메뉴 건너뛰기




Volumn 39, Issue 12, 2011, Pages

Transcriptional regulation via TF-modifying enzymes: An integrative model-based analysis

Author keywords

[No Author keywords available]

Indexed keywords

I KAPPA B KINASE; IMMUNOGLOBULIN ENHANCER BINDING PROTEIN; JANUS KINASE 1; NON RECEPTOR PROTEIN TYROSINE PHOSPHATASE 2; STAT1 PROTEIN; TRANSCRIPTION FACTOR;

EID: 79960272278     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkr172     Document Type: Review
Times cited : (6)

References (80)
  • 1
    • 0030960672 scopus 로고    scopus 로고
    • Transcriptional activation by recruitment
    • DOI 10.1038/386569a0
    • Ptashne, M. and Gann, A. (1997) Transcriptional activation by recruitment. Nature, 386, 569-577. (Pubitemid 27175417)
    • (1997) Nature , vol.386 , Issue.6625 , pp. 569-577
    • Ptashne, M.1    Gann, A.2
  • 2
    • 0842265974 scopus 로고    scopus 로고
    • Regulation of RNA polymerase II transcription by sequence-specific DNA binding factors
    • DOI 10.1016/S0092-8674(03)01078-X
    • Kadonaga, J.T. (2004) Regulation of RNA polymerase II transcription by sequence-specific DNA binding factors. Cell, 116, 247-257. (Pubitemid 38173000)
    • (2004) Cell , vol.116 , Issue.2 , pp. 247-257
    • Kadonaga, J.T.1
  • 3
    • 44349109637 scopus 로고    scopus 로고
    • Eukaryotic transcription factor binding sites - Modeling and integrative search methods
    • DOI 10.1093/bioinformatics/btn198
    • Hannenhalli, S. (2008) Eukaryotic transcription factor binding sites-modeling and integrative search methods. Bioinformatics, 24, 1325-1331. (Pubitemid 351737136)
    • (2008) Bioinformatics , vol.24 , Issue.11 , pp. 1325-1331
    • Hannenhalli, S.1
  • 4
    • 22344449669 scopus 로고    scopus 로고
    • Constructing transcriptional regulatory networks
    • DOI 10.1101/gad.1325605
    • Blais, A. and Dynlacht, B.D. (2005) Constructing transcriptional regulatory networks. Genes Dev., 19, 1499-1511. (Pubitemid 41002994)
    • (2005) Genes and Development , vol.19 , Issue.13 , pp. 1499-1511
    • Blais, A.1    Dynlacht, B.D.2
  • 5
    • 67749113808 scopus 로고    scopus 로고
    • Transcriptional regulatory circuits: Predicting numbers from alphabets
    • Kim, H.D., Shay, T., O'Shea, E.K. and Regev, A. (2009) Transcriptional regulatory circuits: predicting numbers from alphabets. Science, 325, 429-432.
    • (2009) Science , vol.325 , pp. 429-432
    • Kim, H.D.1    Shay, T.2    O'Shea, E.K.3    Regev, A.4
  • 6
    • 0024432860 scopus 로고
    • Regulation of eukaryotic transcription factors by post-translational modification
    • DOI 10.1016/0167-4781(89)90087-0
    • Berk, A.J. (1989) Regulation of eukaryotic transcription factors by post-translational modification. Biochim. Biophys. Acta, 1009, 103-109. (Pubitemid 19254084)
    • (1989) Biochimica et Biophysica Acta - Gene Structure and Expression , vol.1009 , Issue.2 , pp. 103-109
    • Berk, A.J.1
  • 7
    • 0036469065 scopus 로고    scopus 로고
    • Transcription: Signal transduction and the control of gene expression
    • DOI 10.1126/science.1066355
    • Brivanlou, A.H. and Darnell, J.E. (2002) Signal transduction and the control of gene expression. Science, 295, 813-818. (Pubitemid 34118354)
    • (2002) Science , vol.295 , Issue.5556 , pp. 813-818
    • Brivanlou, A.H.1    Darnell Jr., J.E.2
  • 8
    • 1642543836 scopus 로고    scopus 로고
    • A 'molecular switchboard'-covalent modifications to proteins and their impact on transcription
    • Khidekel, N. and Hsieh-Wilson, L.C. (2004) A 'molecular switchboard'-covalent modifications to proteins and their impact on transcription. Org. Biomol. Chem., 2, 1-7.
    • (2004) Org. Biomol. Chem , vol.2 , pp. 1-7
    • Khidekel, N.1    Hsieh-Wilson, L.C.2
  • 9
    • 58149200951 scopus 로고    scopus 로고
    • PTM-Switchboard - A database of posttranslational modifications of transcription factors, the mediating enzymes and target genes
    • (Database issue)
    • Everett, L., Vo, A. and Hannenhalli, S. (2009) PTM-Switchboard - a database of posttranslational modifications of transcription factors, the mediating enzymes and target genes. Nucleic Acids Res., 37(Database issue), D66-D71.
    • (2009) Nucleic Acids Res , vol.37
    • Everett, L.1    Vo, A.2    Hannenhalli, S.3
  • 10
    • 79952108539 scopus 로고    scopus 로고
    • Regulating the regulators: Modulators of transcription factor activity
    • Everett, L., Hansen, M. and Hannenhalli, S. (2010) Regulating the regulators: modulators of transcription factor activity. Methods Mol. Biol., 674, 297-312.
    • (2010) Methods Mol. Biol. , vol.674 , pp. 297-312
    • Everett, L.1    Hansen, M.2    Hannenhalli, S.3
  • 11
    • 0036901003 scopus 로고    scopus 로고
    • Multisite phosphorylation provides sophisticated regulation of transcription factors
    • DOI 10.1016/S0968-0004(02)02207-7, PII S0968000402022077
    • Holmberg, C.I., Tran, S.E.F., Eriksson, J.E. and Sistonen, L. (2002) Multisite phosphorylation provides sophisticated regulation of transcription factors. Trends Biochem. Sci., 27, 619-627. (Pubitemid 35435311)
    • (2002) Trends in Biochemical Sciences , vol.27 , Issue.12 , pp. 619-627
    • Holmberg, C.I.1    Tran, S.E.F.2    Eriksson, J.E.3    Sistonen, L.4
  • 12
    • 0037428081 scopus 로고    scopus 로고
    • Regulating the regulators: Lysine modifications make their mark
    • DOI 10.1016/S0092-8674(02)01278-3
    • Freiman, R.N. and Tjian, R. (2003) Regulating the regulators: lysine modifications make their mark. Cell, 112, 11-17. (Pubitemid 36106414)
    • (2003) Cell , vol.112 , Issue.1 , pp. 11-17
    • Freiman, R.N.1    Tjian, R.2
  • 13
  • 14
    • 17044392996 scopus 로고    scopus 로고
    • Role of protein methylation in regulation of transcription
    • Lee, D.Y., Teyssier, C., Strahl, B.D. and Stallcup, M.R. (2005) Role of protein methylation in regulation of transcription. Endocr. Rev., 26, 147-170.
    • (2005) Endocr. Rev , vol.26 , pp. 147-170
    • Lee, D.Y.1    Teyssier, C.2    Strahl, B.D.3    Stallcup, M.R.4
  • 15
    • 67849103666 scopus 로고    scopus 로고
    • Protein microarrays
    • Fasolo, J. and Snyder, M. (2009) Protein microarrays. Methods Mol. Biol., 548, 209-222.
    • (2009) Methods Mol. Biol , vol.548 , pp. 209-222
    • Fasolo, J.1    Snyder, M.2
  • 16
    • 34250638276 scopus 로고    scopus 로고
    • Determining protein kinase substrate specificity by parallel solution-phase assay of large numbers of peptide substrates
    • Turk, B.E., Hutti, J.E. and Cantley, L.C. (2006) Determining protein kinase substrate specificity by parallel solution-phase assay of large numbers of peptide substrates. Nat. Protoc., 1, 375-379.
    • (2006) Nat. Protoc , vol.1 , pp. 375-379
    • Turk, B.E.1    Hutti, J.E.2    Cantley, L.C.3
  • 17
    • 70350247861 scopus 로고    scopus 로고
    • Modification-specific proteomics: Strategies for characterization of post-translational modifications using enrichment techniques
    • Zhao, Y. and Jensen, O.N. (2009) Modification-specific proteomics: strategies for characterization of post-translational modifications using enrichment techniques. Proteomics, 9, 4632-4641.
    • (2009) Proteomics , vol.9 , pp. 4632-4641
    • Zhao, Y.1    Jensen, O.N.2
  • 18
    • 34347237542 scopus 로고    scopus 로고
    • Predictive modeling of genome-wide mRNA expression: From modules to molecules
    • DOI 10.1146/annurev.biophys.36.040306.132725
    • Bussemaker, H.J., Foat, B.C. and Ward, L.D. (2007) Predictive modeling of genome-wide mRNA expression: from modules to molecules. Annu. Rev. Biophys. Biomol. Struct., 36, 329-347. (Pubitemid 46998122)
    • (2007) Annual Review of Biophysics and Biomolecular Structure , vol.36 , pp. 329-347
    • Bussemaker, H.J.1    Foat, B.C.2    Ward, L.D.3
  • 19
    • 0035135420 scopus 로고    scopus 로고
    • Regulatory element detection using correlation with expression
    • DOI 10.1038/84792
    • Bussemaker, H.J., Li, H. and Siggia, E.D. (2001) Regulatory element detection using correlation with expression. Nat. Genet., 27, 167-171. (Pubitemid 32157443)
    • (2001) Nature Genetics , vol.27 , Issue.2 , pp. 167-171
    • Bussemaker, H.J.1    Li, H.2    Siggia, E.D.3
  • 20
    • 0041352070 scopus 로고    scopus 로고
    • Transcriptional regulation of protein complexes and biological pathways
    • DOI 10.1007/s00335-002-2260-x
    • Hannenhalli, S. and Levy, S. (2003) Transcriptional regulation of protein complexes and biological pathways. Mamm. Genome, 14, 611-619. (Pubitemid 37056247)
    • (2003) Mammalian Genome , vol.14 , Issue.9 , pp. 611-619
    • Hannenhalli, S.1    Levy, S.2
  • 21
    • 27844482652 scopus 로고    scopus 로고
    • Estimating genomic coexpression networks using first-order conditional independence
    • Magwene, P.M. and Kim, J. (2004) Estimating genomic coexpression networks using first-order conditional independence. Genome Biol., 5, R100.
    • (2004) Genome Biol , vol.5
    • Magwene, P.M.1    Kim, J.2
  • 24
    • 34147179823 scopus 로고    scopus 로고
    • Clustering of genes into regulons using integrated modeling-COGRIM
    • Chen, G., Jensen, S.T. and Stoeckert, C.J. (2007) Clustering of genes into regulons using integrated modeling-COGRIM. Genome Biol., 8, R4.
    • (2007) Genome Biol , vol.8
    • Chen, G.1    Jensen, S.T.2    Stoeckert, C.J.3
  • 26
    • 41449112432 scopus 로고    scopus 로고
    • From promoter analysis to transcriptional regulatory network prediction using PAINT
    • Gonye, G.E., Chakravarthula, P., Schwaber, J.S. and Vadigepalli, R. (2007) From promoter analysis to transcriptional regulatory network prediction using PAINT. Methods Mol. Biol., 408, 49-68.
    • (2007) Methods Mol. Biol , vol.408 , pp. 49-68
    • Gonye, G.E.1    Chakravarthula, P.2    Schwaber, J.S.3    Vadigepalli, R.4
  • 28
    • 77249109446 scopus 로고    scopus 로고
    • Mimosa: Mixture model of co-expression to detect modulators of regulatory interaction
    • Hansen, M., Everett, L., Singh, L. and Hannenhalli, S. (2010) Mimosa: mixture model of co-expression to detect modulators of regulatory interaction. Algorithms Mol. Biol., 5, 4.
    • (2010) Algorithms Mol. Biol , vol.5 , pp. 4
    • Hansen, M.1    Everett, L.2    Singh, L.3    Hannenhalli, S.4
  • 29
    • 36448949766 scopus 로고    scopus 로고
    • Extracting three-way gene interactions from microarray data
    • DOI 10.1093/bioinformatics/btm482
    • Zhang, J., Ji, Y. and Zhang, L. (2007) Extracting three-way gene interactions from microarray data. Bioinformatics, 23, 2903-2909. (Pubitemid 350162897)
    • (2007) Bioinformatics , vol.23 , Issue.21 , pp. 2903-2909
    • Zhang, J.1    Ji, Y.2    Zhang, L.3
  • 31
    • 0037168518 scopus 로고    scopus 로고
    • Genome-wide coexpression dynamics: Theory and application
    • Li, K.C. (2002) Genome-wide coexpression dynamics: theory and application. Proc. Natl Acad. Sci. USA, 99, 16875-16880.
    • (2002) Proc. Natl Acad. Sci. USA , vol.99 , pp. 16875-16880
    • Li, K.C.1
  • 32
    • 33847357312 scopus 로고    scopus 로고
    • A genome-wide analysis in Saccharomyces cerevisiae demonstrates the influence of chromatin modifiers on transcription
    • DOI 10.1038/ng1965, PII NG1965
    • Steinfeld, I., Shamir, R. and Kupiec, M. (2007) A genome-wide analysis in Saccharomyces cerevisiae demonstrates the influence of chromatin modifiers on transcription. Nat. Genet., 39, 303-309. (Pubitemid 46331817)
    • (2007) Nature Genetics , vol.39 , Issue.3 , pp. 303-309
    • Steinfeld, I.1    Shamir, R.2    Kupiec, M.3
  • 33
    • 34548072035 scopus 로고    scopus 로고
    • Inference of transcription modification in long-live yeast strains from their expression profiles
    • Cheng, C., Fabrizio, P., Ge, H., Longo, V.D. and Li, L.M. (2007) Inference of transcription modification in long-live yeast strains from their expression profiles. BMC Genomics, 8, 219.
    • (2007) BMC Genomics , vol.8 , pp. 219
    • Cheng, C.1    Fabrizio, P.2    Ge, H.3    Longo, V.D.4    Li, L.M.5
  • 35
    • 10444240173 scopus 로고    scopus 로고
    • B-lymphocytes innate immunity, and autoimmunity
    • Viau, M. and Zouali, M. (2005) B-lymphocytes, innate immunity, and autoimmunity. Clin. Immunol., 114, 17-26.
    • (2005) Clin. Immunol , vol.114 , pp. 17-26
    • Viau, M.1    Zouali, M.2
  • 36
    • 0034658153 scopus 로고    scopus 로고
    • STAT signaling in the pathogenesis and treatment of leukemias
    • Lin, T.S., Mahajan, S. and Frank, D.A. (2000) STAT signaling in the pathogenesis and treatment of leukemias. Oncogene, 19, 2496-2504. (Pubitemid 30339205)
    • (2000) Oncogene , vol.19 , Issue.21 , pp. 2496-2504
    • Lin, T.S.1    Mahajan, S.2    Frank, D.A.3
  • 37
    • 0036884169 scopus 로고    scopus 로고
    • Lymphoid malignancies: The dark side of B-cell differentiation
    • DOI 10.1038/nri953
    • Shaffer, A.L., Rosenwald, A. and Staudt, L.M. (2002) Lymphoid malignancies: the dark side of B-cell differentiation. Nat. Rev. Immunol., 2, 920-932. (Pubitemid 37323213)
    • (2002) Nature Reviews Immunology , vol.2 , Issue.12 , pp. 920-932
    • Shaffer, A.L.1    Rosenwald, A.2    Staudt, L.M.3
  • 38
    • 0030840464 scopus 로고    scopus 로고
    • STATs and gene regulation
    • Darnell, J.E. (1997) STATs and gene regulation. Science, 277, 1630-1635.
    • (1997) Science , vol.277 , pp. 1630-1635
    • Darnell, J.E.1
  • 39
    • 18844457095 scopus 로고    scopus 로고
    • Mechanisms of type-I-and type-II-interferon-mediated signalling
    • Platanias, L.C. (2005) Mechanisms of type-I-and type-II-interferon- mediated signalling. Nat. Rev. Immunol., 5, 375-386.
    • (2005) Nat. Rev. Immunol , vol.5 , pp. 375-386
    • Platanias, L.C.1
  • 40
    • 0242468041 scopus 로고    scopus 로고
    • Regulation of JAK-STAT signalling in the immune system
    • Shuai, K. and Liu, B. (2003) Regulation of JAK-STAT signalling in the immune system. Nat. Rev. Immunol., 3, 900-911. (Pubitemid 37411719)
    • (2003) Nature Reviews Immunology , vol.3 , Issue.11 , pp. 900-911
    • Shuai, K.1    Liu, B.2
  • 41
    • 30444458235 scopus 로고    scopus 로고
    • Stats: Multifaceted regulators of transcription
    • DOI 10.1089/jir.2005.25.733
    • Brierley, M.M. and Fish, E.N. (2005) Stats: multifaceted regulators of transcription. J. Interferon. Cytokine Res., 25, 733-744. (Pubitemid 43071210)
    • (2005) Journal of Interferon and Cytokine Research , vol.25 , Issue.12 , pp. 733-744
    • Brierley, M.M.1    Fish, E.N.2
  • 42
    • 0021518209 scopus 로고
    • Stochastic relaxation, Gibbs distributions, and the Bayesian restoration of images
    • Geman, S. and Geman, D. (1984) Stochastic relaxation, Gibbs distributions, and the Bayesian restoration of images. IEEE Trans. Pattern Anal. Mach. Intell., 6, 721-741. (Pubitemid 15453722)
    • (1984) IEEE Transactions on Pattern Analysis and Machine Intelligence , vol.PAMI-6 , Issue.6 , pp. 721-741
    • Geman, S.1    Geman, D.2
  • 48
    • 0029960055 scopus 로고    scopus 로고
    • TRANSFAC: A database on transcription factors and their DNA binding sites
    • DOI 10.1093/nar/24.1.238
    • Wingender, E., Dietze, P., Karas, H. and Knü ppel, R. (1996) TRANSFAC: a database on transcription factors and their DNA binding sites. Nucleic Acids Res., 24, 238-241. (Pubitemid 26085775)
    • (1996) Nucleic Acids Research , vol.24 , Issue.1 , pp. 238-241
    • Wingender, E.1    Dietze, P.2    Karas, H.3    Knuppel, R.4
  • 50
    • 0036707816 scopus 로고    scopus 로고
    • Identification of transcription factor binding sites in the human genome sequence
    • DOI 10.1007/s00335-002-2175-6
    • Levy, S. and Hannenhalli, S. (2002) Identification of transcription factor binding sites in the human genome sequence. Mamm. Genome, 13, 510-514. (Pubitemid 34913603)
    • (2002) Mammalian Genome , vol.13 , Issue.9 , pp. 510-514
    • Levy, S.1    Hannenhalli, S.2
  • 52
    • 73049112582 scopus 로고    scopus 로고
    • Extracting transcription factor targets from ChIP-Seq data
    • Tuteja, G., White, P., Schug, J. and Kaestner, K.H. (2009) Extracting transcription factor targets from ChIP-Seq data. Nucleic Acids Res., 37, e113.
    • (2009) Nucleic Acids Res , vol.37
    • Tuteja, G.1    White, P.2    Schug, J.3    Kaestner, K.H.4
  • 53
    • 48449084853 scopus 로고    scopus 로고
    • The Predikin webserver: Improved prediction of protein kinase peptide specificity using structural information
    • Saunders, N.F.W. and Kobe, B. (2008) The Predikin webserver: improved prediction of protein kinase peptide specificity using structural information. Nucleic Acids Res., 36(Web Server issue), W286-W290.
    • (2008) Nucleic Acids Res , vol.36 , Issue.WEB SERV. ISS.
    • Saunders, N.F.W.1    Kobe, B.2
  • 56
    • 0031825456 scopus 로고    scopus 로고
    • A search in the genome of Saccharomyces cerevisiae for genes regulated via stress response elements
    • DOI 10.1002/(SICI)1097-0061(199808)14:11<1041::AID-YEA296>3.0.CO;2- 4
    • Moskvina, E., Schü ller, C., Maurer, C.T., Mager, W.H. and Ruis, H. (1998) A search in the genome of Saccharomyces cerevisiae for genes regulated via stress response elements. Yeast, 14, 1041-1050. (Pubitemid 28370774)
    • (1998) Yeast , vol.14 , Issue.11 , pp. 1041-1050
    • Moskvina, E.1    Schuller, C.2    Maurer, C.T.C.3    Mager, W.H.4    Ruis, H.5
  • 57
    • 0037144584 scopus 로고    scopus 로고
    • Convergence of the target of rapamycin and the Snf1 protein kinase pathways in the regulation of the subcellular localization of Msn2 a transcriptional activator of STRE (Stress Response Element)-regulated genes
    • Mayordomo, I., Estruch, F. and Sanz, P. (2002) Convergence of the target of rapamycin and the Snf1 protein kinase pathways in the regulation of the subcellular localization of Msn2, a transcriptional activator of STRE (Stress Response Element)-regulated genes. J. Biol. Chem., 277, 35650-35656.
    • (2002) J. Biol. Chem , vol.277 , pp. 35650-35656
    • Mayordomo, I.1    Estruch, F.2    Sanz, P.3
  • 58
    • 0032127462 scopus 로고    scopus 로고
    • Yeast PKA represses Msn2p/Msn4p-dependent gene expression to regulate growth, stress response and glycogen accumulation
    • DOI 10.1093/emboj/17.13.3556
    • Smith, A., Ward, M.P. and Garrett, S. (1998) Yeast PKA represses Msn2p/Msn4p-dependent gene expression to regulate growth, stress response and glycogen accumulation. EMBO J., 17, 3556-3564. (Pubitemid 28327374)
    • (1998) EMBO Journal , vol.17 , Issue.13 , pp. 3556-3564
    • Smith, A.1    Ward, M.P.2    Garrett, S.3
  • 63
    • 0033828333 scopus 로고    scopus 로고
    • Hyperphosphorylation of Msn2p and Msn4p in response to heat shock and the diauxic shift is inhibited by cAMP in Saccharomyces cerevisiae
    • Garreau, H., Hasan, R.N., Renault, G., Estruch, F., Boy-Marcotte, E. and Jacquet, M. (2000) Hyperphosphorylation of Msn2p and Msn4p in response to heat shock and the diauxic shift is inhibited by cAMP in Saccharomyces cerevisiae. Microbiology, 146(Pt 9), 2113-2120.
    • (2000) Microbiology , vol.146 , Issue.PART. 9 , pp. 2113-2120
    • Garreau, H.1    Hasan, R.N.2    Renault, G.3    Estruch, F.4    Boy-Marcotte, E.5    Jacquet, M.6
  • 64
    • 0037243093 scopus 로고    scopus 로고
    • Yeast glycogen synthase kinase-3 activates Msn2p-dependent transcription of stress responsive genes
    • DOI 10.1091/mbc.E02-05-0247
    • Hirata, Y., Andoh, T., Asahara, T. and Kikuchi, A. (2003) Yeast glycogen synthase kinase-3 activates Msn2p-dependent transcription of stress responsive genes. Mol. Biol. Cell, 14, 302-312. (Pubitemid 36106038)
    • (2003) Molecular Biology of the Cell , vol.14 , Issue.1 , pp. 302-312
    • Hirata, Y.1    Andoh, T.2    Asahara, T.3    Kikuchi, A.4
  • 65
    • 0035339092 scopus 로고    scopus 로고
    • Negative regulation of Gcn4 and Msn2 transcription factors by Srb10 cyclin-dependent kinase
    • DOI 10.1101/gad.867501
    • Chi, Y., Huddleston, M.J., Zhang, X., Young, R.A., Annan, R.S., Carr, S.A. and Deshaies, R.J. (2001) Negative regulation of Gcn4 and Msn2 transcription factors by Srb10 cyclin-dependent kinase. Genes Dev., 15, 1078-1092. (Pubitemid 32417301)
    • (2001) Genes and Development , vol.15 , Issue.9 , pp. 1078-1092
    • Chi, Y.1    Huddleston, M.J.2    Zhang, X.3    Young, R.A.4    Annan, R.S.5    Carr, S.A.6    Deshaies, R.J.7
  • 66
    • 54249109491 scopus 로고    scopus 로고
    • Yeast Yak1 kinase, a bridge between PKA and stress-responsive transcription factors, Hsf1 and Msn2/Msn4
    • Lee, P., Cho, B.R., Joo, H.S. and Hahn, J.S. (2008) Yeast Yak1 kinase, a bridge between PKA and stress-responsive transcription factors, Hsf1 and Msn2/Msn4. Mol. Microbiol., 70, 882-895.
    • (2008) Mol. Microbiol , vol.70 , pp. 882-895
    • Lee, P.1    Cho, B.R.2    Joo, H.S.3    Hahn, J.S.4
  • 69
    • 52349095482 scopus 로고    scopus 로고
    • Inferring condition-specific modulation of transcription factor activity in yeast through regulon-based analysis of genomewide expression
    • Boorsma, A., Lu, X.J., Zakrzewska, A., Klis, F.M. and Bussemaker, H.J. (2008) Inferring condition-specific modulation of transcription factor activity in yeast through regulon-based analysis of genomewide expression. PLoS ONE, 3, e3112.
    • (2008) PLoS ONE , vol.3
    • Boorsma, A.1    Lu, X.J.2    Zakrzewska, A.3    Klis, F.M.4    Bussemaker, H.J.5
  • 70
    • 0034057086 scopus 로고    scopus 로고
    • Thrombin inhibits tumor cell growth in association with up-regulation of p21(waf/cip1) and caspases via a p53-independent, STAT-1-dependent pathway
    • DOI 10.1074/jbc.275.9.6462
    • Huang, Y.Q., Li, J.J. and Karpatkin, S. (2000) Thrombin inhibits tumor cell growth in association with up-regulation of p21(waf/cip1) and caspases via a p53-independent, STAT-1-dependent pathway. J. Biol. Chem., 275, 6462-6468. (Pubitemid 30129944)
    • (2000) Journal of Biological Chemistry , vol.275 , Issue.9 , pp. 6462-6468
    • Huang, Y.-Q.1    Li, J.-J.2    Karpatkin, S.3
  • 71
    • 0034130327 scopus 로고    scopus 로고
    • Stat1 as a component of tumor necrosis factor alpha receptor 1-TRADD signaling complex to inhibit NF-κB activation
    • DOI 10.1128/MCB.20.13.4505-4512.2000
    • Wang, Y., Wu, T.R., Cai, S., Welte, T. and Chin, Y.E. (2000) Stat1 as a component of tumor necrosis factor alpha receptor 1-TRADD signaling complex to inhibit NF-kappaB activation. Mol. Cell. Biol., 20, 4505-4512. (Pubitemid 30396098)
    • (2000) Molecular and Cellular Biology , vol.20 , Issue.13 , pp. 4505-4512
    • Wang, Y.1    Wu, T.R.2    Cai, S.3    Welte, T.4    Chin, Y.E.5
  • 72
    • 35748980594 scopus 로고    scopus 로고
    • Cutting edge: Selective tyrosine dephosphorylation of interferon-activated nuclear STAT5 by the VHR phosphatase
    • Hoyt, R., Zhu, W., Cerignoli, F., Alonso, A., Mustelin, T. and David, M. (2007) Cutting edge: selective tyrosine dephosphorylation of interferon-activated nuclear STAT5 by the VHR phosphatase. J. Immunol., 179, 3402-3406.
    • (2007) J. Immunol , vol.179 , pp. 3402-3406
    • Hoyt, R.1    Zhu, W.2    Cerignoli, F.3    Alonso, A.4    Mustelin, T.5    David, M.6
  • 74
    • 0035103956 scopus 로고    scopus 로고
    • Vaccinia virus blocks gamma interferon signal transducton: Viral VH1 phosphatase reverses Stat1 activation
    • DOI 10.1128/JVI.75.7.3185-3196.2001
    • Najarro, P., Traktman, P. and Lewis, J.A. (2001) Vaccinia virus blocks gamma interferon signal transduction: viral VH1 phosphatase reverses Stat1 activation. J. Virol., 75, 3185-3196. (Pubitemid 32225882)
    • (2001) Journal of Virology , vol.75 , Issue.7 , pp. 3185-3196
    • Najarro, P.1    Traktman, P.2    Lewis, J.A.3
  • 75
    • 1342282158 scopus 로고    scopus 로고
    • Long-Term Suppression of Tumor Growth by TNF Requires a Stat1- and IFN Regulatory Factor 1-Dependent IFN-γ Pathway but Not IL-12 or IL-18
    • Wu, T.H., Pabin, C.N., Qin, Z., Blankenstein, T., Philip, M., Dignam, J., Schreiber, K. and Schreiber, H. (2004) Long-term suppression of tumor growth by TNF requires a Stat1-and IFN regulatory factor 1-dependent IFN-gamma pathway but not IL-12 or IL-18. J. Immunol., 172, 3243-3251. (Pubitemid 38263716)
    • (2004) Journal of Immunology , vol.172 , Issue.5 , pp. 3243-3251
    • Wu, T.H.1    Pabin, C.N.2    Qin, Z.3    Blankenstein, T.4    Philip, M.5    Dignam, J.6    Schreiber, K.7    Schreiber, H.8
  • 77
    • 62149143727 scopus 로고    scopus 로고
    • Protein acetylation microarray reveals that NuA4 controls key metabolic target regulating gluconeogenesis
    • Lin, Y.Y., Lu, J.Y., Zhang, J., Walter, W., Dang, W., Wan, J., Tao, S.C., Qian, J., Zhao, Y., Boeke, J.D. et al. (2009) Protein acetylation microarray reveals that NuA4 controls key metabolic target regulating gluconeogenesis. Cell, 136, 1073-1084.
    • (2009) Cell , vol.136 , pp. 1073-1084
    • Lin, Y.Y.1    Lu, J.Y.2    Zhang, J.3    Walter, W.4    Dang, W.5    Wan, J.6    Tao, S.C.7    Qian, J.8    Zhao, Y.9    Boeke, J.D.10
  • 79
    • 33745800293 scopus 로고    scopus 로고
    • Interpreting the protein language using proteomics
    • DOI 10.1038/nrm1939, PII NRM1939
    • Jensen, O.N. (2006) Interpreting the protein language using proteomics. Nat. Rev. Mol. Cell. Biol., 7, 391-403. (Pubitemid 44050093)
    • (2006) Nature Reviews Molecular Cell Biology , vol.7 , Issue.6 , pp. 391-403
    • Jensen, O.N.1
  • 80
    • 35848970747 scopus 로고    scopus 로고
    • Mapping protein post-translational modifications with mass spectrometry
    • DOI 10.1038/nmeth1100, PII NMETH1100
    • Witze, E.S., Old, W.M., Resing, K.A. and Ahn, N.G. (2007) Mapping protein post-translational modifications with mass spectrometry. Nat. Methods, 4, 798-806. (Pubitemid 350055576)
    • (2007) Nature Methods , vol.4 , Issue.10 , pp. 798-806
    • Witze, E.S.1    Old, W.M.2    Resing, K.A.3    Ahn, N.G.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.