A novel recombinant strain of Potato virus Y suggests a new viral genetic determinant of vein necrosis in tobacco

Virus Research

Volumn 143, Issue 1, 2009, Pages 68-76

  Hu, Xiaojun ^a   Meacham, Teresa ^a   Ewing, Lorie ^a   Gray, Stewart M ^b   Karasev, Alexander V ^a  

^a UNIVERSITY OF IDAHO   (United States)

^b Department of Obstetrics Gynecology   (United States)

Author keywords

Potato virus Y; Tobacco vein necrosis; Virus genetic determinant

Indexed keywords

ARTICLE; GENE SEQUENCE; GENETIC ANALYSIS; HEREDITY; NONHUMAN; NUCLEOTIDE SEQUENCE; POTYVIRUS; PRIORITY JOURNAL; TOBACCO; UNINDEXED SEQUENCE; VEIN NECROSIS; VIRAL PLANT DISEASE; VIRUS GENOME; VIRUS RECOMBINANT; VIRUS STRAIN;

AMINO ACID SEQUENCE; AMINO ACID SUBSTITUTION; CYSTEINE ENDOPEPTIDASES; DNA, RECOMBINANT; GENOME, VIRAL; MOLECULAR SEQUENCE DATA; NECROSIS; PHYLOGENY; PLANT LEAVES; POTYVIRUS; RNA, VIRAL; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA; SEROTYPING; SOLANUM TUBEROSUM; TOBACCO; VIRAL PROTEINS;

NICOTIANA TABACUM; POTATO VIRUS Y; SOLANUM TUBEROSUM;

EID: 67349099192     PISSN: 01681702     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.virusres.2009.03.008     Document Type: Article

References (51)

1. Atreya C.D., and Pirone T.P. Mutational analysis of the helper component-proteinase gene of a potyvirus: effects of amino acid substitutions, deletions, and gene replacement on virulence and aphid transmissibility. Proc. Natl. Acad. Sci. U.S.A. 90 (1993) 11919-11923
2. Baldauf P.M., Gray S.M., and Perry K.L. Biological and serological properties of Potato virus Y isolates in northeastern United States. Plant Dis. 90 (2006) 559-566
3. Beczner L., Horváth J., Romhányi I., and Förster H. Studies on the etiology of tuber necrotic ringspot disease in potato. Potato Res. 27 (1984) 339-352
4. Berezin C., Glaser F., Rosenberg J., Paz I., Pupko T., Fariselli P., Casadio R., and Ben-Tal N. ConSeq: the identification of functionally and structurally important residues in protein sequences. Bioinformatics 20 (2004) 1322-1324
5. Berger P.H., Barnett O.W., Brunt A.A., Colinet D., et al. Family potyviridae. In: van Regenmortel, et al. (Ed). Virus Taxonomy, Classification and Nomenclature of Viruses. Seventh Report of the International Committee on Taxonomy of Viruses (2000), Academic Press, NY 703-724
6. Blanc S., Lopez-Moya J.-J., Wang R., Garci{dotless}a-Lampasona S., Thornbury D.W., and Pirone T.P. A specific interaction between coat protein and helper component correlates with aphid transmission of a potyvirus. Virology 231 (1997) 141-147
7. Boonham N., Walsh K., Hims M., Preston S., North J., and Barker I. Biological and sequence comparisons of Potato virus Y isolates associated with potato tuber necrotic ringspot disease. Plant Pathol. 51 (2002) 117-126
8. Browning, I., Charlet, K., Chrzanowska, M., Dedic, P., Kerlan, C., Kryszczuk, A., Schubert, J., Varveri, C., Werkman, A. and Wolf, I. 2004. What is PVYNTN? The reaction of potato cultivars to inoculation with a range of PVY isolates. 12th European Assoc. for Potato Res., Virology section meeting, Rennes, France, 2004. pp. 48-50.
9. NTN. J. Phytopathol. 155 (2007) 409-415
10. Chikh Ali M., Maoka T., and Natsuaki K.T. Whole genome sequence and characterization of a novel isolate of PVY inducing tuber necrotic ringspot in potato and leaf mosaic in tobacco. J. Phytopathol. 156 (2008) 413-418
11. N) on Potatoes in the Northwestern United States. Plant Dis. 86 (2002) 1177-11177
12. de Bokx J.A., and Huttinga H. Potato Virus Y. Descriptions of Plant Viruses vol. 242 (No. 37 revised) (1981), Commonw Mycol Inst/Assoc Appl Biol, Kew, Surrey, UK
13. Dougherty W.G., and Carrington J.C. Expression and function of potyviral gene products. Ann. Rev. Phytopathol. 26 (1988) 123-143
14. Edgar R.C. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucl. Acids Res. 32 (2004) 1792-1797
15. In: Fauquet C.M., Mayo M.A., Maniloff J., Desselberger U., and Ball L.A. (Eds). Virus Taxonomy. Eighth Report of the International Committee on Taxonomy of Viruses (2005), Elsevier Academic Press, San Diego, CA, USA
16. N isolates. Arch. Virol. 147 (2002) 363-378
17. N-W variant of Potato virus Y. J. Virol. Methods 125 (2005) 131-136
18. Hall T.A. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp. Series 41 (1999) 95-98
19. Hirata H., Lu X., Yamaji Y., Kagiwada S., Ugaki M., and Namba S. A single silent substitution in the genome of Apple stem grooving virus causes symptom attenuation. J. Gen. Virol. 84 (2003) 2579-2583
20. N isolates of Potato virus Y (PVY). J. Virol. Methods 125 (2005) 83-93
21. Karasev A.V., Meacham T., Hu X., Whitworth J., Gray S.M., Olsen N., and Nolte P. Identification of Potato virus Y strains associated with tuber damage during a recent virus outbreak in potato in Idaho. Plant Dis. 92 (2008) 1371-11371
22. Kasschau K.D., and Carrington J.C. Requirement for HC-Pro processing during genome amplification of tobacco etch potyvirus. Virology 209 (1995) 268-273
23. Kasschau K.D., Cronin S., and Carrington J.C. Genome amplification and long distance movement functions associated with the central domain of tobacco etch potyvirus helper component-proteinase. Virology 228 (1997) 251-262
24. Kasschau K.D., and Carrington J.C. Long-distance movement and replication maintenance functions correlate with silencing suppression activity of potyviral HC-Pro. Virology 285 (2001) 71-81
25. Kerlan, C., 2006. Description of Plant Viruses: Potato virus Y. Association of Applied Biologists, No. 414 (http://www.dpvweb.net/dpv/showdpv.php?dpvno=414).
26. Kerlan C., Tribodet M., Glais L., and Guillet M. Variability of Potato virus Y in potato crops in France. J. Phytopathol. 147 (1999) 643-651
27. Le Romancer M., Kerlan C., and Nedellec M. Biological characterisation of various geographical isolates of potato virus Y inducing superficial necrosis on potato tubers. Plant Pathol. 43 (1994) 138-144
28. Lorenzen J.H., Meacham T., Berger P.H., Shiel P.J., Crosslin J.M., Hamm P.B., and Kopp H. Whole genome characterization of Potato virus Y isolates collected in the western USA and their comparison to isolates from Europe and Canada. Arch. Virol. 151 (2006) 1055-1074
29. Lorenzen J.H., Piche L.M., Gudmestad N.C., Meacham T., and Shiel P. A multiplex PCR assay to characterize Potato virus Y isolates and identify strain mixtures. Plant Dis. 90 (2006) 935-940
30. Lorenzen J., Nolte P., Martin D., Pasche J., and Gudmestad N. NE-11 represents a new strain variant class of Potato virus Y. Arch. Virol. 153 (2008) 517-525
31. Maia I.G., and Bernardi F. Nucleic acid-binding properties of a bacterially expressed potato virus Y helper component-proteinase. J. Gen. Virol. 77 (1996) 869-877
32. N for strains that induce tuber necrotic ring necrosis disease. Am. Potato J. 70 (1993) 827
33. O strain groups. Am. Potato J. 73 (1996) 309-315
34. NTN. Am. Potato J. 73 (1996) 317-323
35. Milne, R.G., (Ed), 1988. The Plant Viruses Volume 4: The Filamentous Plant Viruses. Plenum Press, New York, NY, 440 pp.
36. N by mutation rather than recombination. Virus Genes 26 (2003) 39-47
37. Piche L.M., Singh R.P., Nie X., and Gudmestad N.C. Diversity among Potato virus Y isolates obtained from potatoes grown in the United States. Phytopathology 94 (2004) 1368-1375
38. Plisson C., Drucker M., Blanc S., German-Retana S., Le Gall O., Thomas D., and Bron P. Structural characterization of HC-Pro, a plant virus multifunctional protein. J. Biol. Chem. 278 (2003) 23753-23761
39. Riechmann J.L., Lain S., and Garcia J.A. Highlights and prospects of potyvirus molecular biology. J. Gen. Virol. 73 (1992) 1-16
40. Ruiz-Ferrer V., Boskovic J., Alfonso C., Rivas G., Llorca O., Lopez-Abella D., and Lopez-Moya J.J. Structural analysis of tobacco etch potyvirus HC-Pro oligomers involved in aphid transmission. J. Virol. 79 (2005) 3758-3765
41. Schubert J., Fomitcheva V., and Sztangret-Wisniewska J. Differentiation of Potato virus Y strains using improved sets of diagnostic PCR-primers. J. Virol. Methods 140 (2007) 66-74
42. Singh R.P., McLaren D.L., Nie X., and Singh M. Possible escape of a recombinant isolate of Potato virus Y by serological indexing and methods of its detection. Plant Dis. 87 (2003) 679-685
43. Singh R.P., Valkonen J.P.T., Gray S.M., Boonham N., Jones R.A.C., Kerlan C., and Schubert J. Discussion paper: the naming of Potato virus Y strains infecting potato. Arch. Virol. 153 (2008) 1-13
44. n) in Canada in 1990 and 1991 and scientific basis for eradication of the disease. Can. Plant Dis. Surv. 72 (1992) 113-119
45. Tamura K., Dudley J., Nei M., and Kumar S. MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol. Biol. Evol. 24 (2007) 1596-1599
46. Torrance L., Andreev I.A., Gabrenaite-Verhovskaya R., Cowan G., Mäkinen K., and Taliansky M.E. An unusual structure at one end of potato potyvirus particles. J. Mol. Biol. 357 (2006) 1-8
47. Toth R.L., Pogue G.P., and Chapman S. Improvement of the movement and host range properties of a plant virus vector through DNA shuffling. Plant J. 30 (2002) 593-600
48. N isolates in infected Nicotiana tabacum cv. Xanthi. J. Gen. Virol. 86 (2005) 2101-2105
49. van den Heuvel J.F.J.M., van der Vlugt R.A.A., Verbeek M., de Haan P.T., and Huttinga H. Characteristics of a resistance-breaking isolate of potato virus Y causing potato tuber necrotic ringspot disease. Eur. J. Plant Pathol. 100 (1994) 347-356
50. N by a 3-primer PCR. J. Virol. Methods 71 (1998) 57-68
51. Xu H., Nie J., and De Boer S.H. Differentiation and molecular detection of Canadian necrotic strains of Potato virus Y. Can. J. Plant Pathol. 27 (2005) 125-131