-
1
-
-
0016355478
-
A new look at the statistical model identification
-
Akaike H. 1974. A new look at the statistical model identification. IEEE Trans Automat Contr. 19:716-723.
-
(1974)
IEEE Trans Automat Contr
, vol.19
, pp. 716-723
-
-
Akaike, H.1
-
2
-
-
17444424295
-
Serial SimCoal: A population genetics model for data from multiple populations and points in time
-
DOI 10.1093/bioinformatics/bti154
-
Anderson CNK, Ramakrishnan U, Chan YL, Hadly EA. 2005. Serial SimCoal: a population genetics model for data from multiple populations and points in time. Bioinformatics. 21:1733-1734. (Pubitemid 40542747)
-
(2005)
Bioinformatics
, vol.21
, Issue.8
, pp. 1733-1734
-
-
Anderson, C.N.K.1
Ramakrishnan, U.2
Chan, Y.L.3
Hadly, E.A.4
-
3
-
-
79955439952
-
Reconstructing concordance trees and testing the coalescent model from genome-wide data sets
-
Knowles LL, Kubatko LS, editors. Hoboken (NJ): Wiley-Blackwell
-
Ané C. 2010. Reconstructing concordance trees and testing the coalescent model from genome-wide data sets. In: Knowles LL, Kubatko LS, editors. Estimating species trees: practical and theoretical aspects. Hoboken (NJ): Wiley-Blackwell. pp. 35-52.
-
(2010)
Estimating Species Trees: Practical and Theoretical Aspects
, pp. 35-52
-
-
Ané, C.1
-
4
-
-
33846839390
-
Bayesian estimation of concordance among gene trees
-
DOI 10.1093/molbev/msl170
-
Ané C, Larget B, Baum DA, Smith SD, Rokas A. 2007. Bayesian estimation of concordance among gene trees. Mol Biol Evol. 24:412-426. (Pubitemid 46204374)
-
(2007)
Molecular Biology and Evolution
, vol.24
, Issue.2
, pp. 412-426
-
-
Ane, C.1
Larget, B.2
Baum, D.A.3
Smith, S.D.4
Rokas, A.5
-
5
-
-
15944396106
-
Missing the forest for the trees: Phylogenetic compression and its implications for inferring complex evolutionary histories
-
Ané C, Sanderson MJ. 2005. Missing the forest for the trees: phylogenetic compression and its implications for inferring complex evolutionary histories. Syst Biol. 54:146.
-
(2005)
Syst Biol
, vol.54
, pp. 146
-
-
Ané, C.1
Sanderson, M.J.2
-
6
-
-
33846839295
-
Concordance trees, concordance factors, and the exploration of reticulate genealogy
-
Baum DA. 2007. Concordance trees, concordance factors, and the exploration of reticulate genealogy. Taxon. 56:417-426. (Pubitemid 47025837)
-
(2007)
Taxon
, vol.56
, Issue.2
, pp. 417-426
-
-
Baum, D.A.1
-
7
-
-
57749113806
-
StepBrothers: Inferring partially shared ancestries among recombinant viral sequences
-
DOI 10.1093/biostatistics/kxn019
-
Bloomquist EW, Dorman KS, Suchard MA. 2009. StepBrothers: inferring partially shared ancestries among recombinant viral sequences. Biostatistics. 10:106-120. (Pubitemid 352847910)
-
(2009)
Biostatistics
, vol.10
, Issue.1
, pp. 106-120
-
-
Bloomquist, E.W.1
Dorman, K.S.2
Suchard, M.A.3
-
8
-
-
68149165460
-
A mixture model and a hidden markov model to simultaneously detect recombination breakpoints and reconstruct phylogenies
-
Boussau B, Gué guen L, Gouy M. 2009. A mixture model and a hidden markov model to simultaneously detect recombination breakpoints and reconstruct phylogenies. Evol Bioinform Online. 5:67-79.
-
(2009)
Evol Bioinform Online
, vol.5
, pp. 67-79
-
-
Boussau, B.1
Guéguen, L.2
Gouy, M.3
-
9
-
-
34249700809
-
Estimating species phylogeny from gene-tree probabilities despite incomplete lineage sorting: An example from melanoplus grasshoppers
-
DOI 10.1080/10635150701405560, PII 778979727
-
Carstens BC, Knowles LL. 2007. Estimating species phylogeny from gene-tree probabilities despite incomplete lineage sorting: an example from Melanoplus grasshoppers. Syst Biol. 56:400-411. (Pubitemid 46826903)
-
(2007)
Systematic Biology
, vol.56
, Issue.3
, pp. 400-411
-
-
Carstens, B.C.1
Knowles, L.L.2
-
10
-
-
33749613832
-
Detecting recombination in evolving nucleotide sequences
-
Chan C, Beiko R, Ragan M. 2006. Detecting recombination in evolving nucleotide sequences. BMC Bioinformatics. 7:412.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 412
-
-
Chan, C.1
Beiko, R.2
Ragan, M.3
-
11
-
-
50349088009
-
Phylogenetic detection of recombination with a Bayesian prior on the distance between trees
-
de Oliveira Martins L, Leal E, Kishino H. 2008. Phylogenetic detection of recombination with a Bayesian prior on the distance between trees. PLoS One. 3:e2651.
-
(2008)
PLoS One
, vol.3
-
-
De Oliveira Martins, L.1
Leal, E.2
Kishino, H.3
-
12
-
-
35348893207
-
Mapping human genetic ancestry
-
DOI 10.1093/molbev/msm156
-
Ebersberger I, et al. 2007. Mapping human genetic ancestry. Mol Biol Evol. 24:2266-2276. (Pubitemid 47574726)
-
(2007)
Molecular Biology and Evolution
, vol.24
, Issue.10
, pp. 2266-2276
-
-
Ebersberger, I.1
Galgoczy, P.2
Taudien, S.3
Taenzer, S.4
Platzer, M.5
Von Haeseler, A.6
-
13
-
-
84959798530
-
Cases in which parsimony or compatibility methods will be positively misleading
-
Felsenstein J. 1978. Cases in which parsimony or compatibility methods will be positively misleading. Syst Zool. 27:401-410.
-
(1978)
Syst Zool
, vol.27
, pp. 401-410
-
-
Felsenstein, J.1
-
14
-
-
38449096427
-
A model of horizontal gene transfer and the bacterial phylogeny problem
-
Galtier N. 2007. A model of horizontal gene transfer and the bacterial phylogeny problem. Syst Biol. 56:633-642.
-
(2007)
Syst Biol
, vol.56
, pp. 633-642
-
-
Galtier, N.1
-
15
-
-
0031041347
-
A likelihood method for the detection of selection and recombination using nucleotide sequences
-
Grassly N, Holmes E. 1997. A likelihood method for the detection of selection and recombination using nucleotide sequences. Mol Biol Evol. 14:239-247. (Pubitemid 27102670)
-
(1997)
Molecular Biology and Evolution
, vol.14
, Issue.3
, pp. 239-247
-
-
Grassly, N.C.1
Holmes, E.C.2
-
17
-
-
79960091789
-
Minimum description length model selection criteria for generalized linear models
-
Goldstein DR, editor. Beachwood (OH): Institute of Mathematical Statistics
-
Hansen MH, Yu B. 2003. Minimum description length model selection criteria for generalized linear models. In: Goldstein DR, editor. Statistics and science: A festschrift for terry speed. Beachwood (OH): Institute of Mathematical Statistics. pp. 145-163.
-
(2003)
Statistics and Science: A Festschrift for Terry Speed
, pp. 145-163
-
-
Hansen, M.H.1
Yu, B.2
-
18
-
-
0027471670
-
A heuristic method to reconstruct the history of sequences subject to recombination
-
Hein J. 1993. A heuristic method to reconstruct the history of sequences subject to recombination. J Mol Evol. 36:396-406.
-
(1993)
J Mol Evol
, vol.36
, pp. 396-406
-
-
Hein, J.1
-
20
-
-
45849120228
-
A Bayesian perspective on a non-parsimonious parsimony model
-
DOI 10.1080/10635150802166046, PII 794012413
-
Huelsenbeck JP, Ané C, Larget B, Ronquist F. 2008. A Bayesian perspective on a non-parsimonious parsimony model. Syst Biol. 57:406-419. (Pubitemid 351882204)
-
(2008)
Systematic Biology
, vol.57
, Issue.3
, pp. 406-419
-
-
Huelsenbeck, J.P.1
Ane, C.2
Larget, B.3
Ronquist, F.4
-
21
-
-
27544493059
-
Discriminating between rate heterogeneity and interspecific recombination in DNA sequence alignments with phylogenetic factorial hidden Markov models
-
DOI 10.1093/bioinformatics/bti1127
-
Husmeier D. 2005. Discriminating between rate heterogeneity and interspecific recombination in DNA sequence alignments with phylogenetic factorial hidden Markov models. Bioinformatics. 21:ii166-172. (Pubitemid 41535444)
-
(2005)
Bioinformatics
, vol.21
, Issue.SUPPL. 2
-
-
Husmeier, D.1
-
22
-
-
57349190314
-
Addressing the shortcomings of three recent Bayesian methods for detecting interspecific recombination in DNA sequence alignments
-
Husmeier D, Mantzaris AV. 2008. Addressing the shortcomings of three recent Bayesian methods for detecting interspecific recombination in DNA sequence alignments. Stat Appl Genet Mol Biol. 7:
-
(2008)
Stat Appl Genet Mol Biol
, vol.7
-
-
Husmeier, D.1
Mantzaris, A.V.2
-
23
-
-
0037358827
-
Detecting recombination in 4-taxa DNA sequence alignments with bayesian hidden markov models and Markov chain Monte Carlo
-
DOI 10.1093/molbev/msg039
-
Husmeier D, McGuire G. 2003. Detecting recombination in 4- axa DNA sequence alignments with Bayesian hidden Markov models and Markov Chain Monte Carlo. Mol Biol Evol. 20:315-337. (Pubitemid 36427167)
-
(2003)
Molecular Biology and Evolution
, vol.20
, Issue.3
, pp. 315-337
-
-
Husmeier, D.1
McGuire, G.2
-
24
-
-
37649007931
-
Analysis of 81 genes from 64 plastid genomes resolves relationships in angiosperms and identifies genome-scale evolutionary patterns
-
Jansen RK, et al. 2007. Analysis of 81 genes from 64 plastid genomes resolves relationships in angiosperms and identifies genome-scale evolutionary patterns. Proc Natl Acad Sci U S A. 104:19369-19374.
-
(2007)
Proc Natl Acad Sci U S A
, vol.104
, pp. 19369-19374
-
-
Jansen, R.K.1
-
25
-
-
70450233546
-
Estimating species trees: Methods of phylogenetic analysis when there is incongruence across genes
-
Knowles LL. 2009. Estimating species trees: methods of phylogenetic analysis when there is incongruence across genes. Syst Biol. 58:463-467.
-
(2009)
Syst Biol
, vol.58
, pp. 463-467
-
-
Knowles, L.L.1
-
27
-
-
77949525939
-
Long-branch attraction bias and inconsistency in Bayesian phylogenetics
-
Kolaczkowski B, Thornton JW. 2009. Long-branch attraction bias and inconsistency in Bayesian phylogenetics. PLoS One. 4:e7891.
-
(2009)
PLoS One
, vol.4
-
-
Kolaczkowski, B.1
Thornton, J.W.2
-
28
-
-
33748770095
-
Automated phylogenetic detection of recombination using a genetic algorithm
-
DOI 10.1093/molbev/msl051
-
Kosakovsky Pond SL, Posada D, Gravenor MB, Woelk CH, Frost SDW. 2006a. Automated phylogenetic detection of recombination using a genetic algorithm. Mol Biol Evol. 23:1891-1901. (Pubitemid 44412875)
-
(2006)
Molecular Biology and Evolution
, vol.23
, Issue.10
, pp. 1891-1901
-
-
Pond, S.L.K.1
Posada, D.2
Gravenor, M.B.3
Woelk, C.H.4
Frost, S.D.W.5
-
29
-
-
33845361366
-
GARD: A genetic algorithm for recombination detection
-
DOI 10.1093/bioinformatics/btl474
-
Kosakovsky Pond SL, Posada D, Gravenor MB, Woelk CH, Frost SDW. 2006b. GARD: a genetic algorithm for recombination detection.Bioinformatics. 22:3096-3098. (Pubitemid 44884087)
-
(2006)
Bioinformatics
, vol.22
, Issue.24
, pp. 3096-3098
-
-
Kosakovsky Pond, S.L.1
Posada, D.2
Gravenor, M.B.3
Woelk, C.H.4
Frost, S.D.W.5
-
30
-
-
78149256307
-
BUCKy: Gene tree/ species tree reconciliation with Bayesian concordance analysis
-
Larget BR, Kotha SK, Dewey CN, Ané C. 2010. BUCKy: gene tree/ species tree reconciliation with Bayesian concordance analysis. Bioinformatics. 26:2910-2911.
-
(2010)
Bioinformatics
, vol.26
, pp. 2910-2911
-
-
Larget, B.R.1
Kotha, S.K.2
Dewey, C.N.3
Ané, C.4
-
31
-
-
34248159030
-
Suppression of long-branch attraction artefacts in the animal phylogeny using a site-heterogeneous model
-
Lartillot N, Brinkmann H, Philippe H. 2007. Suppression of long-branch attraction artefacts in the animal phylogeny using a site-heterogeneous model. BMC Evol Biol. 7(Suppl 4):S4.
-
(2007)
BMC Evol Biol
, vol.7
, Issue.SUPPL. 4
-
-
Lartillot, N.1
Brinkmann, H.2
Philippe, H.3
-
32
-
-
0031504952
-
Gene trees in species trees
-
Maddison WP. 1997. Gene trees in species trees. Syst Biol. 46:523-536.
-
(1997)
Syst Biol
, vol.46
, pp. 523-536
-
-
Maddison, W.P.1
-
33
-
-
33644606488
-
Inferring phylogeny despite incomplete lineage sorting
-
Maddison WP, Knowles LL. 2006. Inferring phylogeny despite incomplete lineage sorting. Syst Biol. 55:21-30.
-
(2006)
Syst Biol
, vol.55
, pp. 21-30
-
-
Maddison, W.P.1
Knowles, L.L.2
-
34
-
-
38449104891
-
Phylogenetic mixtures on a single tree can mimic a tree of another topology
-
Matsen FA, Steel M. 2007. Phylogenetic mixtures on a single tree can mimic a tree of another topology. Syst Biol. 56:767-775.
-
(2007)
Syst Biol
, vol.56
, pp. 767-775
-
-
Matsen, F.A.1
Steel, M.2
-
35
-
-
33646154660
-
Recco: Recombination analysis using cost optimization
-
Maydt J, Lengauer T. 2006. Recco: recombination analysis using cost optimization. Bioinformatics. 22:1064-1071.
-
(2006)
Bioinformatics
, vol.22
, pp. 1064-1071
-
-
Maydt, J.1
Lengauer, T.2
-
36
-
-
0034097468
-
TOPAL 2.0: Improved detection of mosaic sequences within multiple alignments
-
McGuire G, Wright F. 2000. TOPAL 2.0: improved detection of mosaic sequences within multiple alignments. Bioinformatics. 16:130-134. (Pubitemid 30248589)
-
(2000)
Bioinformatics
, vol.16
, Issue.2
, pp. 130-134
-
-
McGuire, G.1
Wright, F.2
-
37
-
-
21444455535
-
Dual multiple change-point model leads to more accurate recombination detection
-
DOI 10.1093/bioinformatics/bti459
-
Minin VN, Dorman KS, Fang F, Suchard MA. 2005. Dual multiple change-point model leads to more accurate recombination detection. Bioinformatics. 21:3034-3042. (Pubitemid 40916429)
-
(2005)
Bioinformatics
, vol.21
, Issue.13
, pp. 3034-3042
-
-
Minin, V.N.1
Dorman, K.S.2
Fang, F.3
Suchard, M.A.4
-
38
-
-
44149123106
-
An information-theoretic method for the treatment of plural ancestry in phylogenetics
-
Munshaw S, Kepler TB. 2008. An information-theoretic method for the treatment of plural ancestry in phylogenetics. Mol Biol Evol. 25:1199-1208.
-
(2008)
Mol Biol Evol
, vol.25
, pp. 1199-1208
-
-
Munshaw, S.1
Kepler, T.B.2
-
39
-
-
0031774059
-
GeneTree: Comparing gene and species phylogenies using reconciled trees
-
Page RD. 1998. GeneTree: comparing gene and species phylogenies using reconciled trees. Bioinformatics. 14:819-820. (Pubitemid 28552117)
-
(1998)
Bioinformatics
, vol.14
, Issue.9
, pp. 819-820
-
-
Page, R.D.M.1
-
40
-
-
57149106289
-
Modelling heterotachy in phylogenetic inference by reversible-jump Markov chain Monte Carlo
-
Pagel M, Meade A. 2008. Modelling heterotachy in phylogenetic inference by reversible-jump Markov chain Monte Carlo. Philos Trans R Soc Lond B Biol Sci. 363:3955-3964.
-
(2008)
Philos Trans R Soc Lond B Biol Sci
, vol.363
, pp. 3955-3964
-
-
Pagel, M.1
Meade, A.2
-
41
-
-
27744488568
-
Heterotachy and long-branch attraction in phylogenetics
-
Philippe H, Zhou Y, Brinkmann H, Rodrigue N, Delsuc F. 2005. Heterotachy and long-branch attraction in phylogenetics. BMC Evol Biol. 5:50.
-
(2005)
BMC Evol Biol
, vol.5
, pp. 50
-
-
Philippe, H.1
Zhou, Y.2
Brinkmann, H.3
Rodrigue, N.4
Delsuc, F.5
-
42
-
-
33750437728
-
Widespread discordance of gene trees with species tree in Drosophila: Evidence for incomplete lineage sorting
-
Pollard D, Iyer VN, Moses AM, Eisen MB. 2006. Widespread discordance of gene trees with species tree in Drosophila: evidence for incomplete lineage sorting. PLoS Genet. 2:e173.
-
(2006)
PLoS Genet
, vol.2
-
-
Pollard, D.1
Iyer, V.N.2
Moses, A.M.3
Eisen, M.B.4
-
44
-
-
68149093715
-
Search for a "tree of Life" in the thicket of the phylogenetic forest
-
Puigbo P, Wolf Y, Koonin E. 2009. Search for a "Tree of Life" in the thicket of the phylogenetic forest. J Biol. 8:59.
-
(2009)
J Biol
, vol.8
, pp. 59
-
-
Puigbo, P.1
Wolf, Y.2
Koonin, E.3
-
45
-
-
0018015137
-
Modeling by shortest data description
-
Rissanen J. 1978. Modeling by shortest data description. Automatica. 14:465-471.
-
(1978)
Automatica
, vol.14
, pp. 465-471
-
-
Rissanen, J.1
-
46
-
-
0019424782
-
Comparison of phylogenetic trees
-
DOI 10.1016/0025-5564(81)90043-2
-
Robinson DR, Foulds LR. 1981. Comparison of phylogenetic trees. Math Biosci. 53:131-147. (Pubitemid 11129084)
-
(1981)
Mathematical Biosciences
, vol.53
, Issue.1-2
, pp. 131-147
-
-
Robinson, D.F.1
Foulds, L.R.2
-
47
-
-
84857002599
-
RECOMP: A parsimony-based method for detecting recombination
-
2006 Feb 13-16; Taipei, Taiwan. London: Imperial College Press
-
Ruths D, Nakhleh L. 2006. RECOMP: a parsimony-based method for detecting recombination. Proceedings of the 4th Asia Pacific Bioinformatics Conference; 2006 Feb 13-16; Taipei, Taiwan. London: Imperial College Press.
-
(2006)
Proceedings of the 4th Asia Pacific Bioinformatics Conference
-
-
Ruths, D.1
Nakhleh, L.2
-
48
-
-
42149108463
-
Whole-genome comparison of disease and carriage strains provides insights into virulence evolution in Neisseria meningitidis
-
DOI 10.1073/pnas.0800151105
-
Schoen C, et al. 2008. Whole-genome comparison of disease and carriage strains provides insights into virulence evolution in Neisseria meningitidis. Proc Natl Acad Sci U S A. 105:3473-3478. (Pubitemid 351723577)
-
(2008)
Proceedings of the National Academy of Sciences of the United States of America
, vol.105
, Issue.9
, pp. 3473-3478
-
-
Schoen, C.1
Blom, J.2
Claus, H.3
Schramm-Gluck, A.4
Brandt, P.5
Muller, T.6
Goesmann, A.7
Joseph, B.8
Konietzny, S.9
Kurzai, O.10
Schmitt, C.11
Friedrich, T.12
Linke, B.13
Vogel, U.14
Frosch, M.15
-
49
-
-
0000120766
-
Estimating the dimension of a model
-
Schwarz G. 1978. Estimating the dimension of a model. Ann Statist. 6:461-464.
-
(1978)
Ann Statist
, vol.6
, pp. 461-464
-
-
Schwarz, G.1
-
50
-
-
33645234370
-
The concordance of gene trees and species trees at two linked loci
-
Slatkin M, Pollack JL. 2006. The concordance of gene trees and species trees at two linked loci. Genetics. 172:1979-1984.
-
(2006)
Genetics
, vol.172
, pp. 1979-1984
-
-
Slatkin, M.1
Pollack, J.L.2
-
51
-
-
79952174584
-
Can we avoid "sIN" in the house of "no CommonMechanism"?
-
Steel M. 2010. Can we avoid "SIN" in the house of "No CommonMechanism"? Syst Biol. 60(1):96-109.
-
(2010)
Syst Biol
, vol.60
, Issue.1
, pp. 96-109
-
-
Steel, M.1
-
52
-
-
0242404116
-
Hierarchical phylogenetic models for analyzing multipartite sequence data
-
DOI 10.1080/10635150390238879
-
Suchard MA, Kitchen CMR, Sinsheimer JS, Weiss RE. 2003. Hierarchicalphylogenetic models for analyzing multipartite sequence data. Syst Biol. 52:649-664. (Pubitemid 37365046)
-
(2003)
Systematic Biology
, vol.52
, Issue.5
, pp. 649-664
-
-
Suchard, M.A.1
Kitchen, C.M.R.2
Sinsheimer, J.S.3
Weiss, R.E.4
-
53
-
-
0042243482
-
Inferring spatial phylogenetic variation along nucleotide sequences: A multiple changepoint model
-
DOI 10.1198/016214503000215
-
Suchard MA, Weiss RE, Dorman KS, Sinsheimer JS. 2003. Inferring spatial phylogenetic variation along nucleotide sequences: a multiple changepoint model. J Am Stat Assoc. 98:427-437. (Pubitemid 36931566)
-
(2003)
Journal of the American Statistical Association
, vol.98
, Issue.462
, pp. 427-437
-
-
Suchard, M.A.1
Weiss, R.E.2
Dorman, K.S.3
Sinsheimer, J.S.4
-
55
-
-
0031149251
-
Links between maximum likelihood and maximum parsimony under a simple model of site substitution
-
Tuffley C, Steel M. 1997. Links between maximum likelihood and maximum parsimony under a simple model of site substitution. Bull Math Biol. 59:581-607. (Pubitemid 27208833)
-
(1997)
Bulletin of Mathematical Biology
, vol.59
, Issue.3
, pp. 581-607
-
-
Tuffley, C.1
Steel, M.2
-
56
-
-
57349156628
-
Phylogenetic inference under recombination using Bayesian stochastic topology selection
-
Webb A, Hancock JM, Holmes CC. 2009. Phylogenetic inference under recombination using Bayesian stochastic topology selection. Bioinformatics. 25:197-203.
-
(2009)
Bioinformatics
, vol.25
, pp. 197-203
-
-
Webb, A.1
Hancock, J.M.2
Holmes, C.C.3
-
57
-
-
46249126320
-
DupTree: A program for large-scale phylogenetic analyses using gene tree parsimony
-
DOI 10.1093/bioinformatics/btn230
-
Wehe A, Bansal MS, Burleigh JG, Eulenstein O. 2008. DupTree: a program for large-scale phylogenetic analyses using gene tree parsimony. Bioinformatics. 24:1540-1541. (Pubitemid 351911710)
-
(2008)
Bioinformatics
, vol.24
, Issue.13
, pp. 1540-1541
-
-
Wehe, A.1
Bansal, M.S.2
Burleigh, J.G.3
Eulenstein, O.4
-
58
-
-
47649095950
-
Spatial and temporal heterogeneity in nucleotide sequence evolution
-
DOI 10.1093/molbev/msn119
-
Whelan S. 2008. Spatial and temporal heterogeneity in nucleotide sequence evolution. Mol Biol Evol. 25:1683-1694. (Pubitemid 352019854)
-
(2008)
Molecular Biology and Evolution
, vol.25
, Issue.8
, pp. 1683-1694
-
-
Whelan, S.1
-
59
-
-
73649129187
-
Fine scale phylogenetic discordance across the house mouse genome
-
White MA, Ané C, Dewey CN, Larget BR, Payseur BA. 2009. Fine scale phylogenetic discordance across the house mouse genome. PLoS Genet. 5:e1000729.
-
(2009)
PLoS Genet
, vol.5
-
-
White, M.A.1
Ané, C.2
Dewey, C.N.3
Larget, B.R.4
Payseur, B.A.5
-
60
-
-
77951062024
-
Phylogeny of gammaproteobacteria
-
Williams KP, et al. 2010. Phylogeny of gammaproteobacteria. J Bacteriol. 192:2305-2314.
-
(2010)
J Bacteriol
, vol.192
, pp. 2305-2314
-
-
Williams, K.P.1
-
61
-
-
34548348147
-
On the subspecific origin of the laboratory mouse
-
DOI 10.1038/ng2087, PII NG2087
-
Yang H, Bell TA, Churchill GA, Pardo-Manuel de Villena F. 2007. On the subspecific origin of the laboratory mouse. Nat Genet. 39:1100-1107. (Pubitemid 47340646)
-
(2007)
Nature Genetics
, vol.39
, Issue.9
, pp. 1100-1107
-
-
Yang, H.1
Bell, T.A.2
Churchill, G.A.3
Pardo-Manuel De Villena, F.4
-
62
-
-
0028064845
-
Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: Approximate methods
-
Yang ZT. 1994. Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: approximate methods. J Mol Evol. 39:306-314.
-
(1994)
J Mol Evol
, vol.39
, pp. 306-314
-
-
Yang, Z.T.1
-
63
-
-
74549146721
-
A Dirichlet process covarion mixture model and its assessments using posterior predictive discrepancy tests
-
Zhou Y, Brinkmann H, Rodrigue N, Lartillot N, Philippe H. 2010. A Dirichlet process covarion mixture model and its assessments using posterior predictive discrepancy tests. Mol Biol Evol. 27:371-384.
-
(2010)
Mol Biol Evol
, vol.27
, pp. 371-384
-
-
Zhou, Y.1
Brinkmann, H.2
Rodrigue, N.3
Lartillot, N.4
Philippe, H.5
|