Direct Analysis and Identification of Proteins in Mixtures by LC/MS/MS and Database Searching at the Low-Femtomole Level

Analytical Chemistry

Volumn 69, Issue 4, 1997, Pages 767-776

  McCormack, Ashley L ^a   Schieltz, David M ^a   Goode, Bruce ^b   Yang, Shirley ^b   Barnes, Georjana ^a   Drubin, David ^a   Yates III, John R ^a  

^a UNIVERSITY OF WASHINGTON   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

PROTEIN;

ARTICLE; COMPUTER PROGRAM; FACTUAL DATABASE; HIGH PERFORMANCE LIQUID CHROMATOGRAPHY; MASS SPECTROMETRY; METHODOLOGY; MOLECULAR WEIGHT; PEPTIDE MAPPING;

CHROMATOGRAPHY, HIGH PRESSURE LIQUID; DATABASES, FACTUAL; MASS SPECTROMETRY; MOLECULAR WEIGHT; PEPTIDE MAPPING; PROTEINS; SOFTWARE;

EID: 0031568420     PISSN: 00032700     EISSN: None     Source Type: Journal    
DOI: 10.1021/ac960799q     Document Type: Article

References (39)

1. Tandem mass spectrometry, McLafferty, F. W., Ed.; Wiley: New York, 1983.
2. Busch, K. L.; Glish, G. L; McLuckey, S. A. Mass Spectrometry/Mass Spectrometry: Techniques and Applications of Tandem Mass Spectrotnetry; VCH Publishers, Inc.: New York, NY, 1988.
3. Hunt, D. F.; Yates, J. R., III; Shabanowitz, J.; Winston, S.; Hauer, C. R. Proc. Natl. Acad. Sci. U.S.A 1986, 83, 6233-6237.
4. Biemann, K. Biomed. Environ. Mass Spectrom. 1988, 16, 99-11.
5. Medzihradsky, K. F.; Burlingame, A. L. Methods: A Companion to Methods in Enzymology; Academic Press: San Diego, CA, 1994; Vol. 6, 284-303.
6. McCormack, A. L.; Eng, J.; Yates, J. R., III. Methods: A Companion to Methods in Enzymology; Academic Press: San Diego, CA, 1994; Vol. 6, 274-283.
7. Cooks, R. G.; Amy, J. W.; Bier, M. E.; Schwartz, J. C.; Schey, K. L.; Chidsey, C. D. Adv. Mass Spectrom. 1988, 11, 33-50.
8. Wysocki, V. H.; Jones, J. L.; Ding, J. M. J. Am. Chem. Soc. 1991, 113, 8969-8970.
9. McCormack, A. L.; Somogyi, A.; Dongre, A. R.; Wysocki, V. H. Anal. Chem. 1993, 65, 2859-2872.
10. Hunt, D. F.; Shabanowitz, J.; Yates, J. R., III. J. Chem. Soc., Chem. Commun. 1987, 548-550.
11. Martin, S. A.; Hill, J. A.; Kittrell, C.; Biemann, K. J. Am. Soc. Mass Spectrom. 1990, 1, 107-109.
12. Senko, M. W.; Beu, S. C.; McLafferty, F. W. Anal. Chem. 1994, 66, 415-417.
13. Cox, K. A.; Williams, J. D.; Cooks, R. G.; Kaiser, R. E., Jr. Biol. Mass Spectrom. 1992, 21, 226-241.
14. Hail, M.; Lewis, S.; Jardine, I.; Liu, J.; Novotny, M.J. Microcolumn Sep. 1990, 2, 285-290.
15. Huang, E. C.; Henion, J. D. J. Am. Soc. Mass Spectrom. 1990, 1, 158-165.
16. Griffin, P. R.; Coffman, J. A.; Hood, L. E.; Yates, J. R., III. Int. J. Mass Spectrom. Ion Processes 1991, 111, 131-149.
17. Hunt, D. F.; Henderson, R. A.; Shabanowitz, J.; Sakaguchi, K.; Michel, H.; Sevilir, N.; Cox, A. L; Apella, E.; Engelhard, V. N. Science (Washington, D.C.) 1992, 255, 1261-1263.
18. Yates, J. R., III; Eng, J.; McCormack, A. L.; Schieltz, D. Anal. Chem. 1995, 67, 1426-1436.
19. Stahl, D. C.; Swiderek, K. M.; Davis, M. T.; Lee, T. D. J. Am. Soc. Mass Spectrom. 1996, 7, 532-540.
20. McCormack, A. L.; Eng, J. K.; DeRoos, P. C.; Rudensky, A. Y.; Yates, J. R., III. Microcolumn liquid chromatography-Electrospray ionization tandem mass spectrometry: Analysis of immunological samples. In Biochemical and Biotechnological Applications of Electrospray Ionization Mass Spectrometry; Snyder, A. P., Ed.; American Chemical Society: Washington, DC, 1995; pp 207-225.
21. Eng, J.; McCormack, A. L.; Yates, J. R., III. J. Am. Soc. Mass Spectrom. 1994, 5, 976-989.
22. Yates, J. R., III; Eng, J.; McCormack, A. L. Anal. Chem. 1995, 67, 3202-3210.
23. Kolodziej, P.; Young, R. In Guide to Yeast Genetics and Molecular Biology, Guthrie, C., Fink, G., Eds.; Academic Press: San Diego, CA, 1991: p 508.
24. Bradford, M. Anal. Biochem. 1976, 72, 248-254.
25. Ellis, R. W.; DeFeo, D.; Shih, T. Y.; Gonda, M. A.; Young, H. A.; Tsuchida, N.; Lowy, D. R.; Scolnick, E. M. Nature 1981, 292, 506-511.
26. Shih, T. Y.; Papageorge, A. G.; Stokes, P. E.; Weeks, M. O.; Scolnik, E. M. Nature 1980, 287, 686-691.
27. Mitchison, T.; Kirschner, M. Nature 1984, 312, 232-237.
28. Drubin, D. G.; Miller, K. G.; Botstein, D. J. Cell Biol. 1988, 107, 2551-2561.
29. Kennedy R. T.; Jorgenson, J. W. Anal. Chem. 1989, 61, 1128-1135.
30. Yates, J. R., III; McCormack, A. L.; Hayden, J. B.; Davey, M. P. In Cell Biology: A Laboratory Handbook; Celis, J. E., Ed.; Academic Press: San Diego, CA, 1994; p 380.
31. Yates, J. R., III; McCormack, A. L.; Link, A. J.; Schieltz, D.; Eng, J.; Hays, L. Analyst 1996, 121, 65R-76R.
32. Link, A.; Carmack, E.; Yates, J. R. Int. J. Mass Spectrom. Ion Process, in press.
33. Phizicky, E. M.; Fields, S. Microbiol. Rev. 1995, 59, 94-123.
34. Fields, S.; Sternglanz, R. Trends Genet. 1994, 10, 286-292.
35. Chien, C. T.; Bartel, P. L.; Sternglanz, R.; Fields, S. Proc. Natl. Acad. Sci. U.S.A. 1991, 88, 9578-9582.
36. Holtzman, D. A.; Yang S.; Drubin, D. G. J. Cell Biol. 1993, 122, 635-644.
37. Kolodrubetz, D.; Burgum, A. J. Biol. Chem. 1990, 265, 3234-3239.
38. Duncan, K.; Edwards, R. M.; Coggins, J. R. Biochem. J. 1987, 246, 375-86.
39. Barnes, G.; Louie, K. A.; Botstein, D. Mol. Biol. Cell. 1992, 3, 29-47.