Genetic diversity of the ordinary strain of Potato virus y (pvy) and origin of recombinant PVY strains

Phytopathology

Volumn 101, Issue 7, 2011, Pages 778-785

  Karasev, Alexander V ^a   Hu, Xiaojun ^a   Brown, Celeste J ^a   Kerlan, Camille ^a   Nikolaeva, Olga V ^a   Crosslin, James M ^b   Gray, Stewart M ^c  

^a UNIVERSITY OF IDAHO   (United States)

^b U S DEPARTMENT OF AGRICULTURE   (United States)

^c Department of Obstetrics Gynecology   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CAPSID PROTEIN; MONOCLONAL ANTIBODY; VIRUS RNA;

AMINO ACID SEQUENCE; ARTICLE; CHEMISTRY; CHENOPODIUM; CLASSIFICATION; DNA SEQUENCE; GENETIC RECOMBINATION; GENETIC VARIABILITY; GENETICS; IMMUNOLOGY; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PATHOGENICITY; PHYLOGENY; PLANT DISEASE; PLANT LEAF; POTATO; POTYVIRUS; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SEQUENCE ALIGNMENT; SEROTYPING; TOBACCO; VIROLOGY; VIRUS GENOME;

AMINO ACID SEQUENCE; ANTIBODIES, MONOCLONAL; BASE SEQUENCE; CAPSID PROTEINS; CHENOPODIUM; GENETIC VARIATION; GENOME, VIRAL; MOLECULAR SEQUENCE DATA; PHYLOGENY; PLANT DISEASES; PLANT LEAVES; POTYVIRUS; RECOMBINATION, GENETIC; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RNA, VIRAL; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA; SEROTYPING; SOLANUM TUBEROSUM; TOBACCO;

NICOTIANA TABACUM; POTATO VIRUS Y; POTYVIRUS; SOLANUM TUBEROSUM;

EID: 79959922091     PISSN: 0031949X     EISSN: None     Source Type: Journal    
DOI: 10.1094/PHYTO-10-10-0284     Document Type: Article

References (32)

1. Baldauf, P. M., Gray, S. M., and Perry, K. L. 2006. Biological and serological properties of Potato virus Y isolates in northeastern United States potato. Plant Dis. 90:559-566. (Pubitemid 43672693)
2. Beczner, L., Horvath, H., Romhanyi, L., and Forster, H. 1984. Etiology of tuber ringspot disease in potato. Potato Res. 27:339-351.
3. Blanchard, A., Rolland, M., Lacroix, C., Kerlan, C., and Jacquot, E. 2008. Potato virus Y: A century of evolution. Curr. Topics Virol. 7:21-32.
4. Chrzanowska, M. 1991. New isolates of the necrotic strain of potato virus Y (PVYN) found recently in Poland. Potato Res. 34:179-182.
5. Cockerham, G. 1970. Genetical studies on resistance to potato viruses X and Y. Heredity 25:309-348.
6. de Bokx, J. A., and Huttinga, H. 1981. Potato Virus Y. Descriptions of Plant Viruses, No. 242. Commonw. Mycol. Inst./Assoc. Appl. Biol., Kew, England. Online. www.dpvweb.net/dpv/showdpv.php?dpvno=242.
7. Ellis, P., StaceSmith, R., Bowler, G., and Mackenzie, D. J. 1996. Production of monoclonal antibodies for detection and identification of strains of potato virus Y. Can. J. Plant Pathol. 18:64-70. (Pubitemid 126486964)
8. Fomicheva, V. W., Fletcher, J. D., and Schubert, J. 2009. Potato virus Y strain spectrum in New Zealand-absence of recombinant N:O Strains. J. Phytopathol. 157:507-510.
9. N isolates. Arch. Virol. 147 :363-378. (Pubitemid 34159555)
10. Gray, S. M., DeBoer, S. H., Lorenzen, J., Karasev, A. V., Whitworth, J., Nolte, P., Singh, R. P., Boucher, A., and Xu, H. 2010. Potato virus Y: A significant and evolving threat to potato crops in the United States and Canada. Plant Dis. 94:1384-1397.
11. Hu, X., Karasev, A. V., Brown, C. J., and Lorenzen, J. H. 2009. Sequencecharacteristics of Potato virus Y recombinants. J. Gen. Virol. 90:3033-3041.
12. Hu, X., Meacham, T., Ewing, L., Gray, S. M., and Karasev, A. V. 2009. A novel recombinant strain of Potato virus Y suggests a new viral genetic determinant of vein necrosis in tobacco. Virus Res. 143:68-76.
13. Jones, R. A. C. 1990. Strain group specific and virus hypersensitive reactions to infection with potyviruses in potato cultivars. Ann. Appl. Biol. 117:93-105.
14. Karasev, A. V., Meacham, T., Hu, X., Whitworth, J., Gray, S. M., Olsen, N., and Nolte, P. 2008. Identification of PVY strains associated with tuber damage during an outbreak of PVY in potato in Idaho. Plant Dis. 92:1371-1371.
15. Karasev, A. V., Nikolaeva, O. V., Hu, X., Sielaff, Z., Whitworth, J., Lorenzen, J. H., and Gray, S. M. 2010. Serological properties of ordinary and necrotic isolates of Potato virus Y: A case study of PVYN misidentification. Am. J. Potato Res. 87:1-9.
16. Kerlan, C. 2006. Potato virus Y. Descriptions of Plant Viruses no. 414. Association of Applied Biologists, UK. Online. www.dpvweb.net/dpv/showdpv.php? dpvno=414.
17. Kerlan, C., and Moury, B. 2008. Potato virus Y. Pages 287-296 in: Encyclopedia of Virology, Third Edition, vol. 4. B. W. J. Mahy and M. H. V. Van Regenmortel, eds. Elsevier, Oxford.
18. Lorenzen, J. H., Meacham, T., Berger, P. H., Shiel, P. J., Crosslin, J. M., Hamm, P. B., and Kopp H. 2006. Whole genome characterization of Potato virus Y isolates collected in the western USA and their comparison to isolates from Europe and Canada. Arch. Virol. 151:1055-1074. (Pubitemid 43806809)
19. Lorenzen, J. H., Nolte, P., Martin, D., Pasche, J. S., and Gudmestad, N. C. 2008. NE-11 represents a new strain variant class of Potato virus Y. Arch Virol. 153:517-525.
20. Lorenzen, J. H., Piche, L. M., Gudmestad, N. C., Meacham, T., and Shiel, P. 2006. A multiplex PCR assay to characterize Potato virus Y isolates and identify strain mixtures. Plant Dis. 90:935-940.
21. O variants of Potato virus Y in potato in New Brunswick, Canada. Plant Dis. 95:113-119.
22. Nie, X., Singh, R. P., and Singh, M. 2004. Molecular and pathological characterization of N:O isolates of the Potato virus Y from Manitoba, Canada. Can. J. Plant Pathol. 26:573-583.
23. Nolte, P., Whitworth, J. L., Thornton, M. K., and McIntosh, C. S. 2004. Effect of seedborne Potato virus Y on performance of Russet Burbank, Russet Norkotah, and Shepody potato. Plant Dis. 88:248-252. (Pubitemid 38390726)
24. Piche, L. M., Singh, R. P., Nie, X., and Gudmestad, N. C. 2004. Diversity among Potato virus Y isolates obtained from potatoes grown in the United States. Phytopathology 94:1368-1375. (Pubitemid 39569384)
25. Roossinck, M. J. 1997. Mechanisms of plant virus evolution. Annu. Rev. Phytopathol. 35:191-209.
26. Roossinck, M. J. 2003. Plant RNA virus evolution. Curr. Opin. Microbiol. 6:406-409. (Pubitemid 37075361)
27. Schubert, J., Fomitcheva, V., and Sztangret-Wisniewski, J. 2007. Differentiation of Potato virus Y using improved sets of diagnostic PCRprimers. J. Virol. Methods 140:66-74. (Pubitemid 46201706)
28. Simon, A. E., and Bujarski, J. J. 1994. RNA-RNA recombination and evolution in virus-infected plants. Annu. Rev. Phytopathol. 32:337-362. (Pubitemid 2151439)
29. O). Can. J. Plant Pathol. 18:209-214.
30. Singh, R. P., Valkonen, J. P. T., Gray, S. M., Boonham, N., Jones, R. A. C., Kerlan, C., and Schubert, J. 2008. Discussion paper: The naming of Potato virus Y strains infecting potato. Arch. Virol. 153:1-13.
31. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F., and Higgins, D. G. 1997. The CLUSTAL-X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25:4876-4882. (Pubitemid 28022245)
32. Valkonen, J. P. T. 1997. Novel resistances to potyviruses in tuber-bearing potato species, and temperature-sensitive expression of hypersensitive resistance to potato virus Y. Ann. Appl. Biol. 130:91-104. (Pubitemid 27266478)