Functional coupling of transcription factor HiNF-P and histone H4 gene expression during pre- and post-natal mouse development

Gene

Volumn 483, Issue 1-2, 2011, Pages 1-10

  Liu, Li Jun ^a   Xie, Ronglin ^a   Hussain, Sadiq ^a   Lian, Jane B ^a   Rivera Perez, Jaime ^a   Jones, Stephen N ^a   Stein, Janet L ^a   Stein, Gary S ^a   van Wijnen, Andre J ^a  

^a UNIVERSITY OF MASSACHUSETTS MEDICAL SCHOOL   (United States)

Author keywords

Blastocyst; Cell cycle; Development; Embryogenesis; Embryonic stem cells; Histone

Indexed keywords

BETA GALACTOSIDASE; HISTONE H4; MESSENGER RNA; TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR HISTONE NUCLEAR FACTOR P; UNCLASSIFIED DRUG;

ANIMAL CELL; ANIMAL TISSUE; ARTICLE; CELL CULTURE; CELL GROWTH; CONTROLLED STUDY; EMBRYO; EMBRYO DEVELOPMENT; FETUS DEVELOPMENT; GENE EXPRESSION; GROWTH INHIBITION; INTESTINE; LUNG; MOUSE; NONHUMAN; NUCLEOTIDE SEQUENCE; POSTNATAL DEVELOPMENT; PRENATAL DEVELOPMENT; PRIORITY JOURNAL; PROMOTER REGION; PROTEIN BLOOD LEVEL; SPLEEN; THYMUS;

ANIMALS; BLASTOCYST; CELL CYCLE; CELLS, CULTURED; EMBRYO, MAMMALIAN; GENE EXPRESSION; GENE EXPRESSION REGULATION, DEVELOPMENTAL; HISTONES; MICE; MICE, INBRED C57BL; REPRESSOR PROTEINS; TISSUE DISTRIBUTION;

MUS;

EID: 79960203909     PISSN: 03781119     EISSN: 18790038     Source Type: Journal    
DOI: 10.1016/j.gene.2011.05.002     Document Type: Article

References (67)

1. Albig W., Doenecke D. The human histone gene cluster at the D6S105 locus. Hum. Genet. 1997, 101:284-294.
2. Aziz F., et al. The integrated activities of IRF-2 (HiNF-M) CDP/cut (HiNF-D) and H4TF-2 (HiNF-P) regulate transcription of a cell cycle controlled human histone H4 gene: mechanistic differences between distinct H4 genes. Mol. Biol. Rep. 1998, 25:1-12.
3. Barcaroli D., et al. FLASH is required for histone transcription and S-phase progression. Proc. Natl. Acad. Sci. U. S. A. 2006, 103:14808-14812.
4. Baysal B.E., Willett-Brozick J.E., Taschner P.E., Dauwerse J.G., Devilee P., Devlin B. A high-resolution integrated map spanning the SDHD gene at 11q23: a 1.1-Mb BAC contig, a partial transcript map and 15 new repeat polymorphisms in a tumour-suppressor region. Eur. J. Hum. Genet. 2001, 9:121-129.
5. Becker K.A., Stein J.L., Lian J.B., van Wijnen A.J., Stein G.S. Establishment of histone gene regulation and cell cycle checkpoint control in human embryonic stem cells. J. Cell. Physiol. 2007, 210:517-526.
6. Bergmann A., Steller H. Apoptosis, stem cells, and tissue regeneration. Sci. Signal. 2010, 3:re8.
7. Birnbaum M.J., et al. Functional role for Sp1 in the transcriptional amplification of a cell cycle regulated histone H4 gene. Biochemistry 1995, 34:7648-7658.
8. Bongiorno-Borbone L., et al. FLASH and NPAT positive but not Coilin positive Cajal Bodies correlate with cell ploidy. Cell Cycle 2008, 7:2357-2367.
9. Braastad C.D., Hovhannisyan H., van Wijnen A.J., Stein J.L., Stein G.S. Functional characterization of a human histone gene cluster duplication. Gene 2004, 342:35-40.
10. Clarke H.J., Oblin C., Bustin M. Developmental regulation of chromatin composition during mouse embryogenesis: somatic histone H1 is first detectable at the 4-cell stage. Development 1992, 115:791-799.
11. DeRan M., Pulvino M., Greene E., Su C., Zhao J. Transcriptional activation of histone genes requires NPAT-dependent recruitment of TRRAP-Tip60 complex to histone promoters during the G1/S phase transition. Mol. Cell. Biol. 2008, 28:435-447.
12. Di Fruscio M., et al. Proviral inactivation of the Npat gene of Mpv 20 mice results in early embryonic arrest. Mol. Cell. Biol. 1997, 17:4080-4086.
13. Dominski Z., Marzluff W.F. Formation of the 3' end of histone mRNA: getting closer to the end. Gene 2007, 396:373-390.
14. Dominski Z., Yang X.C., Kaygun H., Dadlez M., Marzluff W.F. A 3' exonuclease that specifically interacts with the 3' end of histone mRNA. Mol. Cell 2003, 12:295-305.
15. Gerbaulet S.P., et al. Downregulation of histone H4 gene transcription during postnatal development in transgenic mice and at the onset of differentiation in transgenically derived calvarial osteoblast cultures. J. Cell. Biochem. 1992, 49:137-147.
16. NPAT in human embryonic stem cells. J. Cell. Physiol. 2007, 213:9-17.
17. Ghule P.N., Dominski Z., Lian J.B., Stein J.L., van Wijnen A.J., Stein G.S. The subnuclear organization of histone gene regulatory proteins and 3' end processing factors of normal somatic and embryonic stem cells is compromised in selected human cancer cell types. J. Cell. Physiol. 2009, 220:129-135.
18. Grana X., Garriga J., Mayol X. Role of the retinoblastoma protein family, pRB, p107 and p130 in the negative control of cell growth. Oncogene 1998, 17:3365-3383.
19. Graves R.A., Marzluff W.F., Giebelhaus D.H., Schultz G.A. Quantitative and qualitative changes in histone gene expression during early mouse embryo development. Proc. Natl. Acad. Sci. U. S. A. 1985, 82:5685-5689.
20. Guo B., Stein J.L., van Wijnen A.J., Stein G.S. ATF1 and CREB trans-activate a cell cycle regulated histone H4 gene at a distal nuclear matrix associated promoter element. Biochemistry 1997, 36:14447-14455.
21. Gupta S., et al. The tumor suppressor pRB functions as a co-repressor of the CCAAT displacement protein (CDP/cut) to regulate cell cycle controlled histone H4 transcription. J. Cell. Physiol. 2003, 196:541-546.
22. Harper D.P., Aplan P.D. Chromosomal rearrangements leading to MLL gene fusions: clinical and biological aspects. Cancer Res. 2008, 68:10024-10027.
23. Holmes W.F., et al. Coordinate control and selective expression of the full complement of replication-dependent histone H4 genes in normal and cancer cells. J. Biol. Chem. 2005, 280:37400-37407.
24. Hovhannisyan H., et al. Maintenance of open chromatin and selective genomic occupancy at the cell-cycle-regulated histone H4 promoter during differentiation of HL-60 promyelocytic leukemia cells. Mol. Cell. Biol. 2003, 23:1460-1469.
25. Kalla C., et al. Analysis of 11q22-q23 deletion target genes in B-cell chronic lymphocytic leukaemia: evidence for a pathogenic role of NPAT, CUL5, and PPP2R1B. Eur. J. Cancer 2007, 43:1328-1335.
26. Last T.J., van Wijnen A.J., Birnbaum M.J., Stein G.S., Stein J.L. Multiple interactions of the transcription factor YY1 with human histone H4 gene regulatory elements. J. Cell. Biochem. 1999, 72:507-516.
27. Last T.J., van Wijnen A.J., de Ridder M.C., Stein G.S., Stein J.L. The homeodomain transcription factor CDP/cut interacts with the cell cycle regulatory element of histone H4 genes packaged into nucleosomes. Mol. Biol. Rep. 1999, 26:185-194.
28. Le X.F., et al. Anti-HER2 antibody trastuzumab inhibits CDK2-mediated NPAT and histone H4 expression via the PI3K pathway. Cell Cycle 2006, 5:1654-1661.
29. Lichtler A.C., Sierra F., Clark S., Wells J.R., Stein J.L., Stein G.S. Multiple H4 histone mRNAs of HeLa cells are encoded in different genes. Nature 1982, 298:195-198.
30. Luong M.X., et al. Genetic ablation of the CDP/Cux protein C terminus results in hair cycle defects and reduced male fertility. Mol. Cell. Biol. 2002, 22:1424-1437.
31. Ma T., et al. Cell cycle-regulated phosphorylation of p220(NPAT) by cyclin E/Cdk2 in Cajal bodies promotes histone gene transcription. Genes Dev. 2000, 14:2298-2313.
32. Marzluff W.F., Gongidi P., Woods K.R., Jin J., Maltais L.J. The human and mouse replication-dependent histone genes. Genomics 2002, 80:487-498.
33. NPAT. Biochemistry 2006, 45:15915-15920.
34. NPAT cell cycle signaling pathway controls non-histone target genes. Cancer Res. 2007, 67:10334-10342.
35. Medina R., et al. The histone gene cell cycle regulator HiNF-P is a unique zinc finger transcription factor with a novel conserved auxiliary DNA-binding motif. Biochemistry 2008, 47:11415-11423.
36. NPAT pathway to histone H4 gene regulation at the G1/S phase cell cycle transition. Mol. Cell. Biol. 2005, 25:6140-6153.
37. Miele A., Medina R., van Wijnen A.J., Stein G.S., Stein J.L. The interactome of the histone gene regulatory factor HiNF-P suggests novel cell cycle related roles in transcriptional control and RNA processing. J. Cell. Biochem. 2007, 102:136-148.
38. Mitra P., et al. Identification of HiNF-P, a key activator of cell cycle controlled histone H4 genes at the onset of S phase. Mol. Cell. Biol. 2003, 23:8110-8123.
39. Mitra P., Xie R., Harper J.W., Stein J.L., Stein G.S., van Wijnen A.J. HiNF-P is a bifunctional regulator of cell cycle controlled histone H4 gene transcription. J. Cell. Biochem. 2007, 101:181-191.
40. Mitra P., et al. CDK inhibitors selectively diminish cell cycle controlled activation of the histone H4 gene promoter by p220(NPAT) and HiNF-P. J. Cell. Physiol. 2009, 219:438-448.
41. Osley M.A. The regulation of histone synthesis in the cell cycle. Annu. Rev. Biochem. 1991, 60:827-861.
42. Pauli U., Chrysogelos S., Stein G., Stein J., Nick H. Protein-DNA interactions in vivo upstream of a cell cycle- regulated human H4 histone gene. Science 1987, 236:1308-1311.
43. Pirngruber J., Johnsen S.A. Induced G1 cell-cycle arrest controls replication-dependent histone mRNA 3' end processing through p21, NPAT and CDK9. Oncogene 2010, 29:2853-2863.
44. Ramsey-Ewing A., van Wijnen A.J., Stein G.S., Stein J.L. Delineation of a human histone H4 cell cycle element in vivo: the master switch for H4 gene transcription. Proc. Natl. Acad. Sci. U. S. A. 1994, 91:4475-4479.
45. Seiler-Tuyns A., Paterson B.M. Cell cycle regulation of a mouse histone H4 gene requires the H4 promoter. Mol. Cell. Biol. 1987, 7:1048-1054.
46. Stein G.S., Stein J.L., Marzluff W.F. Histone Genes 1984, John Wiley & Sons, Inc., New York.
47. Stein G.S., et al. An architectural perspective of cell-cycle control at the G1/S phase cell-cycle transition. J. Cell. Physiol. 2006, 209:706-710.
48. Su C., et al. DNA damage induces downregulation of histone gene expression through the G1 checkpoint pathway. EMBO J. 2004, 23:1133-1143.
49. van der Meijden C.M.J., et al. Selective expression of specific histone H4 genes reflects distinctions in transcription factor interactions with divergent H4 promoter elements. Biochim. Biophys. Acta 1998, 1442:82-100.
50. van Wijnen A.J., et al. Involvement of the cell cycle-regulated nuclear factor HiNF-D in cell growth control of a human H4 histone gene during hepatic development in transgenic mice. Proc. Natl. Acad. Sci. U S A 1991, 88:2573-2577.
51. van Wijnen A.J., van den Ent F.M., Lian J.B., Stein J.L., Stein G.S. Overlapping and CpG methylation-sensitive protein-DNA interactions at the histone H4 transcriptional cell cycle domain: distinctions between two human H4 gene promoters. Mol. Cell. Biol. 1992, 12:3273-3287.
52. van Wijnen A.J., et al. Transcription of histone H4, H3, and H1 cell cycle genes: promoter factor HiNF-D contains CDC2, cyclin A, and an RB-related protein. Proc. Natl. Acad. Sci. U S A 1994, 91:12882-12886.
53. 1/S phase cell cycle transition point independent of transcription factor E2F. Proc. Natl. Acad. Sci. U S A 1996, 93:11516-11521.
54. Vaughan P.S., et al. Activation of a cell-cycle-regulated histone gene by the oncogenic transcription factor IRF-2. Nature 1995, 377:362-365.
55. Vaughan P.S., van Wijnen A.J., Stein J.L., Stein G.S. Interferon regulatory factors: growth control and histone gene regulation-it's not just interferon anymore. J. Mol. Med. 1997, 75:348-359.
56. Wei Y., Jin J., Harper J.W. The cyclin E/Cdk2 substrate and Cajal body component p220(NPAT) activates histone transcription through a novel LisH-like domain. Mol. Cell. Biol. 2003, 23:3669-3680.
57. Weigel M.T., Dowsett M. Current and emerging biomarkers in breast cancer: prognosis and prediction. Endocr. Relat. Cancer 2010, 17:R245-R262.
58. Xie R., van Wijnen A.J., van der Meijden C.M.J., Luong M.X., Stein J.L., Stein G.S. The cell cycle control element of histone H4 gene transcription is maximally responsive to interferon regulatory factor pairs IRF-1/IRF-3 and IRF-1/IRF-7. J. Biol. Chem. 2001, 276:18624-18632.
59. Xie R.L., van Wijnen A.J., van der Meijden C.M., Stein J.L., Stein G.S. Forced expression of the interferon regulatory factor 2 oncoprotein causes polyploidy and cell death in FDC-P1 myeloid hematopoietic progenitor cells. Cancer Res. 2002, 62:2510-2515.
60. Xie R.L., Liu L., Mitra P., Stein J.L., van Wijnen A.J., Stein G.S. Transcriptional activation of the histone nuclear factor P (HiNF-P) gene by HiNF-P and its cyclin E/CDK2 responsive co-factor p220(NPAT) defines a novel autoregulatory loop at the G1/S phase transition. Gene 2007, 402:94-102.
61. Xie R., et al. The histone gene activator HINFP is a non-redundant cyclin E/CDK2 effector during early embryonic cell cycles. Proc. Natl. Acad. Sci U S A 2009, 106:12359-12364.
62. Yang X.C., Burch B.D., Yan Y., Marzluff W.F., Dominski Z. FLASH, a proapoptotic protein involved in activation of caspase-8, is essential for 3' end processing of histone pre-mRNAs. Mol. Cell 2009, 36:267-278.
63. Yang X.C., Sullivan K.D., Marzluff W.F., Dominski Z. Studies of the 5' exonuclease and endonuclease activities of CPSF-73 in histone pre-mRNA processing. Mol. Cell. Biol. 2009, 29:31-42.
64. Yang X.C., et al. FLASH is required for the endonucleolytic cleavage of histone pre-mRNAs but is dispensable for the 5' exonucleolytic degradation of the downstream cleavage product. Mol. Cell. Biol. 2011, 31:1492-1502.
65. Ye X., Wei Y., Nalepa G., Harper J.W. The cyclin E/Cdk2 substrate p220(NPAT) is required for S-phase entry, histone gene expression, and Cajal body maintenance in human somatic cells. Mol. Cell. Biol. 2003, 23:8586-8600.
66. Zhao J., Dynlacht B., Imai T., Hori T., Harlow E. Expression of NPAT, a novel substrate of cyclin E-CDK2, promotes S-phase entry. Genes Dev. 1998, 12:456-461.
67. Zhao J., et al. NPAT links cyclin E-Cdk2 to the regulation of replication-dependent histone gene transcription. Genes Dev. 2000, 14:2283-2297.