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Volumn 721, Issue , 2011, Pages 231-244

Slicer Activity in Drosophila melanogaster S2 Extract

Author keywords

Argonaute; Cell free extracts; Drosophila; mRNA cleavage; RNAi; siRISC

Indexed keywords

CELL EXTRACT; GUANOSINE TRIPHOSPHATE; MESSENGER RNA; RIBONUCLEASE H;

EID: 79960071615     PISSN: 10643745     EISSN: 19406029     Source Type: Book Series    
DOI: 10.1007/978-1-61779-037-9_14     Document Type: Chapter
Times cited : (5)

References (38)
  • 1
    • 0032443021 scopus 로고    scopus 로고
    • Use of dsRNA-mediated genetic interference to demonstrate that frizzled and frizzled 2 act in the wingless pathway
    • Kennerdell, J. R., and Carthew, R. W. (1998) Use of dsRNA-mediated genetic interference to demonstrate that frizzled and frizzled 2 act in the wingless pathway, Cell 95, 1017–1026.
    • (1998) Cell , vol.95 , pp. 1017-1026
    • Kennerdell, J.R.1    Carthew, R.W.2
  • 2
    • 63349111149 scopus 로고    scopus 로고
    • Small RNAs and the control of transposons and viruses in Drosophila
    • van Rij, R. P., and Berezikov, E. (2009) Small RNAs and the control of transposons and viruses in Drosophila, Trends Microbiol 17, 163–171.
    • (2009) Trends Microbiol , vol.17 , pp. 163-171
    • van Rij, R.P.1    Berezikov, E.2
  • 3
    • 0034609759 scopus 로고    scopus 로고
    • Evidence that processed small dsRNAs may mediate sequence-specific mRNA degradation during RNAi in Drosophila embryos
    • Yang, D., Lu, H., and Erickson, J. W. (2000) Evidence that processed small dsRNAs may mediate sequence-specific mRNA degradation during RNAi in Drosophila embryos, Curr Biol 10, 1191–1200.
    • (2000) Curr Biol , vol.10 , pp. 1191-1200
    • Yang, D.1    Lu, H.2    Erickson, J.W.3
  • 4
    • 0034737298 scopus 로고    scopus 로고
    • RNAi: Double-stranded RNA directs the ATP-dependent cleavage of mRNA at 21 to 23 nucleotide intervals
    • Zamore, P. D., Tuschl, T., Sharp, P. A., and Bartel, D. P. (2000) RNAi: double-stranded RNA directs the ATP-dependent cleavage of mRNA at 21 to 23 nucleotide intervals, Cell 101, 25–33.
    • (2000) Cell , vol.101 , pp. 25-33
    • Zamore, P.D.1    Tuschl, T.2    Sharp, P.A.3    Bartel, D.P.4
  • 5
    • 0034673638 scopus 로고    scopus 로고
    • An RNA-directed nuclease mediates post-transcriptional gene silencing in Drosophila cells
    • Hammond, S. M., Bernstein, E., Beach, D., and Hannon, G. J. (2000) An RNA-directed nuclease mediates post-transcriptional gene silencing in Drosophila cells, Nature 404, 293–296.
    • (2000) Nature , vol.404 , pp. 293-296
    • Hammond, S.M.1    Bernstein, E.2    Beach, D.3    Hannon, G.J.4
  • 6
    • 0035839109 scopus 로고    scopus 로고
    • Argonaute2, a link between genetic and biochemical analyses of RNAi
    • Hammond, S. M., Boettcher, S., Caudy, A. A., Kobayashi, R., and Hannon, G. J. (2001) Argonaute2, a link between genetic and biochemical analyses of RNAi, Science 293, 1146–1150.
    • (2001) Science , vol.293 , pp. 1146-1150
    • Hammond, S.M.1    Boettcher, S.2    Caudy, A.A.3    Kobayashi, R.4    Hannon, G.J.5
  • 7
    • 0035798415 scopus 로고    scopus 로고
    • ATP requirements and small interfering RNA structure in the RNA interference pathway
    • Nykanen, A., Haley, B., and Zamore, P. D. (2001) ATP requirements and small interfering RNA structure in the RNA interference pathway, Cell 107, 309–321.
    • (2001) Cell , vol.107 , pp. 309-321
    • Nykanen, A.1    Haley, B.2    Zamore, P.D.3
  • 8
    • 0036792769 scopus 로고    scopus 로고
    • Fragile X-related protein and VIG associate with the RNA interference machinery
    • Caudy, A. A., Myers, M., Hannon, G. J., and Hammond, S. M. (2002) Fragile X-related protein and VIG associate with the RNA interference machinery, Genes Dev 16, 2491–2496.
    • (2002) Genes Dev , vol.16 , pp. 2491-2496
    • Caudy, A.A.1    Myers, M.2    Hannon, G.J.3    Hammond, S.M.4
  • 10
    • 27744506761 scopus 로고    scopus 로고
    • Argonaute2 cleaves the anti-guide strand of siRNA during RISC activation
    • Rand, T. A., Petersen, S., Du, F., and Wang, X. (2005) Argonaute2 cleaves the anti-guide strand of siRNA during RISC activation, Cell 123, 621–629.
    • (2005) Cell , vol.123 , pp. 621-629
    • Rand, T.A.1    Petersen, S.2    Du, F.3    Wang, X.4
  • 12
    • 28444437427 scopus 로고    scopus 로고
    • Slicer function of Drosophila Argonautes and its involvement in RISC formation
    • Miyoshi, K., Tsukumo, H., Nagami, T., Siomi, H., and Siomi, M. C. (2005) Slicer function of Drosophila Argonautes and its involvement in RISC formation, Genes Dev 19, 2837–2848.
    • (2005) Genes Dev , vol.19 , pp. 2837-2848
    • Miyoshi, K.1    Tsukumo, H.2    Nagami, T.3    Siomi, H.4    Siomi, M.C.5
  • 13
    • 0345359925 scopus 로고    scopus 로고
    • Structure and nucleic-acid binding of the Drosophila Argonaute 2 PAZ domain
    • Lingel, A., Simon, B., Izaurralde, E., and Sattler, M. (2003) Structure and nucleic-acid binding of the Drosophila Argonaute 2 PAZ domain, Nature 426, 465–469.
    • (2003) Nature , vol.426 , pp. 465-469
    • Lingel, A.1    Simon, B.2    Izaurralde, E.3    Sattler, M.4
  • 14
    • 11244279683 scopus 로고    scopus 로고
    • Crystal structure of a PIWI protein suggests mechanisms for siRNA recognition and slicer activity
    • Parker, J. S., Roe, S. M., and Barford, D. (2004) Crystal structure of a PIWI protein suggests mechanisms for siRNA recognition and slicer activity, EMBO J 23, 4727–4737.
    • (2004) EMBO J , vol.23 , pp. 4727-4737
    • Parker, J.S.1    Roe, S.M.2    Barford, D.3
  • 15
    • 26944497194 scopus 로고    scopus 로고
    • Structural domains in RNAi
    • Collins, R. E., and Cheng, X. (2005) Structural domains in RNAi, FEBS Lett 579, 5841–5849.
    • (2005) FEBS Lett , vol.579 , pp. 5841-5849
    • Collins, R.E.1    Cheng, X.2
  • 17
    • 58749113430 scopus 로고    scopus 로고
    • A three-dimensional view of the molecular machinery of RNA interference
    • Jinek, M., and Doudna, J. A. (2009) A three-dimensional view of the molecular machinery of RNA interference, Nature 457, 405–412.
    • (2009) Nature , vol.457 , pp. 405-412
    • Jinek, M.1    Doudna, J.A.2
  • 18
    • 41949104147 scopus 로고    scopus 로고
    • Exploring systemic RNA interference in insects: A genome-wide survey for RNAi genes in Tribolium
    • Tomoyasu, Y., Miller, S. C., Tomita, S., Schoppmeier, M., Grossmann, D., and Bucher, G. (2008) Exploring systemic RNA interference in insects: a genome-wide survey for RNAi genes in Tribolium, Genome Biol 9, R10.
    • (2008) Genome Biol , vol.9 , pp. R10
    • Tomoyasu, Y.1    Miller, S.C.2    Tomita, S.3    Schoppmeier, M.4    Grossmann, D.5    Bucher, G.6
  • 19
    • 0035905766 scopus 로고    scopus 로고
    • Role for a bidentate ribonuclease in the initiation step of RNA interference
    • Bernstein, E., Caudy, A. A., Hammond, S. M., and Hannon, G. J. (2001) Role for a bidentate ribonuclease in the initiation step of RNA interference, Nature 409, 363–366.
    • (2001) Nature , vol.409 , pp. 363-366
    • Bernstein, E.1    Caudy, A.A.2    Hammond, S.M.3    Hannon, G.J.4
  • 20
    • 0035863097 scopus 로고    scopus 로고
    • RNA interference is mediated by 21-and 22-nucleotide RNAs
    • Elbashir, S. M., Lendeckel, W., and Tuschl, T. (2001) RNA interference is mediated by 21-and 22-nucleotide RNAs, Genes Dev 15, 188–200.
    • (2001) Genes Dev , vol.15 , pp. 188-200
    • Elbashir, S.M.1    Lendeckel, W.2    Tuschl, T.3
  • 21
    • 0141868916 scopus 로고    scopus 로고
    • R2D2, a bridge between the initiation and effector steps of the Drosophila RNAi pathway
    • Liu, Q., Rand, T. A., Kalidas, S., Du, F., Kim, H. E., Smith, D. P., and Wang, X. (2003) R2D2, a bridge between the initiation and effector steps of the Drosophila RNAi pathway, Science 301, 1921–1925.
    • (2003) Science , vol.301 , pp. 1921-1925
    • Liu, Q.1    Rand, T.A.2    Kalidas, S.3    Du, F.4    Kim, H.E.5    Smith, D.P.6    Wang, X.7
  • 22
    • 1842766252 scopus 로고    scopus 로고
    • A Dicer-2-dependent 80 s complex cleaves targeted mRNAs during RNAi in Drosophila
    • Pham, J. W., Pellino, J. L., Lee, Y. S., Carthew, R. W., and Sontheimer, E. J. (2004) A Dicer-2-dependent 80 s complex cleaves targeted mRNAs during RNAi in Drosophila, Cell 117, 83–94.
    • (2004) Cell , vol.117 , pp. 83-94
    • Pham, J.W.1    Pellino, J.L.2    Lee, Y.S.3    Carthew, R.W.4    Sontheimer, E.J.5
  • 23
    • 27744477630 scopus 로고    scopus 로고
    • Molecular requirements for RNA-induced silencing complex assembly in the Drosophila RNA interference pathway
    • Pham, J. W., and Sontheimer, E. J. (2005) Molecular requirements for RNA-induced silencing complex assembly in the Drosophila RNA interference pathway, J Biol Chem 280, 39278–39283.
    • (2005) J Biol Chem , vol.280 , pp. 39278-39283
    • Pham, J.W.1    Sontheimer, E.J.2
  • 26
    • 33746581711 scopus 로고    scopus 로고
    • Dicer-2 and R2D2 coordinately bind siRNA to promote assembly of the siRISC complexes
    • Liu, X., Jiang, F., Kalidas, S., Smith, D., and Liu, Q. (2006) Dicer-2 and R2D2 coordinately bind siRNA to promote assembly of the siRISC complexes, RNA 12, 1514–1520.
    • (2006) RNA , vol.12 , pp. 1514-1520
    • Liu, X.1    Jiang, F.2    Kalidas, S.3    Smith, D.4    Liu, Q.5
  • 28
    • 0642345790 scopus 로고    scopus 로고
    • Structure and conserved RNA binding of the PAZ domain
    • Yan, K. S., Yan, S., Farooq, A., Han, A., Zeng, L., and Zhou, M. M. (2003) Structure and conserved RNA binding of the PAZ domain, Nature 426, 468–474.
    • (2003) Nature , vol.426 , pp. 468-474
    • Yan, K.S.1    Yan, S.2    Farooq, A.3    Han, A.4    Zeng, L.5    Zhou, M.M.6
  • 29
    • 58749096360 scopus 로고    scopus 로고
    • On the road to reading the RNA-interference code
    • Siomi, H., and Siomi, M. C. (2009) On the road to reading the RNA-interference code, Nature 457, 396–404.
    • (2009) Nature , vol.457 , pp. 396-404
    • Siomi, H.1    Siomi, M.C.2
  • 30
    • 0142165224 scopus 로고    scopus 로고
    • Functional siRNAs and miRNAs exhibit strand bias
    • Khvorova, A., Reynolds, A., and Jayasena, S. D. (2003) Functional siRNAs and miRNAs exhibit strand bias, Cell 115, 209–216.
    • (2003) Cell , vol.115 , pp. 209-216
    • Khvorova, A.1    Reynolds, A.2    Jayasena, S.D.3
  • 31
    • 3142729150 scopus 로고    scopus 로고
    • Distinct roles for Argonaute proteins in small RNA-directed RNA cleavage pathways
    • Okamura, K., Ishizuka, A., Siomi, H., and Siomi, M. C. (2004) Distinct roles for Argonaute proteins in small RNA-directed RNA cleavage pathways, Genes Dev 18, 1655–1666.
    • (2004) Genes Dev , vol.18 , pp. 1655-1666
    • Okamura, K.1    Ishizuka, A.2    Siomi, H.3    Siomi, M.C.4
  • 32
    • 27744590896 scopus 로고    scopus 로고
    • Passenger-strand cleavage facilitates assembly of siRNA into Ago2-containing RNAi enzyme complexes
    • Matranga, C., Tomari, Y., Shin, C., Bartel, D. P., and Zamore, P. D. (2005) Passenger-strand cleavage facilitates assembly of siRNA into Ago2-containing RNAi enzyme complexes, Cell 123, 607–620.
    • (2005) Cell , vol.123 , pp. 607-620
    • Matranga, C.1    Tomari, Y.2    Shin, C.3    Bartel, D.P.4    Zamore, P.D.5
  • 33
    • 68449090733 scopus 로고    scopus 로고
    • C3PO, an endoribonuclease that promotes RNAi by facilitating RISC activation
    • Liu, Y., Ye, X., Jiang, F., Liang, C., Chen, D., Peng, J., Kinch, L. N., Grishin, N. V., and Liu, Q. (2009) C3PO, an endoribonuclease that promotes RNAi by facilitating RISC activation, Science 325, 750–753.
    • (2009) Science , vol.325 , pp. 750-753
    • Liu, Y.1    Ye, X.2    Jiang, F.3    Liang, C.4    Chen, D.5    Peng, J.6    Kinch, L.N.7    Grishin, N.V.8    Liu, Q.9
  • 34
    • 3042602447 scopus 로고    scopus 로고
    • Kinetic analysis of the RNAi enzyme complex
    • Haley, B., and Zamore, P. D. (2004) Kinetic analysis of the RNAi enzyme complex, Nat Struct Mol Biol 11, 599–606.
    • (2004) Nat Struct Mol Biol , vol.11 , pp. 599-606
    • Haley, B.1    Zamore, P.D.2
  • 36
    • 33751120715 scopus 로고    scopus 로고
    • The RNA silencing endonuclease Argonaute 2 mediates specific antiviral immunity in Drosophila melanogaster
    • van Rij, R. P., Saleh, M. C., Berry, B., Foo, C., Houk, A., Antoniewski, C., and Andino, R. (2006) The RNA silencing endonuclease Argonaute 2 mediates specific antiviral immunity in Drosophila melanogaster, Genes Dev 20, 2985–2995.
    • (2006) Genes Dev , vol.20 , pp. 2985-2995
    • van Rij, R.P.1    Saleh, M.C.2    Berry, B.3    Foo, C.4    Houk, A.5    Antoniewski, C.6    Andino, R.7
  • 38
    • 0038387645 scopus 로고    scopus 로고
    • In vitro analysis of RNA interference in Drosophila melanogaster
    • Haley, B., Tang, G., and Zamore, P. D. (2003) In vitro analysis of RNA interference in Drosophila melanogaster, Methods 30, 330–336.
    • (2003) Methods , vol.30 , pp. 330-336
    • Haley, B.1    Tang, G.2    Zamore, P.D.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.