under two oxygen concentrations. Zygote 10 341-348. (doi:10.1017/S0967199402004082)
11. Fujita T, Umeki H, Shimura H, Kugumiya K & Shiga K 2006 Effect of group culture and embryo-culture conditioned medium on development of bovine embryos. Journal of Reproduction and Development 52 137-142. (doi:10.1262/jrd.16084)
12. Gilbert I, Scantland S, Dufort I, Gordynska O, Labbe A, Sirard MA & Robert C 2009 Real-time monitoring of aRNA production during T7 amplification to prevent the loss of sample representation during microarray hybridization sample preparation. Nucleic Acids Research 37 e65. (doi:10.1093/nar/gkp193)
13. Gilbert I, Scantland S, Sylvestre EL, Dufort I, Sirard MA & Robert C 2010 Providing a stable methodological basis for comparing transcript abundance of developing embryos using microarrays. Molecular Human Reproduction 16 601-616. (doi:10.1093/molehr/gaq038)
14. Goossens K, Van Poucke M, Van Soom A, Vandesompele J, Van Zeveren A & Peelman LJ 2005 Selection of reference genes for quantitative real-time PCR in bovine preimplantation embryos. BMC Developmental Biology 5 27. (doi:10.1186/1471-213X-5-27)
15. Gutierrez-Adan A, Rizos D, Fair T, Moreira PN, Pintado B, de la Fuente J, Boland MP & Lonergan P 2004 Effect of speed of development on mRNA expression pattern in early bovine embryos cultured in vivo or in vitro. Molecular Reproduction and Development 68 441-448. (doi:10.1002/mrd.20113)
16. Guyader-Joly C, Ponchon S, Durand M, Heyman Y, Renard JP & Menezo Y 1999 Effect of lecithin on in vitro and in vivo survival of in vitro produced bovine blastocysts after cryopreservation. Theriogenology 52 1193-1202. (doi:10.1016/S0093-691X(99)00211-3)
17. Hochberg Y & Benjamini Y 1990 More powerful procedures for multiple significance testing. Statistics in Medicine 9 811-818. (doi:10.1002/sim. 4780090710)
18. Holm P, Booth PJ, Schmidt MH, Greve T & Callesen H 1999 High bovine blastocyst development in a static in vitro production system using SOFaa medium supplemented with sodium citrate and myo-inositol with or without serum-proteins. Theriogenology 52 683-700. (doi:10.1016/S0093-691X(99)00162-4)
19. Holm P, Booth PJ & Callesen H 2002 Kinetics of early in vitro development of bovine in vivo- and in vitro-derived zygotes produced and/or cultured in chemically defined or serum-containing media. Reproduction 123 553-565. (doi:10.1530/rep.0.1230553)
20. Kimura K, Spate LD, Green MP & Roberts RM 2005 Effects of D-glucose concentration, D-fructose, and inhibitors of enzymes of the pentose phosphate pathway on the development and sex ratio of bovine blastocysts. Molecular Reproduction and Development 72 201-207. (doi:10.1002/mrd.20342)
21. Kimura K, Iwata H & Thompson JG 2008 The effect of glucosamine concentration on the development and sex ratio of bovine embryos. Animal Reproduction Science 103 228-238. (doi:10.1016/j.anireprosci.2006.12.014)
22. Knijn HM, Wrenzycki C, Hendriksen PJ, Vos PL, Herrmann D, van der Weijden GC, Niemann H & Dieleman SJ 2002 Effects of oocyte maturation regimen on the relative abundance of gene transcripts in bovine blastocysts derived in vitro or in vivo. Reproduction 124 365-375. (doi:10.1530/rep.0.1240365)
23. Knijn HM, Wrenzycki C, Hendriksen PJ, Vos PL, Zeinstra EC, van der Weijden GC, Niemann H & Dieleman SJ 2005 In vitro and in vivo culture effects on mRNA expression of genes involved in metabolism and apoptosis in bovine embryos. Reproduction, Fertility, and Development 17 775-784. (doi:10.1071/RD05038)
24. Le Bouc Y, Rossignol S, Azzi S, Steunou V, Netchine I & Gicquel C 2010 Epigenetics, genomic imprinting and assisted reproductive technology. Annales d'Endocrinologie 71 237-238. (doi:10.1016/j.ando.2010.02.004)
25. Leese HJ 2002 Quiet please, do not disturb: a hypothesis of embryo metabolism and viability. Bioessays 24 845-849. (doi:10.1002/bies.10137)
26. Leese HJ, Sturmey RG, Baumann CG & McEvoy TG 2007 Embryo viability and metabolism: obeying the quiet rules. Human Reproduction 22 3047-3050. (doi:10.1093/humrep/dem253)
27. Leese HJ, Baumann CG, Brison DR, McEvoy TG & Sturmey RG 2008 Metabolism of the viable mammalian embryo: quietness revisited. Molecular Human Reproduction 14 667-672. (doi:10.1093/molehr/gan065)
28. Lonergan P, Rizos D, Gutierrez-Adan A, Fair T & Boland MP 2003 Effect of culture environment on embryo quality and gene expression - experience from animal studies. Reproductive Biomedicine Online 7 657-663. (doi:10.1016/S1472- 6483(10)62088-3)
29. Luciano AM, Pocar P, Milanesi E, Modina S, Rieger D, Lauria A & Gandolfi F 1999 Effect of different levels of intracellular cAMP on the in vitro maturation of cattle oocytes and their subsequent development following in vitro fertilization. Molecular Reproduction and Development 54 86-91. (doi:10.1002/(SICI)1098-2795(199909)54:1〈86::AID-MRD13〉3.0.CO;2-C)
30. McEvoy TG, Sinclair KD, Young LE, Wilmut I & Robinson JJ 2000 Large offspring syndrome and other consequences of ruminant embryo culture in vitro: relevance to blastocyst culture in human ART. Human Fertility 3 238-246. (doi:10.1080/1464727002000199061)
31. McHughes CE, Springer GK, Spate LD, Li R, Woods R, Green MP, Korte SW, Murphy CN, Green JA & Prather RS 2009 Identification and quantification of differentially represented transcripts in in vitro and in vivo derived preimplantation bovine embryos. Molecular Reproduction and Development 76 48-60. (doi:10.1002/mrd.20929)
32. Menck MC, Guyader-Joly C, Peynot N, Le Bourhis D, Lobo RB, Renard JP & Heyman Y 1997 Beneficial effects of Vero cells for developing IVF bovine eggs in two different coculture systems. Reproduction, Nutrition, Development 37 141-150. (doi:10.1051/rnd:19970202)
33. Mohan M, Hurst AG & Malayer JR 2004 Global gene expression analysis comparing bovine blastocysts flushed on day 7 or produced in vitro. Molecular Reproduction and Development 68 288-298. (doi:10.1002/mrd.20086)
34. de Moraes AA & Hansen PJ 1997 Granulocyte-macrophage colony-stimulating factor promotes development of in vitro produced bovine embryos. Biology of Reproduction 57 1060-1065. (doi:10.1095/biolreprod57.5.1060)
35. Niemann H & Wrenzycki C 2000 Alterations of expression of developmentally important genes in preimplantation bovine embryos by in vitro culture conditions: implications for subsequent development. Theriogenology 53 21-34. (doi:10.1016/S0093-691X(99)00237-X)
36. Pereira MM, Machado MA, Costa FQ, Serapiao RV, Viana JH & Camargo LS 2010 Effect of oxygen tension and serum during IVM on developmental competence of bovine oocytes. Reproduction, Fertility, and Development 22 1074-1082. (doi:10.1071/RD10007)
37. Purpera MN, Giraldo AM, Ballard CB, Hylan D, Godke RA & Bondioli KR 2009 Effects of culture medium and protein supplementation on mRNA expression of in vitro produced bovine embryos. Molecular Reproduction and Development 76 783-793. (doi:10.1002/mrd.21028)
38. Rizos D, Gutierrez-Adan A, Perez-Garnelo S, De La Fuente J, Boland MP & Lonergan P 2003 Bovine embryo culture in the presence or absence of serum: implications for blastocyst development, cryotolerance, and messenger RNA expression. Biology of Reproduction 68 236-243. (doi:10.1095/biolreprod.102. 007799)
39. Rizos D, Clemente M, Bermejo-Alvarez P, de La Fuente J, Lonergan P & Gutierrez-Adan A 2008 Consequences of in vitro culture conditions on embryo development and quality. Reproduction in Domestic Animals 43 (Suppl 4) 44-50. (doi:10.1111/j.1439-0531.2008.01230.x)
40. Robert C 2010 Microarray analysis of gene expression during early development: a cautionary overview. Reproduction 140 787-801. (doi:10.1530/REP-10-0191)
41. Robert C, Barnes FL, Hue I & Sirard MA 2000 Subtractive hybridization used to identify mRNA associated with the maturation of bovine oocytes. Molecular Reproduction and Development 57 167-175. (doi:10.1002/1098- 2795(200010)57:2〈167::AID-MRD8〉3.0.CO;2-P)
42. Rougeulle C & Avner P 2004 The role of antisense transcription in the regulation of X-inactivation. Current Topics in Developmental Biology 63 61-89. (doi:10.1016/S0070-2153(04)63003-1)
43. Santos F, Hyslop L, Stojkovic P, Leary C, Murdoch A, Reik W, Stojkovic M, Herbert M & Dean W 2010 Evaluation of epigenetic marks in human embryos derived from IVF and ICSI. Human Reproduction 25 2387-2395. (doi:10.1093/humrep/ deq151)
44. Seli E, Robert C & Sirard MA 2010 OMICS in assisted reproduction: possibilities and pitfalls. Molecular Human Reproduction 16 513-530. (doi:10.1093/molehr/gaq041)
45. Senner CE & Brockdorff N 2009 Xist gene regulation at the onset of X inactivation. Current Opinion in Genetics & Development 19 122-126. (doi:10.1016/j.gde.2009.03.003)
46. Smyth GK 2004 Linear models and empirical bayes methods for assessing differential expression in microarray experiments. Statistical Applications in Genetics and Molecular Biology 3 Article3. (doi:10.2202/1544-6115.1027)
47. Smyth GK, Michaud J & Scott HS 2005 Use of within-array replicate spots for assessing differential expression in microarray experiments. Bioinformatics 21 2067-2075. (doi:10.1093/bioinformatics/bti270)
48. Stojkovic M, Kolle S, Peinl S, Stojkovic P, Zakhartchenko V, Thompson JG, Wenigerkind H, Reichenbach HD, Sinowatz F & Wolf E 2002 Effects of high concentrations of hyaluronan in culture medium on development and survival rates of fresh and frozen-thawed bovine embryos produced in vitro. Reproduction 124 141-153. (doi:10.1530/rep.0.1240141)
49. Taverne MA, Breukelman SP, Perenyi Z, Dieleman SJ, Vosa PL, Jonker HH, de Ruigh L, Van Wagtendonk-de Leeuw JM & Beckers JF 2002 The monitoring of bovine pregnancies derived from transfer of in vitro produced embryos. Reproduction, Nutrition, Development 42 613-624. (doi:10.1051/rnd:2002047)
50. Vallee M, Dufort I, Desrosiers S, Labbe A, Gravel C, Gilbert I, Robert C & Sirard MA 2009 Revealing the bovine embryo transcript profiles during early in vivo embryonic development. Reproduction 138 95-105. (doi:10.1530/REP-08-0533)
51. Vandesompele J, De Preter K, Pattyn F, Poppe B, Van Roy N, De Paepe A & Speleman F 2002 Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes. Genome Biology 3 RESEARCH0034. (doi:10.1186/gb-2002-3-7-research0034)
52. Vigneault C, Gravel C, Vallee M, McGraw S & Sirard MA 2009 Unveiling the bovine embryo transcriptome during the maternal-to-embryonic transition. Reproduction 137 245-257. (doi:10.1530/REP-08-0079)
53. van Wagtendonk-de Leeuw AM, Mullaart E, de Roos AP, Merton JS, den Daas JH, Kemp B & de Ruigh L 2000 Effects of different reproduction techniques: AI MOET or IVP, on health and welfare of bovine offspring. Theriogenology 53 575-597. (doi:10.1016/S0093-691X(99) 00259-9)
54. Wang Y, McClelland M & Xia XQ 2009 Analyzing microarray data using WebArray. Cold Spring Harbor Protocols 2009 pdb.prot5260. (doi:10.1101/pdb. prot5260)
55. Wrenzycki C, Herrmann D, Carnwath JW & Niemann H 1998 Expression of RNA from developmentally important genes in preimplantation bovine embryos produced in TCM supplemented with BSA. Journal of Reproduction and Fertility 112 387-398. (doi:10.1530/jrf.0.1120387)
56. Wrenzycki C, Herrmann D, Keskintepe L, Martins A Jr, Sirisathien S, Brackett B & Niemann H 2001 Effects of culture system and protein supplementation on mRNA expression in pre-implantation bovine embryos. Human Reproduction 16 893-901. (doi:10.1093/humrep/16.5.893)
57. Xia X, McClelland M & Wang Y 2005 WebArray: an online platform for microarray data analysis. BMC Bioinformatics 6 306. (doi:10.1186/1471-2105-6- 306)
58. Young LE, Sinclair KD & Wilmut I 1998 Large offspring syndrome in cattle and sheep. Reviews of Reproduction 3 155-163. (doi:10.1530/ror.0.0030155)