Maintenance of open chromatin and selective genomic occupancy at the cell cycle-regulated histone H4 promoter during differentiation of HL-60 promyelocytic leukemia cells

Molecular and Cellular Biology

Volumn 23, Issue 4, 2003, Pages 1460-1469

  Hovhannisyan, Hayk ^a   Cho, Brian ^a   Mitra, Partha ^a   Montecino, Martin ^b   Stein, Gary S ^a   Van Wijnen, Andre J ^a   Stein, Janet L ^a  

^a UNIVERSITY OF MASSACHUSETTS MEDICAL SCHOOL   (United States)

^b UNIVERSITY OF CONCEPCIÓN   (Chile)

Author keywords

[No Author keywords available]

Indexed keywords

CYCLIN DEPENDENT KINASE INHIBITOR; HISTONE H4; PROTEIN P21;

ACETYLATION; ARTICLE; CELL CYCLE; CELL DIFFERENTIATION; CELL STRAIN HL 60; CHROMATIN; GENETIC TRANSCRIPTION; GENOME; HUMAN; HUMAN CELL; IMMUNOBLOTTING; LEUKEMIA CELL; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROMOTER REGION; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION;

ACETYLATION; CELL CYCLE; CELL DIFFERENTIATION; CELL LINEAGE; CHROMATIN; DEOXYRIBONUCLEASE I; DOWN-REGULATION; GENE EXPRESSION REGULATION; HISTONES; HL-60 CELLS; HUMANS; MACROPHAGES; MICROCOCCAL NUCLEASE; MONOCYTES; NUCLEOSOMES; PROMOTER REGIONS (GENETICS); PROTEINS; REGULATORY SEQUENCES, NUCLEIC ACID; REPRESSOR PROTEINS; RESTRICTION MAPPING; TRANSCRIPTION FACTORS;

EID: 0037313262     PISSN: 02707306     EISSN: None     Source Type: Journal    
DOI: 10.1128/MCB.23.4.1460-1469.2003     Document Type: Article

References (41)

1. Ausubel, F. M., R. Brent, R. E. Kingston, D. D. Moore, J. G. Seidman, J. A. Smith, and K. Struhl. 1997. Current protocols in molecular biology. John Wiley & Sons, New York, N.Y.
2. Aziz, F., A. J. van Wijnen, P. S. Vaughan, S. Wu, A. R. Shakoori, J. B. Lian, K. J. Soprano, J. L. Stein, and G. S. Stein. 1998. The integrated activities of IRF-2 (HiNF-M) CDP/cut (HiNF-D) and H4TF-2 (HiNF-P) regulate transcription of a cell cycle controlled human histone H4 gene: mechanistic differences between distinct H4 genes. Mol. Biol. Rep. 25:1-12.
3. Baumbach, L. L., G. S. Stein, and J. L. Stein. 1987. Regulation of human histone gene expression: transcriptional and posttranscriptional control in the coupling of histone messenger RNA stability with DNA replication. Biochemistry 26:6178-6187.
4. Birnbaum, M. J., K. L. Wright, A. J. van Wijnen, A. L. Ramsey-Ewing, M. T. Bourke, T. J. Last, F. Aziz, B. Frenkel, B. R. Rao, N. Aronin, G. S. Stein, and J. L. Stein. 1995. Functional role for Sp1 in the transcriptional amplification of a cell cycle regulated histone H4 gene. Biochemistry 34:7648-7658.
5. Bulger, M., and M. Groudine. 1999. Looping versus linking: toward a model for long-distance gene activation. Genes Dev. 13:2465-2477.
6. Chrysogelos, S., D. E. Riley, G. Stein, and J. Stein. 1985. A human histone H4 gene exhibits cell cycle-dependent changes in chromatin structure that correlate with its expression. Proc. Natl. Acad. Sci. USA 82:7535-7539.
7. Collart, D. G., K. L. Wright, A. J. van Wijnen, A. L. Ramsey, J. Lian, J. L. Stein, and G. S. Stein. 1988. The human H1 histone gene FNC16 is functionally expressed in proliferating HeLa S3 cells and is down-regulated during terminal differentiation in HL60 cells. J. Biol. Chem. 263:15860-15863.
8. Forsberg, E. C., and E. H. Bresnick. 2001. Histone acetylation beyond promoters: long-range acetylation patterns in the chromatin world. Bioessays 23:820-830.
9. Francis, N. J., and R. E. Kingston. 2001. Mechanisms of transcriptional memory. Nat. Rev. Mol. Cell Biol. 2:409-421.
10. Gross, D. S., and W. T. Garrard. 1988. Nuclease hypersensitive sites in chromatin. Annu. Rev. Biochem. 57:159-197.
11. Guo, B., J. L. Stein, A. J. van Wijnen, and G. S. Stein. 1997. ATF1 and CREB trans-activate a cell cycle regulated histone H4 gene at a distal nuclear matrix associated promoter element. Biochemistry 36:14447-14455.
12. Harris, P. E., P. Ralph, J. Gabrilove, K. Welte, R. Karmali, and M. A. Moore. 1985. Distinct differentiation-inducing activities of gamma-interferon and cytokine factors acting on the human promyelocytic leukemia cell line HL-60. Cancer Res. 45:3090-3095.
13. Hass, R., H. Gunji, R. Datta, S. Kharbanda, A. Hartmann, R. Weichselbaum, and D. Kufe. 1992. Differentiation and retrodifferentiation of human myeloid leukemia cells is associated with reversible induction of cell cycleregulatory genes. Cancer Res. 52:1445-1450.
14. Jiang, H., J. Lin, Z. Z. Su, F. R. Collart, E. Huberman, and P. B. Fisher. 1994. Induction of differentiation in human promyelocytic HL-60 leukemia cells activates p21, WAF1/CIP1, expression in the absence of p53. Oncogene 9:3397-3406.
15. Kingston, R. E., C. A. Bunker, and A. N. Imbalzano. 1996. Repression and activation by multiprotein complexes that alter chromatin structure. Genes Dev. 10:905-920.
16. Kontaraki, J., H. H. Chen, A. Riggs, and C. Bonifer. 2000. Chromatin fine structure profiles for a developmentally regulated gene: reorganization of the lysozyme locus before trans-activator binding and gene expression. Genes Dev. 14:2106-2122.
17. Kouzarides, T. 2000. Acetylation: a regulatory modification to rival phosphorylation? EMBO J. 19:1176-1179.
18. Kroeger, P., C. Stewart, T. Schaap, A. van Wijnen, J. Hirshman, S. Helms, G. Stein, and J. Stein. 1987. Proximal and distal regulatory elements that influence in vivo expression of a cell cycle-dependent human H4 histone gene. Proc. Natl. Acad. Sci. USA 84:3982-3986.
19. Montecino, M., J. Lian, G. Stein, and J. Stein. 1996. Changes in chromatin structure support constitutive and developmentally regulated transcription of the bone-specific osteocalcin gene in osteoblastic cells. Biochemistry 35:5093-5102.
20. Montecino, M., S. Pockwinse, J. Lian, G. Stein, and J. Stein. 1994. DNase I hypersensitive sites in promoter elements associated with basal and vitamin D dependent transcription of the bone-specific osteocalcin gene. Biochemistry 33:348-353.
21. Moreno, M. L., S. A. Chrysogelos, G. S. Stein, and J. L. Stein. 1986. Reversible changes in the nucleosomal organization of a human H4 histone gene during the cell cycle. Biochemistry 25:5364-5370.
22. Mueller, P., P. Garrity, and B. Wold. 1997. Ligation-mediated PCR for genomic sequencing and footprinting, p. 15.5.1-15.5.26. In F. M. Ausubel, R. Brent, R. E. Kingston, D. D. Moore, J. G. Seidman, and J. A. Smith (ed.), Current protocols in molecular biology. John Wiley & Sons, New York, N.Y.
23. O'Neill, L. P., and B. M. Turner. 1995. Histone H4 acetylation distinguishes coding regions of the human genome from heterochromatin in a differentiation-dependent but transcription-independent manner. EMBO J. 14:3946-3957.
24. Pauli, U., S. Chrysogelos, G. Stein, J. Stein, and H. Nick. 1987. Protein-DNA interactions in vivo upstream of a cell cycle-regulated human H4 histone gene. Science 236:1308-1311.
25. Peterson, C. L., and J. L. Workman. 2000. Promoter targeting and chromatin remodeling by the SWI/SNF complex. Curr. Opin. Genet. Dev. 10:187-192.
26. Ramsey-Ewing, A., A. J. van Wijnen, G. S. Stein, and J. L. Stein. 1994. Delineation of a human histone H4 cell cycle element in vivo: the master switch for H4 gene transcription. Proc. Natl. Acad. Sci. USA 91:4475-4479.
27. Rice, J. C., and C. D. Allis. 2001. Histone methylation versus histone acetylation: new insights into epigenetic regulation. Curr. Opin. Cell Biol. 13:263-273.
28. Rollini, P., and R. E. Fournier. 1999. Long-range chromatin reorganization of the human serpin gene cluster at 14q32.1 accompanies gene activation and extinction in microcell hybrids. Genomics 56:22-30.
29. Rovera, G., D. Santoli, and C. Damsky. 1979. Human promyelocytic leukemia cells in culture differentiate into macrophage-like cells when treated with a phorbol diester. Proc. Natl. Acad. Sci. USA 76:2779-2783.
30. Sambucetti, L. C., D. D. Fischer, S. Zabludoff, P. O. Kwon, H. Chamberlin, N. Trogani, H. Xu, and D. Cohen. 1999. Histone deacetylase inhibition selectively alters the activity and expression of cell cycle proteins leading to specific chromatin acetylation and antiproliferative effects. J. Biol. Chem. 274:34940-34947.
31. Schubeler, D., C. Francastel, D. M. Cimbora, A. Reik, D. I. Martin, and M. Groudine. 2000. Nuclear localization and histone acetylation: a pathway for chromatin opening and transcriptional activation of the human beta-globin locus. Genes Dev. 14:940-950.
32. Spencer, V. A., and J. R. Davie. 1999. Role of covalent modifications of histones in regulating gene expression. Gene 240:1-12.
33. Stein, G., J. Lian, J. Stein, R. Briggs, V. Shalhoub, K. Wright, U. Pauli, and A. van Wijnen. 1989. Altered binding of human histone gene transcription factors during the shutdown of proliferation and onset of differentiation in HL-60 cells. Proc. Natl. Acad. Sci. USA 86:1865-1869.
34. Stein, G. S., M. Montecino, A. J. van Wijnen, J. L. Stein, and J. B. Lian. 2000. Nuclear structure-gene expression interrelationships: implications for aberrant gene expression in cancer. Cancer Res. 60:2067-2076.
35. 1/S phase and proliferation/differentiation transitions. Cell Biol. Int. 20:41-49.
36. Strahl, B. D., and C. D. Allis. 2000. The language of covalent histone modifications. Nature 403:41-45.
37. van den Ent, F. M., A. J. van Wijnen, J. B. Lian, J. L. Stein, and G. S. Stein. 1994. Cell cycle controlled histone H1, H3, and H4 genes share unusual arrangements of recognition motifs for HiNF-D supporting a coordinate promoter binding mechanism. J. Cell. Physiol. 159:515-530.
38. van der Meijden, C. M. J., P. S. Vaughan, A. Staal, W. Albig, D. Doenecke, J. L. Stein, G. S. Stein, and A. J. van Wijnen. 1998. Selective expression of specific histone H4 genes reflects distinctions in transcription factor interactions with divergent H4 promoter elements. Biochim. Biophys. Acta 1442:82-100.
39. van Wijnen, A. J., F. M. van den Ent, J. B. Lian, J. L. Stein, and G. S. Stein. 1992. Overlapping and CpG methylation-sensitive protein-DNA interactions at the histone H4 transcriptional cell cycle domain: distinctions between two human H4 gene promoters. Mol. Cell. Biol. 12:3273-3287.
40. Vaughan, P. S., F. Aziz, A. J. van Wijnen, S. Wu, H. Harada, T. Taniguchi, K. J. Soprano, J. L. Stein, and G. S. Stein. 1995. Activation of a cell-cycle-regulated histone gene by the oncogenic transcription factor IRF-2. Nature 377:362-365.
41. Zeng, Y. X., and W. S. el Deiry. 1996. Regulation of p21WAF1/CIP1 expression by p53-independent pathways. Oncogene 12:1557-1564.