-
1
-
-
55249096894
-
Comprehensive mass-spectrometry-based proteome quantification of haploid versus diploid yeast
-
de Godoy, L. M. F.; Olsen, J. V.; Cox, J.; Nielsen, M. L.; Hubner, N. C.; Frohlich, F.; Walther, T. C.; Mann, M. Comprehensive mass-spectrometry-based proteome quantification of haploid versus diploid yeast Nature 2008, 455 (7217) 1251-U60
-
(2008)
Nature
, vol.455
, Issue.7217
-
-
De Godoy, L.M.F.1
Olsen, J.V.2
Cox, J.3
Nielsen, M.L.4
Hubner, N.C.5
Frohlich, F.6
Walther, T.C.7
Mann, M.8
-
2
-
-
0029020259
-
2-Dimensional electrophoresis of proteins - An updated protocol and implications for a functional-analysis of the genome
-
Klose, J.; Kobalz, U. 2-Dimensional electrophoresis of proteins - An updated protocol and implications for a functional-analysis of the genome Electrophoresis 1995, 16 (6) 1034-1059
-
(1995)
Electrophoresis
, vol.16
, Issue.6
, pp. 1034-1059
-
-
Klose, J.1
Kobalz, U.2
-
3
-
-
0031568420
-
Direct analysis and identification of proteins in mixtures by LC/MS/MS and database searching at the low-femtomole level
-
McCormack, A. L.; Schieltz, D. M.; Goode, B.; Yang, S.; Barnes, G.; Drubin, D.; Yates, J. R. Direct analysis and identification of proteins in mixtures by LC/MS/MS and database searching at the low-femtomole level Anal. Chem. 1997, 69 (4) 767-776
-
(1997)
Anal. Chem.
, vol.69
, Issue.4
, pp. 767-776
-
-
McCormack, A.L.1
Schieltz, D.M.2
Goode, B.3
Yang, S.4
Barnes, G.5
Drubin, D.6
Yates, J.R.7
-
4
-
-
33645993265
-
Global survey of organ and organelle protein expression in mouse: Combined proteomic and transcriptomic profiling
-
Kislinger, T.; Cox, B.; Kannan, A.; Chung, C.; Hu, P. Z.; Ignatchenko, A.; Scott, M. S.; Gramolini, A. O.; Morris, Q.; Hallett, M. T.; Rossant, J.; Hughes, T. R.; Frey, B.; Emili, A. Global survey of organ and organelle protein expression in mouse: Combined proteomic and transcriptomic profiling Cell 2006, 125 (1) 173-186
-
(2006)
Cell
, vol.125
, Issue.1
, pp. 173-186
-
-
Kislinger, T.1
Cox, B.2
Kannan, A.3
Chung, C.4
Hu, P.Z.5
Ignatchenko, A.6
Scott, M.S.7
Gramolini, A.O.8
Morris, Q.9
Hallett, M.T.10
Rossant, J.11
Hughes, T.R.12
Frey, B.13
Emili, A.14
-
5
-
-
79960016960
-
Non-labeling liquid chromatography-mass spectrometry-based quantitative proteomics
-
Li, X.; Yi, E.; Zhang, H.; Aebersold, R. Non-labeling liquid chromatography-mass spectrometry-based quantitative proteomics Mol. Cell. Proteomics 2005, 4 (8) S324-S324
-
(2005)
Mol. Cell. Proteomics
, vol.4
, Issue.8
-
-
Li, X.1
Yi, E.2
Zhang, H.3
Aebersold, R.4
-
6
-
-
27644543078
-
Comparison of label-free methods for quantifying human proteins by shotgun proteomics
-
DOI 10.1074/mcp.M500084-MCP200
-
Old, W. M.; Meyer-Arendt, K.; Aveline-Wolf, L.; Pierce, K. G.; Mendoza, A.; Sevinsky, J. R.; Resing, K. A.; Ahn, N. G. Comparison of label-free methods for quantifying human proteins by shotgun proteomics Mol. Cell. Proteomics 2005, 4 (10) 1487-1502 (Pubitemid 41555475)
-
(2005)
Molecular and Cellular Proteomics
, vol.4
, Issue.10
, pp. 1487-1502
-
-
Old, W.M.1
Meyer-Arendt, K.2
Aveline-Wolf, L.3
Pierce, K.G.4
Mendoza, A.5
Sevinsky, J.R.6
Resing, K.A.7
Ahn, N.G.8
-
7
-
-
33746285299
-
Label-free quantitative proteomics using large peptide data sets generated by nanoflow liquid chromatography and mass spectromery
-
DOI 10.1074/mcp.T500039-MCP200
-
Ono, M.; Shitashige, M.; Honda, K.; Isobe, T.; Kuwabara, H.; Matsuzuki, H.; Hirohashi, S.; Yamada, T. Label-free quantitative proteomics using large peptide data sets generated by nanoflow liquid chromatography and mass spectrometry Mol. Cell. Proteomics 2006, 5 (7) 1338-1347 (Pubitemid 44103403)
-
(2006)
Molecular and Cellular Proteomics
, vol.5
, Issue.7
, pp. 1338-1347
-
-
Ono, M.1
Shitashige, M.2
Honda, K.3
Isobe, T.4
Kuwabara, H.5
Matsuzuki, H.6
Hirohashi, S.7
Yamada, T.8
-
8
-
-
33646742561
-
Quantitative proteome analysis of breast cancer cell lines using O-18-labeling and an accurate mass and time tag strategy
-
Patwardhan, A. J.; Strittmatter, E. F.; David, G. C.; Smith, R. D.; Pallavicini, M. G. Quantitative proteome analysis of breast cancer cell lines using O-18-labeling and an accurate mass and time tag strategy Proteomics 2006, 6 (9) 2903-2915
-
(2006)
Proteomics
, vol.6
, Issue.9
, pp. 2903-2915
-
-
Patwardhan, A.J.1
Strittmatter, E.F.2
David, G.C.3
Smith, R.D.4
Pallavicini, M.G.5
-
9
-
-
6044226889
-
Differential mass spectrometry: A label-free LC-MS method for finding significant differences in complex peptide and protein mixtures
-
DOI 10.1021/ac0493875
-
Wiener, M. C.; Sachs, J. R.; Deyanova, E. G.; Yates, N. A. Differential mass spectrometry: A label-free LC-MS method for finding significant differences in complex peptide and protein mixtures Anal. Chem. 2004, 76 (20) 6085-6096 (Pubitemid 39382956)
-
(2004)
Analytical Chemistry
, vol.76
, Issue.20
, pp. 6085-6096
-
-
Wiener, M.C.1
Sachs, J.R.2
Deyanova, E.G.3
Yates, N.A.4
-
10
-
-
20144383119
-
High throughput quantitative analysis of serum proteins using glycopeptide capture and liquid chromatography mass spectrometry
-
DOI 10.1074/mcp.M400090-MCP200
-
Zhang, H.; Yi, E. C.; Li, X. J.; Mallick, P.; Kelly-Spratt, K. S.; Masselon, C. D.; Camp, D. G.; Smith, R. D.; Kemp, C. J.; Aebersold, R. High throughput quantitative analysis of serum proteins using glycopeptide capture and liquid chromatography mass spectrometry Mol. Cell. Proteomics 2005, 4 (2) 144-155 (Pubitemid 40361177)
-
(2005)
Molecular and Cellular Proteomics
, vol.4
, Issue.2
, pp. 144-155
-
-
Zhang, H.1
Yi, E.C.2
Li, X.-J.3
Mallick, P.4
Kelly-Spratt, K.S.5
Masselon, C.D.6
Camp II, D.G.7
Smith, R.D.8
Kemp, C.J.9
Aebersold, R.10
-
11
-
-
57449099865
-
MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification
-
Cox, J.; Mann, M. MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification Nat. Biotechnol. 2008, 26 (12) 1367-1372
-
(2008)
Nat. Biotechnol.
, vol.26
, Issue.12
, pp. 1367-1372
-
-
Cox, J.1
Mann, M.2
-
12
-
-
27644555055
-
Interpretation of shotgun proteomic data: The protein inference problem
-
DOI 10.1074/mcp.R500012-MCP200
-
Nesvizhskii, A. I.; Aebersold, R. Interpretation of shotgun proteomic data - The protein inference problem Mol. Cell. Proteomics 2005, 4 (10) 1419-1440 (Pubitemid 41555469)
-
(2005)
Molecular and Cellular Proteomics
, vol.4
, Issue.10
, pp. 1419-1440
-
-
Nesvizhskii, A.I.1
Aebersold, R.2
-
13
-
-
52549133856
-
A rapid approach for phenotype-screening and database independent detection of cSNP/protein polymorphism using mass accuracy precursor alignment
-
Hoehenwarter, W.; van Dongen, J. T.; Wienkoop, S.; Steinfath, M.; Humme, J.; Erban, A.; Sulpice, R.; Regierer, B.; Kopka, J.; Geigenberger, P.; Weckwerth, W. A rapid approach for phenotype-screening and database independent detection of cSNP/protein polymorphism using mass accuracy precursor alignment Proteomics 2008, 8 (20) 4214-4225
-
(2008)
Proteomics
, vol.8
, Issue.20
, pp. 4214-4225
-
-
Hoehenwarter, W.1
Van Dongen, J.T.2
Wienkoop, S.3
Steinfath, M.4
Humme, J.5
Erban, A.6
Sulpice, R.7
Regierer, B.8
Kopka, J.9
Geigenberger, P.10
Weckwerth, W.11
-
14
-
-
0033434080
-
Probability-based protein identification by searching sequence databases using mass spectrometry data
-
Perkins, D. N.; Pappin, D. J. C.; Creasy, D. M.; Cottrell, J. S. Probability-based protein identification by searching sequence databases using mass spectrometry data Electrophoresis 1999, 20 (18) 3551-3567 (Pubitemid 30007252)
-
(1999)
Electrophoresis
, vol.20
, Issue.18
, pp. 3551-3567
-
-
Perkins, D.N.1
Pappin, D.J.C.2
Creasy, D.M.3
Cottrell, J.S.4
-
15
-
-
28644447919
-
Identification of post-translational modifications by blind search of mass spectra
-
DOI 10.1038/nbt1168
-
Tsur, D.; Tanner, S.; Zandi, E.; Bafna, V.; Pevzner, P. A. Identification of post-translational modifications by blind search of mass spectra Nat. Biotechnol. 2005, 23 (12) 1562-1567 (Pubitemid 41752935)
-
(2005)
Nature Biotechnology
, vol.23
, Issue.12
, pp. 1562-1567
-
-
Tsur, D.1
Tanner, S.2
Zandi, E.3
Bafna, V.4
Pevzner, P.A.5
-
16
-
-
60849119837
-
CMA - A comprehensive Bioconductor package for supervised classification with high dimensional data
-
Slawski, M.; Daumer, M.; Boulesteix, A. L. CMA - a comprehensive Bioconductor package for supervised classification with high dimensional data BMC Bioinf. 2008, 9, 439
-
(2008)
BMC Bioinf.
, vol.9
, pp. 439
-
-
Slawski, M.1
Daumer, M.2
Boulesteix, A.L.3
-
17
-
-
0037311919
-
TM4: A free, open-source system for microarray data management and analysis
-
Saeed, A. I.; Sharov, V.; White, J.; Li, J.; Liang, W.; Bhagabati, N.; Braisted, J.; Klapa, M.; Currier, T.; Thiagarajan, M.; Sturn, A.; Snuffin, M.; Rezantsev, A.; Popov, D.; Ryltsov, A.; Kostukovich, E.; Borisovsky, I.; Liu, Z.; Vinsavich, A.; Trush, V.; Quackenbush, J. TM4: A free, open-source system for microarray data management and analysis BioTechniques 2003, 34 (2) 374-+
-
(2003)
BioTechniques
, vol.34
, Issue.2
-
-
Saeed, A.I.1
Sharov, V.2
White, J.3
Li, J.4
Liang, W.5
Bhagabati, N.6
Braisted, J.7
Klapa, M.8
Currier, T.9
Thiagarajan, M.10
Sturn, A.11
Snuffin, M.12
Rezantsev, A.13
Popov, D.14
Ryltsov, A.15
Kostukovich, E.16
Borisovsky, I.17
Liu, Z.18
Vinsavich, A.19
Trush, V.20
Quackenbush, J.21
more..
-
18
-
-
0344464731
-
MetaGeneAlyse: Analysis of integrated transcriptional and metabolite data
-
DOI 10.1093/bioinformatics/btg321
-
Daub, C. O.; Kloska, S.; Selbig, J. MetaGeneAlyse: analysis of integrated transcriptional and metabolite data Bioinformatics 2003, 19 (17) 2332-2333 (Pubitemid 37483997)
-
(2003)
Bioinformatics
, vol.19
, Issue.17
, pp. 2332-2333
-
-
Daub, C.O.1
Kloska, S.2
Selbig, J.3
-
19
-
-
0036161259
-
Gene selection for cancer classification using support vector machines
-
DOI 10.1023/A:1012487302797
-
Guyon, I.; Weston, J.; Barnhill, S.; Vapnik, V. Gene selection for cancer classification using support vector machines Mach Learn 2002, 46 (1-3) 389-422 (Pubitemid 34129977)
-
(2002)
Machine Learning
, vol.46
, Issue.1-3
, pp. 389-422
-
-
Guyon, I.1
Weston, J.2
Barnhill, S.3
Vapnik, V.4
-
20
-
-
0036141951
-
Finding genes in the C2C12 osteogenic pathway by k-nearest-neighbor classification of expression data
-
DOI 10.1101/gr.182601
-
Theilhaber, J.; Connolly, T.; Roman-Roman, S.; Bushnell, S.; Jackson, A.; Call, K.; Garcia, T.; Baron, R. Finding genes in the C2C12 osteogenic pathway by k-nearest-neighbor classification of expression data Genome Res. 2002, 12 (1) 165-176 (Pubitemid 34065600)
-
(2002)
Genome Research
, vol.12
, Issue.1
, pp. 165-176
-
-
Theilhaber, J.1
Connolly, T.2
Roman-Roman, S.3
Bushnell, S.4
Jackson, A.5
Call, K.6
Garcia, T.7
Baron, R.8
-
21
-
-
0035478854
-
Random forests
-
DOI 10.1023/A:1010933404324
-
Breiman, L. Random forests Mach. Learn. 2001, 45 (1) 5-32 (Pubitemid 32933532)
-
(2001)
Machine Learning
, vol.45
, Issue.1
, pp. 5-32
-
-
Breiman, L.1
-
22
-
-
0033565832
-
Role of accurate mass measurement (±10 ppm) in protein identification strategies employing MS or MS/MS and database searching
-
DOI 10.1021/ac9810516
-
Clauser, K. R.; Baker, P.; Burlingame, A. L. Role of accurate mass measurement (± 10 ppm) in protein identification strategies employing MS or MS MS and database searching Anal. Chem. 1999, 71 (14) 2871-2882 (Pubitemid 29340480)
-
(1999)
Analytical Chemistry
, vol.71
, Issue.14
, pp. 2871-2882
-
-
Clauser, K.R.1
Baker, P.2
Burlingame, A.L.3
-
23
-
-
2742576125
-
Accuracy requirements for peptide characterization by monoisotopic molecular mass measurements
-
Zubarev, R. A.; Hakansson, P.; Sundqvist, B. Accuracy requirements for peptide characterization by monoisotopic molecular mass measurements Anal. Chem. 1996, 68 (22) 4060-4063
-
(1996)
Anal. Chem.
, vol.68
, Issue.22
, pp. 4060-4063
-
-
Zubarev, R.A.1
Hakansson, P.2
Sundqvist, B.3
-
24
-
-
3242731195
-
A model for random sampling and estimation of relative protein abundance in shotgun proteomics
-
DOI 10.1021/ac0498563
-
Liu, H. B.; Sadygov, R. G.; Yates, J. R. A model for random sampling and estimation of relative protein abundance in shotgun proteomics Anal. Chem. 2004, 76 (14) 4193-4201 (Pubitemid 38943698)
-
(2004)
Analytical Chemistry
, vol.76
, Issue.14
, pp. 4193-4201
-
-
Liu, H.1
Sadygov, R.G.2
Yates III, J.R.3
-
25
-
-
33846129045
-
Stable isotope-free quantitative shotgun proteomics comined with sample pattern recognition for rapid diagnostics
-
DOI 10.1002/jssc.200600290
-
Wienkoop, S.; Larrainzar, E.; Niemann, M.; Gonzalez, E. M.; Lehmann, U.; Weckwerth, W. Stable isotope-free quantitative shotgun proteomics combined with sample pattern recognition for rapid diagnostics J. Sep. Sci. 2006, 29 (18) 2793-2801 (Pubitemid 46075518)
-
(2006)
Journal of Separation Science
, vol.29
, Issue.18
, pp. 2793-2801
-
-
Wienkoop, S.1
Larrainzar, E.2
Niemann, M.3
Gonzalez, E.M.4
Lehmann, U.5
Weckwerth, W.6
-
26
-
-
77956429710
-
Discovering plant metabolic biomarkers for phenotype prediction using an untargeted approach
-
Steinfath, M.; Strehmel, N.; Peters, R.; Schauer, N.; Groth, D.; Hummel, J.; Steup, M.; Selbig, J.; Kopka, J.; Geigenberger, P.; van Dongen, J. T. Discovering plant metabolic biomarkers for phenotype prediction using an untargeted approach Plant Biotechnol. J. 2010, 8 (8) 900-911
-
(2010)
Plant Biotechnol. J.
, vol.8
, Issue.8
, pp. 900-911
-
-
Steinfath, M.1
Strehmel, N.2
Peters, R.3
Schauer, N.4
Groth, D.5
Hummel, J.6
Steup, M.7
Selbig, J.8
Kopka, J.9
Geigenberger, P.10
Van Dongen, J.T.11
-
27
-
-
31644446949
-
E: A virtue of parallel MS acquisition
-
DOI 10.1074/mcp.M500230-MCP200
-
Silva, J. C.; Gorenstein, M. V.; Li, G. Z.; Vissers, J. P. C.; Geromanos, S. J. Absolute quantification of proteins by LCMSE-A virtue of parallel MS acquisition Mol. Cell. Proteomics 2006, 5 (1) 144-156 (Pubitemid 43169347)
-
(2006)
Molecular and Cellular Proteomics
, vol.5
, Issue.1
, pp. 144-156
-
-
Silva, J.C.1
Gorenstein, M.V.2
Li, G.-Z.3
Vissers, J.P.C.4
Geromanos, S.J.5
-
28
-
-
24044513966
-
Comparative evaluation of mass spectrometry platforms used in large-scale proteomics investigations
-
DOI 10.1038/nmeth785
-
Elias, J. E.; Haas, W.; Faherty, B. K.; Gygi, S. P. Comparative evaluation of mass spectrometry platforms used in large-scale proteomics investigations Nat. Methods 2005, 2 (9) 667-675 (Pubitemid 41223093)
-
(2005)
Nature Methods
, vol.2
, Issue.9
, pp. 667-675
-
-
Elias, J.E.1
Haas, W.2
Faherty, B.K.3
Gygi, S.P.4
-
29
-
-
3042815334
-
Trypsin cleaves exclusively C-terminal to arginine and lysine residues
-
DOI 10.1074/mcp.T400003-MCP200
-
Olsen, J. V.; Ong, S. E.; Mann, M. Trypsin cleaves exclusively C-terminal to arginine and lysine residues Mol. Cell. Proteomics 2004, 3 (6) 608-614 (Pubitemid 38878520)
-
(2004)
Molecular and Cellular Proteomics
, vol.3
, Issue.6
, pp. 608-614
-
-
Olsen, J.V.1
Ong, S.-E.2
Mann, M.3
-
30
-
-
34147173417
-
On the proper use of mass accuracy in proteomics
-
DOI 10.1074/mcp.M600380-MCP200
-
Zubarev, R.; Mann, M. On the proper use of mass accuracy in proteomics Mol. Cell. Proteomics 2007, 6 (3) 377-381 (Pubitemid 46554535)
-
(2007)
Molecular and Cellular Proteomics
, vol.6
, Issue.3
, pp. 377-381
-
-
Zubarev, R.1
Mann, M.2
-
31
-
-
33847630405
-
Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry
-
DOI 10.1038/nmeth1019, PII NMETH1019
-
Elias, J. E.; Gygi, S. P. Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry Nat. Methods 2007, 4 (3) 207-214 (Pubitemid 46358868)
-
(2007)
Nature Methods
, vol.4
, Issue.3
, pp. 207-214
-
-
Elias, J.E.1
Gygi, S.P.2
-
32
-
-
26844559000
-
Exponentially modified protein abundance index (emPAI) for estimation of absolute protein amount in proteomics by the number of sequenced peptides per protein
-
DOI 10.1074/mcp.M500061-MCP200
-
Ishihama, Y.; Oda, Y.; Tabata, T.; Sato, T.; Nagasu, T.; Rappsilber, J.; Mann, M. Exponentially modified protein abundance index (emPAI) for estimation of absolute protein amount in proteomics by the number of sequenced peptides per protein Mol. Cell. Proteomics 2005, 4 (9) 1265-1272 (Pubitemid 41448714)
-
(2005)
Molecular and Cellular Proteomics
, vol.4
, Issue.9
, pp. 1265-1272
-
-
Ishihama, Y.1
Oda, Y.2
Tabata, T.3
Sato, T.4
Nagasu, T.5
Rappsilber, J.6
Mann, M.7
-
33
-
-
33745591083
-
Status of complete proteome analysis by mass spectrometry: SILAC labeled yeast as a model system
-
de Godoy, L. M. F.; Olsen, J. V.; de Souza, G. A.; Li, G. Q.; Mortensen, P.; Mann, M., Status of complete proteome analysis by mass spectrometry: SILAC labeled yeast as a model system. Genome Biol. 2006, 7, (6), -.
-
(2006)
Genome Biol.
, vol.7
, Issue.6
-
-
De Godoy, L.M.F.1
Olsen, J.V.2
De Souza, G.A.3
Li, G.Q.4
Mortensen, P.5
Mann, M.6
-
34
-
-
0000180578
-
Protease inhibitors in plants - Genes for improving defenses against insects and pathogens
-
Ryan, C. A. Protease inhibitors in plants - Genes for improving defenses against insects and pathogens Annu. Rev. Phytopathol. 1990, 28, 425-449
-
(1990)
Annu. Rev. Phytopathol.
, vol.28
, pp. 425-449
-
-
Ryan, C.A.1
-
35
-
-
0028853169
-
Inhibition of diabrotica larval growth by patatin, the lipid acyl hydrolase from potato-tubers
-
Strickland, J. A.; Orr, G. L.; Walsh, T. A. Inhibition of diabrotica larval growth by patatin, the lipid acyl hydrolase from potato-tubers Plant Physiol. 1995, 109 (2) 667-674
-
(1995)
Plant Physiol.
, vol.109
, Issue.2
, pp. 667-674
-
-
Strickland, J.A.1
Orr, G.L.2
Walsh, T.A.3
-
36
-
-
33746170608
-
Patatins, Kunitz protease inhibitors and other major proteins in tuber of potato cv. Kuras
-
DOI 10.1111/j.1742-4658.2006.05364.x
-
Bauw, G.; Nielsen, H. V.; Emmersen, J.; Nielsen, K. L.; Jorgensen, M.; Welinder, K. G. Patatins, Kunitz protease inhibitors and other major proteins in tuber of potato cv. Kuras FEBS J. 2006, 273 (15) 3569-3584 (Pubitemid 44086956)
-
(2006)
FEBS Journal
, vol.273
, Issue.15
, pp. 3569-3584
-
-
Bauw, G.1
Nielsen, H.V.2
Emmersen, J.3
Nielsen, K.L.4
Jorgensen, M.5
Welinder, K.G.6
-
37
-
-
27244435265
-
Comparison of tuber proteomes of potato varieties, landraces, and genetically modified lines
-
DOI 10.1104/pp.105.060152
-
Lehesranta, S. J.; Davies, H. V.; Shepherd, L. V. T.; Nunan, N.; McNicol, J. W.; Auriola, S.; Koistinen, K. M.; Suomalainen, S.; Kokko, H. I.; Karenlampi, S. O. Comparison of tuber proteomes of potato varieties, landraces, and genetically modified lines Plant Physiol. 2005, 138 (3) 1690-1699 (Pubitemid 43142112)
-
(2005)
Plant Physiology
, vol.138
, Issue.3
, pp. 1690-1699
-
-
Lehesranta, S.J.1
Davies, H.V.2
Shepherd, L.V.T.3
Nunan, N.4
McNicol, J.W.5
Auriola, S.6
Koistinen, K.M.7
Suomalainen, S.8
Kokko, H.I.9
Karenlampi, S.O.10
-
38
-
-
0024005547
-
Structural diversity of the patatin gene family in potato Cv desiree
-
Twell, D.; Ooms, G. Structural diversity of the patatin gene family in potato Cv desiree Mol. Gen. Genet. 1988, 212 (2) 325-336
-
(1988)
Mol. Gen. Genet.
, vol.212
, Issue.2
, pp. 325-336
-
-
Twell, D.1
Ooms, G.2
-
39
-
-
0035056359
-
Lipoxygenase is involved in the control of potato tuber development
-
DOI 10.1105/tpc.13.3.613
-
Kolomiets, M. V.; Hannapel, D. J.; Chen, H.; Tymeson, M.; Gladon, R. J. Lipoxygenase is involved in the control of potato tuber development Plant Cell 2001, 13 (3) 613-626 (Pubitemid 32265379)
-
(2001)
Plant Cell
, vol.13
, Issue.3
, pp. 613-626
-
-
Kolomiets, M.V.1
Hannapel, D.J.2
Chen, H.3
Tymeson, M.4
Gladon, R.J.5
-
40
-
-
0041402696
-
Structural diversity and organization of three gene families for Kunitz-type enzyme inhibitors from potato tubers (Solanum tuberosum l.)
-
DOI 10.1007/s00438-003-0860-0
-
Heibges, A.; Glaczinski, H.; Ballvora, A.; Salamini, F.; Gebhardt, C. Structural diversity and organization of three gene families for Kunitz-type enzyme inhibitors from potato tubers (Solanum tuberosum L.) Mol. Genet. Genomics 2003, 269 (4) 526-534 (Pubitemid 36976159)
-
(2003)
Molecular Genetics and Genomics
, vol.269
, Issue.4
, pp. 526-534
-
-
Heibges, A.1
Glaczinski, H.2
Ballvora, A.3
Salamini, F.4
Gebhardt, C.5
-
41
-
-
0024397661
-
Both wound-inducible and tuber-specific expression are mediated by the promoter of a single member of the potato proteinase inhibitor II gene family
-
Keil, M.; Sanchezserrano, J. J.; Willmitzer, L. Both Wound-Inducible and Tuber-Specific Expression Are Mediated by the Promoter of a Single Member of the Potato Proteinase Inhibitor-II gene family EMBO J. 1989, 8 (5) 1323-1330 (Pubitemid 19274356)
-
(1989)
EMBO Journal
, vol.8
, Issue.5
, pp. 1323-1330
-
-
Keil, M.1
Sanchez-Serrano, J.J.2
Willmitzer, L.3
-
42
-
-
0001503501
-
Molecular Characterization of a Wound-Inducible Inhibitor-I Gene from Potato and the Processing of Its Messenger-Rna and Protein
-
Cleveland, T. E.; Thornburg, R. W.; Ryan, C. A. Molecular Characterization of a Wound-Inducible Inhibitor-I Gene from Potato and the Processing of Its Messenger-Rna and Protein Plant Mol Biol 1987, 8 (3) 199-207
-
(1987)
Plant Mol Biol
, vol.8
, Issue.3
, pp. 199-207
-
-
Cleveland, T.E.1
Thornburg, R.W.2
Ryan, C.A.3
-
43
-
-
0026033450
-
Genetic and physical mapping of the patatin genes in potato and tomato
-
Ganal, M. W.; Bonierbale, M. W.; Roeder, M. S.; Park, W. D.; Tanksley, S. D. Genetic and physical mapping of the patatin genes in potato and tomato Mol. Gen. Genet. 1991, 225 (3) 501-509
-
(1991)
Mol. Gen. Genet.
, vol.225
, Issue.3
, pp. 501-509
-
-
Ganal, M.W.1
Bonierbale, M.W.2
Roeder, M.S.3
Park, W.D.4
Tanksley, S.D.5
-
44
-
-
33644778739
-
Structural diversity and differential transcription of the patatin multicopy gene family during potato tuber development
-
DOI 10.1534/genetics.105.051219
-
Stupar, R. M.; Beaubien, K. A.; Jin, W. W.; Song, J. Q.; Lee, M. K.; Wu, C. C.; Zhang, H. B.; Han, B.; Jiang, J. M. Structural diversity and differential transcription of the patatin multicopy gene family during potato tuber development Genetics 2006, 172 (2) 1263-1275 (Pubitemid 43345456)
-
(2006)
Genetics
, vol.172
, Issue.2
, pp. 1263-1275
-
-
Stupar, R.M.1
Beaubien, K.A.2
Jin, W.3
Song, J.4
Lee, M.-K.5
Wu, C.6
Zhang, H.-B.7
Han, B.8
Jiang, J.9
-
45
-
-
0000193105
-
Potato tuber-inducing activities of jasmonic acid and related-compounds
-
Koda, Y.; Kikuta, Y.; Tazaki, H.; Tsujino, Y.; Sakamura, S.; Yoshihara, T. Potato tuber-inducing activities of jasmonic acid and related-compounds Phytochemistry 1991, 30 (5) 1435-1438
-
(1991)
Phytochemistry
, vol.30
, Issue.5
, pp. 1435-1438
-
-
Koda, Y.1
Kikuta, Y.2
Tazaki, H.3
Tsujino, Y.4
Sakamura, S.5
Yoshihara, T.6
-
46
-
-
0033452034
-
Endogenous jasmonic acid and radial cell expansion in buds of potato tubers
-
Castro, G.; Kraus, T.; Abdala, G. Endogenous jasmonic acid and radial cell expansion in buds of potato tubers J. Plant Physiol. 1999, 155 (6) 706-710 (Pubitemid 30044592)
-
(1999)
Journal of Plant Physiology
, vol.155
, Issue.6
, pp. 706-710
-
-
Castro, G.1
Kraus, T.2
Abdala, G.3
-
47
-
-
0032818549
-
Multiple signaling pathways control tuber induction in potato
-
Jackson, S. D. Multiple signaling pathways control tuber induction in potato Plant Physiol. 1999, 119 (1) 1-8 (Pubitemid 29384574)
-
(1999)
Plant Physiology
, vol.119
, Issue.1
, pp. 1-8
-
-
Jackson, S.D.1
-
48
-
-
0026229772
-
Patatin and 4 serine proteinase-inhibitor genes are differentially expressed during potato-tuber development
-
Hendriks, T.; Vreugdenhil, D.; Stiekema, W. J. Patatin and 4 serine proteinase-inhibitor genes are differentially expressed during potato-tuber development Plant Mol. Biol. 1991, 17 (3) 385-394
-
(1991)
Plant Mol. Biol.
, vol.17
, Issue.3
, pp. 385-394
-
-
Hendriks, T.1
Vreugdenhil, D.2
Stiekema, W.J.3
-
49
-
-
67349130075
-
Developmentally linked changes in proteases and protease inhibitors suggest a role for potato multicystatin in regulating protein content of potato tubers
-
Weeda, S. M.; Mohan Kumar, G. N.; Richard Knowles, N. Developmentally linked changes in proteases and protease inhibitors suggest a role for potato multicystatin in regulating protein content of potato tubers Planta 2009, 230 (1) 73-84
-
(2009)
Planta
, vol.230
, Issue.1
, pp. 73-84
-
-
Weeda, S.M.1
Mohan Kumar, G.N.2
Richard Knowles, N.3
-
50
-
-
85047686259
-
Molecular and biochemical triggers of potato tuber development
-
DOI 10.1104/pp.127.4.1459
-
Fernie, A. R.; Willmitzer, L. Molecular and biochemical triggers of potato tuber development Plant Physiol. 2001, 127 (4) 1459-1465 (Pubitemid 34050014)
-
(2001)
Plant Physiology
, vol.127
, Issue.4
, pp. 1459-1465
-
-
Fernie, A.R.1
Willmitzer, L.2
-
51
-
-
0030138199
-
Visualization of differential gene expression using a novel method of RNA fingerprinting based on AFLP: Analysis of gene expression during potato tuber development
-
Bachem, C. W.; van der Hoeven, R. S.; de Bruijn, S. M.; Vreugdenhil, D.; Zabeau, M.; Visser, R. G. Visualization of differential gene expression using a novel method of RNA fingerprinting based on AFLP: analysis of gene expression during potato tuber development Plant J. 1996, 9 (5) 745-753 (Pubitemid 126661055)
-
(1996)
Plant Journal
, vol.9
, Issue.5
, pp. 745-753
-
-
Bachem, C.W.B.1
Van Der Hoeven, R.S.2
De Bruijn, S.M.3
Vreugdenhil, D.4
Zabeau, M.5
Visser, R.G.F.6
-
52
-
-
0035863234
-
Probing a novel potato lipoxygenase with dual positional specificity reveals primary determinants of substrate binding and requirements for a surface hydrophobic loop and has implications for the role of lipoxygenases in tubers
-
DOI 10.1042/0264-6021:3530345
-
Hughes, R. K.; West, S. I.; Hornostaj, A. R.; Lawson, D. M.; Fairhurst, S. A.; Sanchez, R. O.; Hough, P.; Robinson, B. H.; Casey, R. Probing a novel potato lipoxygenase with dual positional specificity reveals primary determinants of substrate binding and requirements for a surface hydrophobic loop and has implications for the role of lipoxygenases in tubers Biochem. J. 2001, 353 (Pt. 2) 345-355 (Pubitemid 32096945)
-
(2001)
Biochemical Journal
, vol.353
, Issue.2
, pp. 345-355
-
-
Hughes, R.K.1
West, S.I.2
Hornostaj, A.R.3
Lawson, D.M.4
Fairhurst, S.A.5
Sanchez, R.O.6
Hough, P.7
Robinson, B.H.8
Casey, R.9
-
53
-
-
0029809331
-
Characterization of three potato lipoxygenases with distinct enzymatic activities and different organ-specific and wound-regulated expression patterns
-
DOI 10.1074/jbc.271.35.21012
-
Royo, J.; Vancanneyt, G.; Perez, A. G.; Sanz, C.; Stormann, K.; Rosahl, S.; Sanchez-Serrano, J. J. Characterization of three potato lipoxygenases with distinct enzymatic activities and different organ-specific and wound-regulated expression patterns J. Biol. Chem. 1996, 271 (35) 21012-21019 (Pubitemid 26292946)
-
(1996)
Journal of Biological Chemistry
, vol.271
, Issue.35
, pp. 21012-21019
-
-
Royo, J.1
Vancanneyt, G.2
Perez, A.G.3
Sanz, C.4
Stormann, K.5
Rosahl, S.6
Sanchez-Serrano, J.J.7
-
54
-
-
77953233453
-
Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines
-
Atwell, S.; Huang, Y. S.; Vilhjalmsson, B. J.; Willems, G.; Horton, M.; Li, Y.; Meng, D. Z.; Platt, A.; Tarone, A. M.; Hu, T. T.; Jiang, R.; Muliyati, N. W.; Zhang, X.; Amer, M. A.; Baxter, I.; Brachi, B.; Chory, J.; Dean, C.; Debieu, M.; de Meaux, J.; Ecker, J. R.; Faure, N.; Kniskern, J. M.; Jones, J. D. G.; Michael, T.; Nemri, A.; Roux, F.; Salt, D. E.; Tang, C. L.; Todesco, M.; Traw, M. B.; Weigel, D.; Marjoram, P.; Borevitz, J. O.; Bergelson, J.; Nordborg, M. Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines Nature 2010, 465 (7298) 627-631
-
(2010)
Nature
, vol.465
, Issue.7298
, pp. 627-631
-
-
Atwell, S.1
Huang, Y.S.2
Vilhjalmsson, B.J.3
Willems, G.4
Horton, M.5
Li, Y.6
Meng, D.Z.7
Platt, A.8
Tarone, A.M.9
Hu, T.T.10
Jiang, R.11
Muliyati, N.W.12
Zhang, X.13
Amer, M.A.14
Baxter, I.15
Brachi, B.16
Chory, J.17
Dean, C.18
Debieu, M.19
De Meaux, J.20
Ecker, J.R.21
Faure, N.22
Kniskern, J.M.23
Jones, J.D.G.24
Michael, T.25
Nemri, A.26
Roux, F.27
Salt, D.E.28
Tang, C.L.29
Todesco, M.30
Traw, M.B.31
Weigel, D.32
Marjoram, P.33
Borevitz, J.O.34
Bergelson, J.35
Nordborg, M.36
more..
-
55
-
-
34547108086
-
Common sequence polymorphisms shaping genetic diversity in Arabidopsis thaliana
-
DOI 10.1126/science.1138632
-
Clark, R. M.; Schweikert, G.; Toomajian, C.; Ossowski, S.; Zeller, G.; Shinn, P.; Warthmann, N.; Hu, T. T.; Fu, G.; Hinds, D. A.; Chen, H. M.; Frazer, K. A.; Huson, D. H.; Schoelkopf, B.; Nordborg, M.; Raetsch, G.; Ecker, J. R.; Weigel, D. Common sequence polymorphisms shaping genetic diversity in Arabidopsis thaliana Science 2007, 317 (5836) 338-342 (Pubitemid 47106367)
-
(2007)
Science
, vol.317
, Issue.5836
, pp. 338-342
-
-
Clark, R.M.1
Schweikert, G.2
Toomajian, C.3
Ossowski, S.4
Zeller, G.5
Shinn, P.6
Warthmann, N.7
Hu, T.T.8
Fu, G.9
Hinds, D.A.10
Chen, H.11
Frazer, K.A.12
Huson, D.H.13
Scholkopf, B.14
Nordborg, M.15
Ratsch, G.16
Ecker, J.R.17
Weigel, D.18
-
56
-
-
33645938294
-
Plant genome organisation and diversity: The year of the junk!
-
Morgante, M. Plant genome organisation and diversity: the year of the junk! Curr. Opin. Biotechnol. 2006, 17 (2) 168-173
-
(2006)
Curr. Opin. Biotechnol.
, vol.17
, Issue.2
, pp. 168-173
-
-
Morgante, M.1
-
57
-
-
33847652913
-
Effects of agricultural production systems and their components on protein profiles of potato tubers
-
DOI 10.1002/pmic.200600889
-
Lehesranta, S. J.; Koistinen, K. M.; Massat, N.; Davies, H. V.; Shepherd, L. V. T.; McNicol, J. W.; Cakmak, I.; Cooper, J.; Luck, L.; Karenlampi, S. O.; Leifert, C. Effects of agricultural production systems and their components on protein profiles of potato tubers Proteomics 2007, 7, 597-604 (Pubitemid 46362623)
-
(2007)
Proteomics
, vol.7
, Issue.4
, pp. 597-604
-
-
Lehesranta, S.J.1
Koistinen, K.M.2
Massat, N.3
Davies, H.V.4
Shepherd, L.V.T.5
McNicol, J.W.6
Cakmak, I.7
Cooper, J.8
Luck, L.9
Karenlampi, S.O.10
Leifert, C.11
-
58
-
-
33751241424
-
Metabolite profiling of wheat grains (Triticum aestivum L.) from organic and conventional agriculture
-
DOI 10.1021/jf0615451
-
Zorb, C.; Langenkamper, G.; Betsche, T.; Niehaus, K.; Barsch, A. Metabolite profiling of wheat grains (Triticum aestivum L.) from organic and conventional agriculture J. Agric. Food Chem. 2006, 54 (21) 8301-8306 (Pubitemid 44785418)
-
(2006)
Journal of Agricultural and Food Chemistry
, vol.54
, Issue.21
, pp. 8301-8306
-
-
Zorb, C.1
Langenkamper, G.2
Betsche, T.3
Neehaus, K.4
Barsch, A.5
|