Plant RNA virus evolution

Current Opinion in Microbiology

Volumn 6, Issue 4, 2003, Pages 406-409

  Roossinck, Marilyn J ^a  

^a PLANT BIOLOGY DIVISION   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AGRICULTURE; EVOLUTION; GENE FREQUENCY; GENE MUTATION; GENETIC ANALYSIS; NONHUMAN; PHYLOGENY; PLANT VIRUS; REVIEW; RNA VIRUS; SPECIES DIFFERENCE; VIRUS CELL INTERACTION; VIRUS ISOLATION;

RNA VIRUSES;

EID: 0043197320     PISSN: 13695274     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1369-5274(03)00087-0     Document Type: Review

References (23)

1. Roossinck MJ: Cucumber mosaic virus, a model for RNA virus evolution. Mol Plant Pathol 2001, 2:59-63.
2. Harper G, Hull R, Lockhart B, Olszewski N: Viral sequences integrated into plant genomes. Annu Rev Phytopathol 2002, 40:119-136. This paper describes the recently discovered pararetroviruses that are integrated in many plant genomes, with an emphasis on those that can produce episomal infections.
3. Milne RG, Marzachi C: Cryptoviruses (Partitiviridae). In Encyclopedia of Virology. Edited by Webster RG, Granoff A: Academic Press; 1999, vol 1:312-315.
4. Lucas WJ, Bouché-Pillon S, Jackson DP, Nguyen L, Baker L, Ding B, Hake S: Selective trafficking of KNOTTED1 homeodomain protein and its mRNA through plasmodesmata. Science 1995, 270:1980-1983.
5. Melcher U: The '30K' superfamily of viral movement proteins. J Gen Virol 2000, 81:257-266.
6. Callaway A, Giesman-Cookmeyer D, Gillock ET, Sit TL, Lommel SA: The multifunctional capsid proteins of plant RNA viruses. Annu Rev Phytopathol 2001, 39:419-460.
7. Roossinck MJ: Evolutionary history of Cucumber mosaic virus as deduced by phylogenetic analyses. J Virol 2002, 76:3382-3387.
8. Gibbs A, Keese PK: In search of the origin of viral genes. In Molecular Basis of Virus Evolution. Edited by Gibbs AJ, Calisher CH, García-Arenal F. Cambridge University Press; 1995:77-90.
9. Malpica JM, Fraile A, Moreno I, Obies CI, Drake JW, García-Arenal F: The rate and character of spontaneous mutations in an RNA virus. Genetics 2002, 162:1505-1511.
10. Schneider WL, Roossinck MJ: Evolutionarily related sindbis-like plant viruses maintain different levels of population diversity in a common host. J Virol 2000, 74:3130-3134.
11. Schneider WL, Roossinck MJ: Genetic diversity in RNA viral quasispecies is controlled by host-virus interactions. J Virol 2001, 75:6566-6571. This paper demonstrates that mutation frequencies for different viruses establish a specific level that is an intrinsic property of host-virus interactions, by switching virus populations between high mutation frequency and low mutation frequency hosts.
12. Moran J, vanRijswijk B, Traicevski V, Kitajima EW, Mackenzie AM, Gibbs AJ: Potyviruses, novel and known, in cultivated and wild species of the family Apiaceae in Australia. Arch Virol 2002, 147:1855-1867.
13. Bruyere A, Wantroba M, Flasinski S, Dzianott A, Bujarski JJ: Frequent homologous recombination events between molecules of one RNA component in a multipartite RNA virus. J Virol 2000, 74:4214-4219.
14. Chen Y-K, Goldbach R, Prins M: Inter- and intramolecular recombinations in the Cucumber mosaic virus genome related to adaptation to alstroemeria. J Virol 2002, 76:4119-4124.
15. Roossinck MJ, Zhang L, Hellwald K-H: Rearrangements in the 5′ nontranslated region and phylogenetic analyses of cucumber mosaic virus RNA 3 indicate radial evolution of three subgroups. J Virol 1999, 73:6752-6758.
16. García-Arenal F, Fraile A, Malpica JM: Variability and genetic structure of plant virus populations. Annu Rev Phytopathol 2001, 39:157-186. This paper provides a thorough review of population studies in plant viruses and highlights some of the current controversies in the field.
17. Lin H-X, Rubio L, Smythe A, Jiminez M, Falk BW: Genetic diversity and biological variation among California isolates of Cucumber mosaic virus. J Gen Virol 2003, 84:249-258. This paper reports a comprehensive field study of strains of Cucumber mosaic virus in California, including some that are able to overcome the engineered resistance to the virus that has been deployed in fields in California.
18. Rabenstein F, Seifers DL, Schubert J, French R, Stenger DC: Phylogenetic relationships, strain diversity and biogeography of tritimoviruses. J Gen Virol 2002, 83:895-906.
19. Moonan F, Mirkov TE: Analyses of genotypic diversity among North, South, and Central American isolates of Sugarcane yellow leaf virus: Evidence for Colombian origins and for intraspecific spatial phylogenetic variation. J Virol 2002, 76:1339-1348.
20. Moonan F, Molina J, Mirkov TE: Sugarcane yellow leaf virus: an emerging virus that has evolved by recombination between luteoviral and poleroviral ancestors. Virology 2000, 269:156-171.
21. Mlotshwa S, Voinnet O, Mette MF, Matzke M, Vaucheret H, Ding SW, Pruss G, Vance VB: RNA silencing and the mobile silencing signal. Plant Cell 2002, 14(Suppl 1):S289-S301. This review paper gives a thorough overview of post-transcriptional gene-silencing and the virus genes that have evolved to overcome this plant defense mechanism.
22. Ding S-W, Anderson BJ, Haase HR, Symons RH: New overlapping gene encoded by the cucumber mosaic virus genome. Virology 1994, 198:593-601.
23. Turnbull M, Webb B: Perspectives on polydnavirus origins and evolution. Adv Virus Res 2002, 58:203-254.