-
2
-
-
34848907958
-
New insights into the formation of HIV-1 reverse transcription initiation complex
-
DOI 10.1016/j.biochi.2007.01.016, PII S0300908407000284, Functional diversity of DNA
-
Barraud P.; Gaudin C.; Dardel F.; and Tisne C. New insights into the formation of HIV-1 reverse transcription initiation complex Biochimie 89 2007 1204 1210 (Pubitemid 47498681)
-
(2007)
Biochimie
, vol.89
, Issue.10
, pp. 1204-1210
-
-
Barraud, P.1
Gaudin, C.2
Dardel, F.3
Tisne, C.4
-
3
-
-
0025635705
-
Retroviral recombination and reverse transcription
-
Hu W.-S.; and Temin H.M Retroviral recombination and reverse transcription Science 250 1990 1227 1233 (Pubitemid 120031830)
-
(1990)
Science
, vol.250
, Issue.4985
, pp. 1227-1233
-
-
Hu, W.-S.1
Temin, H.M.2
-
4
-
-
0030812830
-
Primer tRNAS for reverse transcription
-
Mak J.; and Kleiman L Primer tRNAs for reverse transcription J. Virol. 71 1997 8087 8095 (Pubitemid 27446382)
-
(1997)
Journal of Virology
, vol.71
, Issue.11
, pp. 8087-8095
-
-
Mak, J.1
Kleiman, L.2
-
5
-
-
0033911631
-
Interactions between human immunodeficiency virus type 1 reverse transcriptase, tRNA primer, and nucleocapsid protein during reverse transcription
-
Hsu M.; and Wainberg M.A Interactions between human immunodeficiency virus type 1 reverse transcriptase, tRNA primer, and nucleocapsid protein during reverse transcription J. Hum. Virol. 3 2000 16 26 (Pubitemid 30470377)
-
(2000)
Journal of Human Virology
, vol.3
, Issue.1
, pp. 16-26
-
-
Hsu, M.1
Wainberg, M.A.2
-
6
-
-
0027331556
-
3 modulate primer/template loop-loop interaction in the initiation complex of HIV-1 reverse transcription
-
3 modulate primer/template loop-loop interaction in the initiation complex of HIV-1 reverse transcription J. Biol. Chem. 268 1993 25269 25272
-
(1993)
J. Biol. Chem.
, vol.268
, pp. 25269-25272
-
-
Isel, C.1
Marquet, R.2
Keith, G.3
Ehresmann, C.4
Ehresmann, B.5
-
9
-
-
0029016258
-
Nascent human immunodeficiency virus type 1 reverse transcription occurs within an enveloped particle
-
Zhang H.; Zhang Y.; Spicer T.; Henrard D.; and Poiesz B.J. Nascent human immunodeficiency virus type 1 reverse transcription occurs within an enveloped particle J. Virol. 69 1995 3675 3682
-
(1995)
J. Virol.
, vol.69
, pp. 3675-3682
-
-
Zhang, H.1
Zhang, Y.2
Spicer, T.3
Henrard, D.4
Poiesz, B.J.5
-
11
-
-
63049116293
-
When is it time for reverse transcription to start and go?
-
Mougel M.; Houzet L.; and Darlix J.L. When is it time for reverse transcription to start and go? Retrovirology 6 2009 24
-
(2009)
Retrovirology
, vol.6
, pp. 24
-
-
Mougel, M.1
Houzet, L.2
Darlix, J.L.3
-
12
-
-
0028097831
-
Minimal sequence requirements of a functional human immunodeficiency virus type 1 primer binding site
-
Wakefield J.K.; Rhim H.; and Morrow C.D. Minimal sequence requirements of a functional human immunodeficiency virus type 1 primer binding site J. Virol. 68 1994 1605 1614 (Pubitemid 24065726)
-
(1994)
Journal of Virology
, vol.68
, Issue.3
, pp. 1605-1614
-
-
Wakefield, J.K.1
Rhim, H.2
Morrow, C.D.3
-
14
-
-
0030586782
-
Mutations in both the U5 region and the primer-binding site influence the selection of the tRNA used for the initiation of HIV-1 reverse transcription
-
DOI 10.1006/viro.1996.0437
-
Kang S.M.; Wakefield J.K.; and Morrow C.D. Mutations in both the U5 region and the primer-binding site influence the selection of the tRNA used for the initiation of HIV-1 reverse transcription Virology 222 1996 401 414 (Pubitemid 26279185)
-
(1996)
Virology
, vol.222
, Issue.2
, pp. 401-414
-
-
Kang, S.-M.1
Wakefield, J.K.2
Morrow, C.D.3
-
16
-
-
0030013267
-
Mutations within the primer binding site of the human immunodeficiency virus type 1 define sequence requirements essential for reverse transcription
-
DOI 10.1006/viro.1996.0317
-
Wakefield J.K.; and Morrow C.D. Mutations within the primer binding site of the human immunodeficiency virus type 1 define sequence requirements essential for reverse transcription Virology 220 1996 290 298 (Pubitemid 26201687)
-
(1996)
Virology
, vol.220
, Issue.2
, pp. 290-298
-
-
Wakefield, J.K.1
Morrow, C.D.2
-
17
-
-
0030019943
-
Specific initiation and switch to elongation of human immunodeficiency virus type 1 reverse transcription require the post-transcriptional modifications of primer tRNA3Lys
-
Isel C.; Lanchy J.M.; Le Grice S.F.; Ehresmann C.; Ehresmann B.; and Marquet R. Specific initiation and switch to elongation of human immunodeficiency virus type 1 reverse transcription require the post-transcriptional modifications of primer tRNA3Lys EMBO J. 15 1996 917 924
-
(1996)
EMBO J.
, vol.15
, pp. 917-924
-
-
Isel, C.1
Lanchy, J.M.2
Le Grice, S.F.3
Ehresmann, C.4
Ehresmann, B.5
Marquet, R.6
-
18
-
-
0032516864
-
Mechanistic studies of early pausing events during initiation of HIV-1 reverse transcription
-
DOI 10.1074/jbc.273.33.21309
-
Liang C.; Rong L.; Gotte M.; Li X.; Quan Y.; Kleiman L.; and Wainberg M.A. Mechanistic studies of early pausing events during initiation of HIV-1 reverse transcription J. Biol. Chem. 273 1998 21309 21315 (Pubitemid 28385424)
-
(1998)
Journal of Biological Chemistry
, vol.273
, Issue.33
, pp. 21309-21315
-
-
Liang, C.1
Rong, L.2
Gotte, M.3
Li, X.4
Quan, Y.5
Kleiman, L.6
Wainberg, M.A.7
-
19
-
-
0032516864
-
Mechanistic studies of early pausing events during initiation of HIV-1 reverse transcription
-
DOI 10.1074/jbc.273.33.21309
-
Liang C.; Rong L.; Gotte M.; Li X.; Quan Y.; Kleiman L.; and Wainberg M.A. Mechanistic studies of early pausing events during initiation of HIV-1 reverse transcription J. Biol. Chem. 273 1998 21309 21315 (Pubitemid 28385424)
-
(1998)
Journal of Biological Chemistry
, vol.273
, Issue.33
, pp. 21309-21315
-
-
Liang, C.1
Rong, L.2
Gotte, M.3
Li, X.4
Quan, Y.5
Kleiman, L.6
Wainberg, M.A.7
-
20
-
-
0037044823
-
Direct and indirect contributions of RNA secondary structure elements to the initiation of HIV-1 reverse transcription
-
DOI 10.1074/jbc.M205295200
-
Goldschmidt V.; Rigourd M.; Ehresmann C.; Le Grice S.F.; Ehresmann B.; and Marquet R. Direct and indirect contributions of RNA secondary structure elements to the initiation of HIV-1 reverse transcription J. Biol. Chem. 277 2002 43233 43242 (Pubitemid 35285709)
-
(2002)
Journal of Biological Chemistry
, vol.277
, Issue.45
, pp. 43233-43242
-
-
Goldschmidt, V.1
Rigourd, M.2
Ehresmann, C.3
Le Grice, S.F.J.4
Ehresmann, B.5
Marquet, R.6
-
22
-
-
4143097199
-
Structural variability of the initiation complex of HIV-1 reverse transcription
-
DOI 10.1074/jbc.M404473200
-
Goldschmidt V.; Paillart J.C.; Rigourd M.; Ehresmann B.; Aubertin A.M.; Ehresmann C.; and Marquet R. Structural variability of the initiation complex of HIV-1 reverse transcription J. Biol. Chem. 279 2004 35923 35931 (Pubitemid 39100599)
-
(2004)
Journal of Biological Chemistry
, vol.279
, Issue.34
, pp. 35923-35931
-
-
Goldschmidt, V.1
Paillart, J.-C.2
Rigourd, M.3
Ehresmann, B.4
Aubertin, A.-M.5
Ehresmann, C.6
Marquet, R.7
-
23
-
-
0033558050
-
Structural basis for the specificity of the initiation of HIV-1 reverse transcription
-
DOI 10.1093/emboj/18.4.1038
-
Isel C.; Westhof E.; Massire C.; Le Grice S.F.; Ehresmann B.; Ehresmann C.; and Marquet R. Structural basis for the specificity of the initiation of HIV-1 reverse transcription EMBO J. 18 1999 1038 1048 (Pubitemid 29082282)
-
(1999)
EMBO Journal
, vol.18
, Issue.4
, pp. 1038-1048
-
-
Isel, C.1
Westhof, E.2
Massire, C.3
Le Grice, S.F.J.4
Ehresmann, B.5
Ehresmann, C.6
Marquet, R.7
-
27
-
-
16244371290
-
Structure determination of large biological RNAs
-
DOI 10.1016/S0076-6879(05)94016-0, Nuclear Magnetic Resonance of Biological Macromolecules
-
Lukavsky P.J.; and Puglisi J.D. Structure determination of large biological RNAs Methods Enzymol. 394 2005 399 416 (Pubitemid 40460925)
-
(2005)
Methods in Enzymology
, vol.394
, pp. 399-416
-
-
Lukavsky, P.J.1
Puglisi, J.D.2
-
28
-
-
22444437410
-
RNA helical packing in solution: NMR structure of a 30 kDa GAAA tetraloop-receptor complex
-
DOI 10.1016/j.jmb.2005.05.069, PII S0022283605006479
-
Davis J.H.; Tonelli M.; Scott L.G.; Jaeger L.; Williamson J.R.; and Butcher S.E. RNA helical packing in solution: NMR structure of a 30 kDa GAAA tetraloop-receptor complex J. Mol. Biol. 351 2005 371 382 (Pubitemid 41007755)
-
(2005)
Journal of Molecular Biology
, vol.351
, Issue.2
, pp. 371-382
-
-
Davis, J.H.1
Tonelli, M.2
Scott, L.G.3
Jaeger, L.4
Williamson, J.R.5
Butcher, S.E.6
-
30
-
-
77149144527
-
Isotope labeling strategies for NMR studies of RNA
-
Lu K.; Miyazaki Y.; and Summers M.F. Isotope labeling strategies for NMR studies of RNA J. Biomol. NMR 46 2010 113 125
-
(2010)
J. Biomol. NMR
, vol.46
, pp. 113-125
-
-
Lu, K.1
Miyazaki, Y.2
Summers, M.F.3
-
32
-
-
4944256277
-
Structural basis for packaging the dimeric genome of Moloney murine leukaemia virus
-
DOI 10.1038/nature02944
-
D'Souza V.; and Summers M.F Structural basis for packaging the dimeric genome of Moloney murine leukaemia virus Nature 431 2004 586 590 (Pubitemid 39336341)
-
(2004)
Nature
, vol.431
, Issue.7008
, pp. 586-590
-
-
D'Souza, V.1
Summers, M.F.2
-
33
-
-
1442286437
-
NMR structure of the 101-nucleotide core encapsidation signal of the moloney murine leukemia virus
-
DOI 10.1016/j.jmb.2004.01.037, PII S0022283604000932
-
D'Souza V.; Dey A.; Habib D.; and Summers M.F. NMR structure of the 101-nucleotide core encapsidation signal of the Moloney murine leukemia virus J. Mol. Biol. 337 2004 427 442 (Pubitemid 38293409)
-
(2004)
Journal of Molecular Biology
, vol.337
, Issue.2
, pp. 427-442
-
-
D'Souza, V.1
Dey, A.2
Habib, D.3
Summers, M.F.4
-
35
-
-
35648952742
-
Lys in solution by NMR
-
DOI 10.1016/j.febslet.2007.10.026, PII S0014579307010861
-
Puglisi E.V.; and Puglisi J.D. Probing the conformation of human tRNA(3)(Lys) in solution by NMR FEBS Lett. 581 2007 5307 5314 (Pubitemid 350019605)
-
(2007)
FEBS Letters
, vol.581
, Issue.27
, pp. 5307-5314
-
-
Puglisi, E.V.1
Puglisi, J.D.2
-
36
-
-
48749083055
-
NMR-assisted prediction of RNA secondary structure: Identification of a probable pseudoknot in the coding region of an R2 retrotransposon
-
Hart J.M.; Kennedy S.D.; Mathews D.H.; and Turner D.H. NMR-assisted prediction of RNA secondary structure: identification of a probable pseudoknot in the coding region of an R2 retrotransposon J. Am. Chem. Soc. 130 2008 10233 10239
-
(2008)
J. Am. Chem. Soc.
, vol.130
, pp. 10233-10239
-
-
Hart, J.M.1
Kennedy, S.D.2
Mathews, D.H.3
Turner, D.H.4
-
37
-
-
0027479628
-
Functional sites in the 5' region of human immunodeficiency virus type 1 RNA form defined structural domains
-
DOI 10.1006/jmbi.1993.1041
-
Baudin F.; Marquet R.; Isel C.; Darlix J.L.; Ehresmann B.; and Ehresmann C. Functional sites in the 5′ region of human immunodeficiency virus type 1 RNA form defined structural domains J. Mol. Biol. 229 1993 382 397 (Pubitemid 23080387)
-
(1993)
Journal of Molecular Biology
, vol.229
, Issue.2
, pp. 382-397
-
-
Baudin, F.1
Marquet, R.2
Isel, C.3
Carlix, J.-L.4
Ehresmann, B.5
Ehresmann, C.6
-
38
-
-
0031761536
-
HIV-1 A-rich RNA loop mimics the tRNA anticodon structure
-
DOI 10.1038/4141
-
Puglisi E.V.; and Puglisi J.D. HIV-1 A-rich RNA loop mimics the tRNA anticodon structure Nat. Struct. Biol. 5 1998 1033 1036 (Pubitemid 28546264)
-
(1998)
Nature Structural Biology
, vol.5
, Issue.12
, pp. 1033-1036
-
-
Puglisi, E.V.1
Puglisi, J.D.2
-
39
-
-
0030598921
-
3(Lys) hybrids
-
DOI 10.1006/jmbi.1996.0463
-
Lys hybrids J. Mol. Biol. 261 1996 315 321 (Pubitemid 26335887)
-
(1996)
Journal of Molecular Biology
, vol.261
, Issue.3
, pp. 315-321
-
-
Yusupova, G.1
Lanchy, J.-M.2
Yusupov, M.3
Keith, G.4
Le Grice, S.F.J.5
Ehresmann, C.6
Ehresmann, B.7
Marquet, R.8
-
40
-
-
0022470564
-
Rapid chemical probing of conformation in 16 S ribosomal RNA and 30 S ribosomal subunits using primer extension
-
Moazed D.; Stern S.; and Noller H.F. Rapid chemical probing of conformation in 16 S ribosomal RNA and 30 S ribosomal subunits using primer extension J. Mol. Biol. 187 1986 399 416 (Pubitemid 16083780)
-
(1986)
Journal of Molecular Biology
, vol.187
, Issue.3
, pp. 399-416
-
-
Moazed, D.1
Stern, S.2
Noller, H.F.3
-
41
-
-
0035720187
-
RNAPack: An integrated NMR approach to RNA structure determination
-
DOI 10.1006/meth.2001.1244
-
Lukavsky P.J.; and Puglisi J.D. RNAPack: an integrated NMR approach to RNA structure determination Methods 25 2001 316 332 (Pubitemid 34183556)
-
(2001)
Methods
, vol.25
, Issue.3
, pp. 316-332
-
-
Lukavsky, P.J.1
Puglisi, J.D.2
-
43
-
-
34547916462
-
Probing nucleation, reverse annealing, and chaperone function along the reaction path of HIV-1 single-strand transfer
-
DOI 10.1073/pnas.0700350104
-
Zeng Y.; Liu H.W.; Landes C.F.; Kim Y.J.; Ma X.; and Zhu Y. Probing nucleation, reverse annealing, and chaperone function along the reaction path of HIV-1 single-strand transfer Proc. Natl Acad. Sci. USA 104 2007 12651 12656 (Pubitemid 47255209)
-
(2007)
Proceedings of the National Academy of Sciences of the United States of America
, vol.104
, Issue.31
, pp. 12651-12656
-
-
Zeng, Y.1
Liu, H.-W.2
Landes, C.F.3
Yoen, J.K.4
Ma, X.5
Zhu, Y.6
Musier-Forsyth, K.7
Barbara, P.F.8
-
45
-
-
78649866357
-
Initiation complex dynamics direct the transitions between distinct phases of early HIV reverse transcription
-
Liu S.; Harada B.T.; Miller J.T.; Le Grice S.F.; and Zhuang X. Initiation complex dynamics direct the transitions between distinct phases of early HIV reverse transcription Nat. Struct. Mol. Biol. 17 2010 1453 1460
-
(2010)
Nat. Struct. Mol. Biol.
, vol.17
, pp. 1453-1460
-
-
Liu, S.1
Harada, B.T.2
Miller, J.T.3
Le Grice, S.F.4
Zhuang, X.5
-
46
-
-
0032573488
-
Structure of a covalently trapped catalytic complex of HIV-1 reverse transcriptase: Implications for drug resistance
-
Huang H.; Chopra R.; Verdine G.L.; and Harrison S.C. Structure of a covalently trapped catalytic complex of HIV-1 reverse transcriptase: implications for drug resistance Science 282 1998 1669 1675 (Pubitemid 28549275)
-
(1998)
Science
, vol.282
, Issue.5394
, pp. 1669-1675
-
-
Huang, H.1
Chopra, R.2
Verdine, G.L.3
Harrison, S.C.4
-
47
-
-
1942501609
-
Large-scale preparation and purification of polyacrylamide-free RNA oligonucleotides
-
DOI 10.1261/rna.5264804
-
Lukavsky P.J.; and Puglisi J.D. Large-scale preparation and purification of polyacrylamide-free RNA oligonucleotides RNA 10 2004 889 893 (Pubitemid 38529751)
-
(2004)
RNA
, vol.10
, Issue.5
, pp. 889-893
-
-
Lukavsky, P.J.1
Puglisi, J.D.2
-
49
-
-
33846446409
-
Rapid purification of RNAs using fast performance liquid chromatography (FPLC)
-
DOI 10.1261/rna.342607
-
Kim I.; McKenna S.A.; Viani Puglisi E.; and Puglisi J.D. Rapid purification of RNAs using fast performance liquid chromatography (FPLC) RNA 13 2007 289 294 (Pubitemid 46147903)
-
(2007)
RNA
, vol.13
, Issue.2
, pp. 289-294
-
-
Kim, I.1
Mckenna, S.A.2
Puglisi, E.V.3
Puglisi, J.D.4
-
50
-
-
0028820398
-
Biochemical and NMR studies of RNA conformation with an emphasis on RNA pseudoknots
-
Puglisi J.D.; and Wyatt J.R. Biochemical and NMR studies of RNA conformation with an emphasis on RNA pseudoknots Methods Enzymol. 261 1995 323 350
-
(1995)
Methods Enzymol.
, vol.261
, pp. 323-350
-
-
Puglisi, J.D.1
Wyatt, J.R.2
-
51
-
-
0026744912
-
Preparation of isotopically labeled ribonucleotides for multidimensional NMR spectroscopy of RNA
-
Batey R.T.; Inada M.; Kujawinski E.; Puglisi J.D.; and Williamson J.R. Preparation of isotopically labeled ribonucleotides for multidimensional NMR spectroscopy of RNA Nucleic Acids Res. 20 1992 4515 4523
-
(1992)
Nucleic Acids Res.
, vol.20
, pp. 4515-4523
-
-
Batey, R.T.1
Inada, M.2
Kujawinski, E.3
Puglisi, J.D.4
Williamson, J.R.5
-
52
-
-
0028803380
-
Preparation of isotopically enriched RNAs for heteronuclear NMR
-
Batey R.T.; Battiste J.L.; and Williamson J.R. Preparation of isotopically enriched RNAs for heteronuclear NMR Methods Enzymol. 261 1995 300 323
-
(1995)
Methods Enzymol.
, vol.261
, pp. 300-323
-
-
Batey, R.T.1
Battiste, J.L.2
Williamson, J.R.3
-
53
-
-
0033673387
-
Structures of two RNA domains essential for hepatitis C virus internal ribosome entry site function
-
Lukavsky P.J.; Otto G.A.; Lancaster A.M.; Sarnow P.; and Puglisi J.D. Structures of two RNA domains essential for hepatitis C virus internal ribosome entry site function Nat. Struct. Biol. 7 2000 1105 1110
-
(2000)
Nat. Struct. Biol.
, vol.7
, pp. 1105-1110
-
-
Lukavsky, P.J.1
Otto, G.A.2
Lancaster, A.M.3
Sarnow, P.4
Puglisi, J.D.5
-
54
-
-
0004040543
-
-
University of California San Francisco, CA
-
Goddard T.G.; and Kneller D.G. Sparky 3 2007 University of California San Francisco, CA
-
(2007)
Sparky 3
-
-
Goddard, T.G.1
Kneller, D.G.2
-
55
-
-
12044251259
-
Solvent suppression with symmetrically-shifted pulses
-
Smallcombe S. Solvent suppression with symmetrically-shifted pulses J. Am. Chem. Soc. 115 1993 4776 4785
-
(1993)
J. Am. Chem. Soc.
, vol.115
, pp. 4776-4785
-
-
Smallcombe, S.1
|