-
1
-
-
0003890119
-
-
2nd ed., W. H. Freeman and Co., New York.
-
Kornberg, A. and Baker, T. (1992) DNA replication, 2nd ed., W. H. Freeman and Co., New York.
-
(1992)
DNA Replication
-
-
Kornberg, A.1
Baker, T.2
-
2
-
-
0141677891
-
Chromosomal replicases as asymmetric dimers: Studies of subunit arrangement and functional consequences
-
DOI 10.1046/j.1365-2958.2003.03645.x
-
McHenry, C. S. (2003) Chromosomal replicases as asymmetric dimers: Studies of subunit arrangement and functional consequences Mol. Microbiol. 49, 1157-1165 (Pubitemid 37153487)
-
(2003)
Molecular Microbiology
, vol.49
, Issue.5
, pp. 1157-1165
-
-
McHenry, C.S.1
-
3
-
-
0023897674
-
DNA polymerase III holoenzyme of Escherichia coli. IV. the holoenzyme is an asymmetric dimer with twin active sites
-
Maki, H., Maki, S., and Kornberg, A. (1988) DNA polymerase III holoenzyme of Escherichia coli. IV. The holoenzyme is an asymmetric dimer with twin active sites J. Biol. Chem. 263, 6570-6578
-
(1988)
J. Biol. Chem.
, vol.263
, pp. 6570-6578
-
-
Maki, H.1
Maki, S.2
Kornberg, A.3
-
4
-
-
0029019805
-
Assembly of a chromosomal replication machine: Two DNA polymerases, a clamp loader, and sliding clamps in one holoenzyme particle. II. Intermediate complex between the clamp loader and its clamp
-
Naktinis, V., Onrust, R., Fang, L., and O'Donnell, M. (1995) Assembly of a chromosomal replication machine: Two DNA polymerases, a clamp loader, and sliding clamps in one holoenzyme particle. II. Intermediate complex between the clamp loader and its clamp J. Biol. Chem. 270, 13358-13365
-
(1995)
J. Biol. Chem.
, vol.270
, pp. 13358-13365
-
-
Naktinis, V.1
Onrust, R.2
Fang, L.3
O'Donnell, M.4
-
5
-
-
22244478079
-
Cellular DNA replicases: Components and dynamics at the replication fork
-
DOI 10.1146/annurev.biochem.73.011303.073859
-
Johnson, A. and O'Donnell, M. (2005) Cellular DNA replicases: Components and dynamics at the replication fork Annu. Rev. Biochem. 74, 283-315 (Pubitemid 40995509)
-
(2005)
Annual Review of Biochemistry
, vol.74
, pp. 283-315
-
-
Johnson, A.1
O'Donnell, M.2
-
6
-
-
0029026635
-
DNA polymerase III holoenzyme: Structure and function of a chromosomal replicating machine
-
Kelman, Z. and O'Donnell, M. (1995) DNA polymerase III holoenzyme: Structure and function of a chromosomal replicating machine Annu. Rev. Biochem. 64, 171-200
-
(1995)
Annu. Rev. Biochem.
, vol.64
, pp. 171-200
-
-
Kelman, Z.1
O'Donnell, M.2
-
7
-
-
79959797260
-
Polymerase switching in response to DNA damage
-
In (Williams, M. C. and Maher, L. J., Eds.) Springer, New York.
-
Ollivierre, J. N., Silva, M. C., Sefcikova, J., and Beuning, P. J. (2010) Polymerase switching in response to DNA damage. In Biophysics of DNA-Protein Interactions: From Single Molecules to Biological Systems (Williams, M. C. and Maher, L. J., Eds.) Springer, New York.
-
(2010)
Biophysics of DNA-Protein Interactions: From Single Molecules to Biological Systems
-
-
Ollivierre, J.N.1
Silva, M.C.2
Sefcikova, J.3
Beuning, P.J.4
-
8
-
-
0022345854
-
The polymerase subunit of DNA polymerase III of Escherichia coli. II. Purification of the α subunit, devoid of nuclease activities
-
Maki, H. and Kornberg, A. (1985) The polymerase subunit of DNA polymerase III of Escherichia coli. II. Purification of the α subunit, devoid of nuclease activities J. Biol. Chem. 260, 12987-12992 (Pubitemid 16209763)
-
(1985)
Journal of Biological Chemistry
, vol.260
, Issue.24
, pp. 12987-12992
-
-
Maki, H.1
Kornberg, A.2
-
9
-
-
0022348244
-
Complete replication of templates by Escherichia coli DNA polymerase III holoenzyme
-
O'Donnell, M. E. and Kornberg, A. (1985) Complete replication of templates by Escherichia coli DNA polymerase III holoenzyme J. Biol. Chem. 260, 12884-12889 (Pubitemid 16230587)
-
(1985)
Journal of Biological Chemistry
, vol.260
, Issue.23
, pp. 12884-12889
-
-
O'Donnell, M.E.1
Kornberg, A.2
-
10
-
-
0025809742
-
Mechanism of the sliding β-clamp of DNA polymerase III holoenzyme
-
Stukenberg, P. T., Studwell-Vaughan, P. S., and O'Donnell, M. (1991) Mechanism of the sliding β-clamp of DNA polymerase III holoenzyme J. Biol. Chem. 266, 11328-11334 (Pubitemid 21906950)
-
(1991)
Journal of Biological Chemistry
, vol.266
, Issue.17
, pp. 11328-11334
-
-
Stukenberg, P.T.1
Studwell-Vaughan, P.S.2
O'Donnell, M.3
-
11
-
-
33745071496
-
Dynamics of loading the Escherichia coli DNA polymerase processivity clamp
-
Bloom, L. B. (2006) Dynamics of loading the Escherichia coli DNA polymerase processivity clamp Crit. Rev. Biochem. Mol. Biol. 41, 179-208
-
(2006)
Crit. Rev. Biochem. Mol. Biol.
, vol.41
, pp. 179-208
-
-
Bloom, L.B.1
-
12
-
-
0035929237
-
Opening of the clamp: An intimate view of an ATP-driven biological machine
-
DOI 10.1016/S0092-8674(01)00498-6
-
Ellison, V. and Stillman, B. (2001) Opening of the clamp: An intimate view of an ATP-driven biological machine Cell 106, 655-660 (Pubitemid 32900657)
-
(2001)
Cell
, vol.106
, Issue.6
, pp. 655-660
-
-
Ellison, V.1
Stillman, B.2
-
13
-
-
77949570096
-
Processivity factor of DNA polymerase and its expanding role in normal and translesion DNA synthesis
-
Zhuang, Z. and Ai, Y. (2010) Processivity factor of DNA polymerase and its expanding role in normal and translesion DNA synthesis Biochim. Biophys. Acta 1804, 1081-1093
-
(2010)
Biochim. Biophys. Acta
, vol.1804
, pp. 1081-1093
-
-
Zhuang, Z.1
Ai, Y.2
-
14
-
-
0042161860
-
Evolutionary clues to DNA polymerase III β clamp structural mechanisms
-
DOI 10.1093/nar/gkg486
-
Neuwald, A. F. (2003) Evolutionary clues to DNA polymerase III β clamp structural mechanisms Nucleic Acids Res. 31, 4503-4516 (Pubitemid 37441811)
-
(2003)
Nucleic Acids Research
, vol.31
, Issue.15
, pp. 4503-4516
-
-
Neuwald, A.F.1
-
15
-
-
33749033347
-
The replication clamp-loading machine at work in the three domains of life
-
DOI 10.1038/nrm2022, PII NRM2022
-
Indiani, C. and O'Donnell, M. (2006) The replication clamp-loading machine at work in the three domains of life Nat. Rev. Mol. Cell Biol. 7, 751-761 (Pubitemid 44450459)
-
(2006)
Nature Reviews Molecular Cell Biology
, vol.7
, Issue.10
, pp. 751-761
-
-
Indiani, C.1
O'Donnell, M.2
-
16
-
-
25444469141
-
Out-of-plane motions in open sliding clamps: Molecular dynamics simulations of eukaryotic and archaeal proliferating cell nuclear antigen
-
DOI 10.1073/pnas.0506430102
-
Kazmirski, S. L., Zhao, Y., Bowman, G. D., O'Donnell, M., and Kuriyan, J. (2005) Out-of-plane motions in open sliding clamps: Molecular dynamics simulations of eukaryotic and archaeal proliferating cell nuclear antigen Proc. Natl. Acad. Sci. U.S.A. 102, 13801-13806 (Pubitemid 41377659)
-
(2005)
Proceedings of the National Academy of Sciences of the United States of America
, vol.102
, Issue.39
, pp. 13801-13806
-
-
Kazmirski, S.L.1
Zhao, Y.2
Bowman, G.D.3
O'Donnell, M.4
Kuriyan, J.5
-
17
-
-
37649016453
-
Structure of a sliding clamp on DNA
-
Georgescu, R. E., Kim, S. S., Yurieva, O., Kuriyan, J., Kong, X. P., and O'Donnell, M. (2008) Structure of a sliding clamp on DNA Cell 132, 43-54
-
(2008)
Cell
, vol.132
, pp. 43-54
-
-
Georgescu, R.E.1
Kim, S.S.2
Yurieva, O.3
Kuriyan, J.4
Kong, X.P.5
O'Donnell, M.6
-
18
-
-
0026717535
-
Three-dimensional structure of the β subunit of E. coli DNA polymerase III holoenzyme: A sliding DNA clamp
-
Kong, X. P., Onrust, R., O'Donnell, M., and Kuriyan, J. (1992) Three-dimensional structure of the β subunit of E. coli DNA polymerase III holoenzyme: A sliding DNA clamp Cell 69, 425-437
-
(1992)
Cell
, vol.69
, pp. 425-437
-
-
Kong, X.P.1
Onrust, R.2
O'Donnell, M.3
Kuriyan, J.4
-
19
-
-
0038455931
-
Flexibility revealed by the 1.85 Å crystal structure of the β sliding-clamp subunit of Escherichia coli DNA polymerase III
-
DOI 10.1107/S0907444903009958
-
Oakley, A. J., Prosselkov, P., Wijffels, G., Beck, J. L., Wilce, M. C., and Dixon, N. E. (2003) Flexibility revealed by the 1.85 Å crystal structure of the β sliding-clamp subunit of Escherichia coli DNA polymerase III Acta Crystallogr. D59, 1192-1199 (Pubitemid 36872355)
-
(2003)
Acta Crystallographica Section D: Biological Crystallography
, vol.59
, Issue.7
, pp. 1192-1199
-
-
Oakley, A.J.1
Prosselkov, P.2
Wijffels, G.3
Beck, J.L.4
Wilce, M.C.J.5
Dixon, N.E.6
-
20
-
-
66249104683
-
Contributions of the individual hydrophobic clefts of the Escherichia coli β sliding clamp to clamp loading, DNA replication and clamp recycling
-
Scouten Ponticelli, S. K., Duzen, J. M., and Sutton, M. D. (2009) Contributions of the individual hydrophobic clefts of the Escherichia coli β sliding clamp to clamp loading, DNA replication and clamp recycling Nucleic Acids Res. 37, 2796-2809
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 2796-2809
-
-
Scouten Ponticelli, S.K.1
Duzen, J.M.2
Sutton, M.D.3
-
21
-
-
34447577855
-
Differential binding of Escherichia coli DNA polymerases to the β-sliding clamp
-
DOI 10.1111/j.1365-2958.2007.05828.x
-
Maul, R. W., Ponticelli, S. K., Duzen, J. M., and Sutton, M. D. (2007) Differential binding of Escherichia coli DNA polymerases to the β-sliding clamp Mol. Microbiol. 65, 811-827 (Pubitemid 47077236)
-
(2007)
Molecular Microbiology
, vol.65
, Issue.3
, pp. 811-827
-
-
Maul, R.W.1
Scouten Ponticelli, S.K.2
Duzen, J.M.3
Sutton, M.D.4
-
22
-
-
20444420519
-
A bipartite polymerase-processivity factor interaction: Only the internal β binding site of the α subunit is required for processive replication by the DNA polymerase III holoenzyme
-
DOI 10.1016/j.jmb.2005.04.065, PII S0022283605004985
-
Dohrmann, P. R. and McHenry, C. S. (2005) A bipartite polymerase-processivity factor interaction: Only the internal β binding site of the α subunit is required for processive replication by the DNA polymerase III holoenzyme J. Mol. Biol. 350, 228-239 (Pubitemid 40805458)
-
(2005)
Journal of Molecular Biology
, vol.350
, Issue.2
, pp. 228-239
-
-
Dohrmann, P.R.1
McHenry, C.S.2
-
23
-
-
0035943399
-
Mechanism of processivity clamp opening by the delta subunit wrench of the clamp loader complex of E. coli DNA polymerase III
-
DOI 10.1016/S0092-8674(01)00462-7
-
Jeruzalmi, D., Yurieva, O., Zhao, Y., Young, M., Stewart, J., Hingorani, M., O'Donnell, M., and Kuriyan, J. (2001) Mechanism of processivity clamp opening by the δ subunit wrench of the clamp loader complex of E. coli DNA polymerase III Cell 106, 417-428 (Pubitemid 32786986)
-
(2001)
Cell
, vol.106
, Issue.4
, pp. 417-428
-
-
Jeruzalmi, D.1
Yurieva, O.2
Zhao, Y.3
Young, M.4
Stewart, J.5
Hingorani, M.6
O'Donnell, M.7
Kuriyan, J.8
-
24
-
-
0348134870
-
Competitive processivity-clamp usage by DNA polymerases during DNA replication and repair
-
DOI 10.1093/emboj/cdg603
-
Lopez de Saro, F. J., Georgescu, R. E., Goodman, M. F., and O'Donnell, M. (2003) Competitive processivity-clamp usage by DNA polymerases during DNA replication and repair EMBO J. 22, 6408-6418 (Pubitemid 37522597)
-
(2003)
EMBO Journal
, vol.22
, Issue.23
, pp. 6408-6418
-
-
Lopez De Saro, F.J.1
Georgescu, R.E.2
Goodman, M.F.3
O'Donnell, M.4
-
25
-
-
33645064547
-
Two processivity clamp interactions differentially alter the dual activities of UmuC
-
Beuning, P. J., Sawicka, D., Barsky, D., and Walker, G. C. (2006) Two processivity clamp interactions differentially alter the dual activities of UmuC Mol. Microbiol. 59, 460-474
-
(2006)
Mol. Microbiol.
, vol.59
, pp. 460-474
-
-
Beuning, P.J.1
Sawicka, D.2
Barsky, D.3
Walker, G.C.4
-
26
-
-
15944400711
-
Mutant forms of the Escherichia coli β sliding clamp that distinguish between its roles in replication and DNA polymerase V-dependent translesion DNA synthesis
-
DOI 10.1111/j.1365-2958.2005.04500.x
-
Sutton, M. D., Duzen, J. M., and Maul, R. W. (2005) Mutant forms of the Escherichia coli β sliding clamp that distinguish between its roles in replication and DNA polymerase V-dependent translesion DNA synthesis Mol. Microbiol. 55, 1751-1766 (Pubitemid 40445211)
-
(2005)
Molecular Microbiology
, vol.55
, Issue.6
, pp. 1751-1766
-
-
Sutton, M.D.1
Duzen, J.M.2
Maul, R.W.3
-
27
-
-
0037019606
-
Pivotal role of the β-clamp in translesion DNA synthesis and mutagenesis in E. coli cells
-
Becherel, O. J., Fuchs, R. P., and Wagner, J. (2002) Pivotal role of the β-clamp in translesion DNA synthesis and mutagenesis in E. coli cells DNA Repair 1, 703-708
-
(2002)
DNA Repair
, vol.1
, pp. 703-708
-
-
Becherel, O.J.1
Fuchs, R.P.2
Wagner, J.3
-
28
-
-
0842281648
-
Identification of specific amino acid residues in the E. coli β processivity clamp involved in interactions with DNA polymerase III, UmuD and UmuD′
-
DOI 10.1016/j.dnarep.2003.11.008
-
Duzen, J. M., Walker, G. C., and Sutton, M. D. (2004) Identification of specific amino acid residues in the E. coli β processivity clamp involved in interactions with DNA polymerase III, UmuD and UmuD′ DNA Repair 3, 301-312 (Pubitemid 38177251)
-
(2004)
DNA Repair
, vol.3
, Issue.3
, pp. 301-312
-
-
Duzen, J.M.1
Walker, G.C.2
Sutton, M.D.3
-
29
-
-
70450198154
-
Distinct β-clamp interactions govern the activities of the y family PolIV DNA polymerase
-
Wagner, J., Etienne, H., Fuchs, R. P., Cordonnier, A., and Burnouf, D. (2009) Distinct β-clamp interactions govern the activities of the Y family PolIV DNA polymerase Mol. Microbiol. 74, 1143-1151
-
(2009)
Mol. Microbiol.
, vol.74
, pp. 1143-1151
-
-
Wagner, J.1
Etienne, H.2
Fuchs, R.P.3
Cordonnier, A.4
Burnouf, D.5
-
30
-
-
0242389787
-
Structural basis for recruitment of translesion DNA polymerase Pol IV/DinB to the β-clamp
-
DOI 10.1093/emboj/cdg568
-
Bunting, K. A., Roe, S. M., and Pearl, L. H. (2003) Structural basis for recruitment of translesion DNA polymerase Pol IV/DinB to the β-clamp EMBO J. 22, 5883-5892 (Pubitemid 37408825)
-
(2003)
EMBO Journal
, vol.22
, Issue.21
, pp. 5883-5892
-
-
Bunting, K.A.1
Roe, S.M.2
Pearl, L.H.3
-
31
-
-
0035949599
-
A universal protein-protein interaction motif in the eubacterial DNA replication and repair systems
-
DOI 10.1073/pnas.191384398
-
Dalrymple, B. P., Kongsuwan, K., Wijffels, G., Dixon, N. E., and Jennings, P. A. (2001) A universal protein-protein interaction motif in the eubacterial DNA replication and repair systems Proc. Natl. Acad. Sci. U.S.A. 98, 11627-11632 (Pubitemid 32928779)
-
(2001)
Proceedings of the National Academy of Sciences of the United States of America
, vol.98
, Issue.20
, pp. 11627-11632
-
-
Dalrymple, B.P.1
Kongsuwan, K.2
Wijffels, G.3
Dixon, N.E.4
Jennings, P.A.5
-
32
-
-
0035375105
-
Mechanism of β clamp opening by the δ subunit of Escherichia coli DNA polymerase III holoenzyme
-
Stewart, J., Hingorani, M. M., Kelman, Z., and O'Donnell, M. (2001) Mechanism of β clamp opening by the δ subunit of Escherichia coli DNA polymerase III holoenzyme J. Biol. Chem. 276, 19182-19189
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 19182-19189
-
-
Stewart, J.1
Hingorani, M.M.2
Kelman, Z.3
O'Donnell, M.4
-
33
-
-
0034602163
-
The δ subunit of DNA polymerase III holoenzyme serves as a sliding clamp unloader in Escherichia coli
-
Leu, F. P., Hingorani, M. M., Turner, J., and O'Donnell, M. (2000) The δ subunit of DNA polymerase III holoenzyme serves as a sliding clamp unloader in Escherichia coli J. Biol. Chem. 275, 34609-34618
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 34609-34618
-
-
Leu, F.P.1
Hingorani, M.M.2
Turner, J.3
O'Donnell, M.4
-
34
-
-
0031018084
-
Probing the non-covalent structure of proteins by amide hydrogen exchange and mass spectrometry
-
DOI 10.1002/(SICI)1096-9888(199702)32:2<135::AID-JMS486>3.0.CO;2-M
-
Smith, D. L., Deng, Y., and Zhang, Z. (1997) Probing the non-covalent structure of proteins by amide hydrogen exchange and mass spectrometry J. Mass Spectrom. 32, 135-146 (Pubitemid 27087380)
-
(1997)
Journal of Mass Spectrometry
, vol.32
, Issue.2
, pp. 135-146
-
-
Smith, D.L.1
Deng, Y.2
Zhang, Z.3
-
35
-
-
70349613463
-
Analysis of protein conformation and dynamics by hydrogen/deuterium exchange MS
-
Engen, J. R. (2009) Analysis of protein conformation and dynamics by hydrogen/deuterium exchange MS Anal. Chem. 81, 7870-7875
-
(2009)
Anal. Chem.
, vol.81
, pp. 7870-7875
-
-
Engen, J.R.1
-
36
-
-
35448956141
-
Hydrogen/deuterium exchange-mass spectrometry: A powerful tool for probing protein structure, dynamics and interactions
-
DOI 10.2174/092986707781745596
-
Tsutsui, Y. and Wintrode, P. L. (2007) Hydrogen/deuterium exchange-mass spectrometry: A powerful tool for probing protein structure, dynamics and interactions Curr. Med. Chem. 14, 2344-2358 (Pubitemid 47618043)
-
(2007)
Current Medicinal Chemistry
, vol.14
, Issue.22
, pp. 2344-2358
-
-
Tsutsui, Y.1
Wintrode, P.L.2
-
37
-
-
0028828945
-
Escherichia coli expression vectors containing a protein kinase recognition motif, His6-tag and hemagglutinin epitope
-
Kelman, Z., Yao, N., and O'Donnell, M. (1995) Escherichia coli expression vectors containing a protein kinase recognition motif, His6-tag and hemagglutinin epitope Gene 166, 177-178
-
(1995)
Gene
, vol.166
, pp. 177-178
-
-
Kelman, Z.1
Yao, N.2
O'Donnell, M.3
-
38
-
-
0027671977
-
Overproduction and purification of sigma 32, the Escherichia coli heat shock transcription factor
-
Nguyen, L. H., Jensen, D. B., and Burgess, R. R. (1993) Overproduction and purification of sigma 32, the Escherichia coli heat shock transcription factor Protein Expression Purif. 4, 425-433
-
(1993)
Protein Expression Purif.
, vol.4
, pp. 425-433
-
-
Nguyen, L.H.1
Jensen, D.B.2
Burgess, R.R.3
-
39
-
-
0027529263
-
Determination of amide hydrogen exchange by mass spectrometry: A new tool for protein structure elucidation
-
Zhang, Z. and Smith, D. L. (1993) Determination of amide hydrogen exchange by mass spectrometry: A new tool for protein structure elucidation Protein Sci. 2, 522-531 (Pubitemid 23119303)
-
(1993)
Protein Science
, vol.2
, Issue.4
, pp. 522-531
-
-
Zhang, Z.1
Smith, D.L.2
-
40
-
-
33644761306
-
Hydrogen exchange mass spectrometry for the analysis of protein dynamics
-
Wales, T. E. and Engen, J. R. (2006) Hydrogen exchange mass spectrometry for the analysis of protein dynamics Mass Spectrom. Rev. 25, 158-170
-
(2006)
Mass Spectrom. Rev.
, vol.25
, pp. 158-170
-
-
Wales, T.E.1
Engen, J.R.2
-
41
-
-
51549121010
-
High-speed and high-resolution UPLC separation at zero degrees Celsius
-
Wales, T. E., Fadgen, K. E., Gerhardt, G. C., and Engen, J. R. (2008) High-speed and high-resolution UPLC separation at zero degrees Celsius Anal. Chem. 80, 6815-6820
-
(2008)
Anal. Chem.
, vol.80
, pp. 6815-6820
-
-
Wales, T.E.1
Fadgen, K.E.2
Gerhardt, G.C.3
Engen, J.R.4
-
42
-
-
63049084861
-
The detection, correlation, and comparison of peptide precursor and product ions from data independent LC-MS with data dependant LC-MS/MS
-
Geromanos, S. J., Vissers, J. P., Silva, J. C., Dorschel, C. A., Li, G. Z., Gorenstein, M. V., Bateman, R. H., and Langridge, J. I. (2009) The detection, correlation, and comparison of peptide precursor and product ions from data independent LC-MS with data dependant LC-MS/MS Proteomics 9, 1683-1695
-
(2009)
Proteomics
, vol.9
, pp. 1683-1695
-
-
Geromanos, S.J.1
Vissers, J.P.2
Silva, J.C.3
Dorschel, C.A.4
Li, G.Z.5
Gorenstein, M.V.6
Bateman, R.H.7
Langridge, J.I.8
-
43
-
-
33751337111
-
Semi-Automated Data Processing of Hydrogen Exchange Mass Spectra Using HX-Express
-
DOI 10.1016/j.jasms.2006.07.025, PII S1044030506006891
-
Weis, D. D., Engen, J. R., and Kass, I. J. (2006) Semi-automated data processing of hydrogen exchange mass spectra using HX-Express J. Am. Soc. Mass Spectrom. 17, 1700-1703 (Pubitemid 44809951)
-
(2006)
Journal of the American Society for Mass Spectrometry
, vol.17
, Issue.12
, pp. 1700-1703
-
-
Weis, D.D.1
Engen, J.R.2
Kass, I.J.3
-
44
-
-
0020855355
-
Hydrogen exchange and structural dynamics of proteins and nucleic acids
-
Englander, S. W. and Kallenbach, N. R. (1983) Hydrogen exchange and structural dynamics of proteins and nucleic acids Q. Rev. Biophys. 16, 521-655
-
(1983)
Q. Rev. Biophys.
, vol.16
, pp. 521-655
-
-
Englander, S.W.1
Kallenbach, N.R.2
-
45
-
-
64849114588
-
Characterization of IgG1 conformation and conformational dynamics by hydrogen/deuterium exchange mass spectrometry
-
Houde, D., Arndt, J., Domeier, W., Berkowitz, S., and Engen, J. R. (2009) Characterization of IgG1 conformation and conformational dynamics by hydrogen/deuterium exchange mass spectrometry Anal. Chem. 81, 2644-2651
-
(2009)
Anal. Chem.
, vol.81
, pp. 2644-2651
-
-
Houde, D.1
Arndt, J.2
Domeier, W.3
Berkowitz, S.4
Engen, J.R.5
-
46
-
-
0033593247
-
Defining protein ensembles with native-state NH exchange: Kinetics of interconversion and cooperative units from combined NMR and MS analysis
-
DOI 10.1006/jmbi.1998.2338
-
Arrington, C. B., Teesch, L. M., and Robertson, A. D. (1999) Defining protein ensembles with native-state NH exchange: Kinetics of interconversion and cooperative units from combined NMR and MS analysis J. Mol. Biol. 285, 1265-1275 (Pubitemid 29054331)
-
(1999)
Journal of Molecular Biology
, vol.285
, Issue.3
, pp. 1265-1275
-
-
Arrington, C.B.1
Teesch, L.M.2
Robertson, A.D.3
-
47
-
-
0033655078
-
Investigating the higher order structure of proteins. Hydrogen exchange, proteolytic fragmentation, and mass spectrometry
-
Engen, J. R. and Smith, D. L. (2000) Investigating the higher order structure of proteins. Hydrogen exchange, proteolytic fragmentation, and mass spectrometry Methods Mol. Biol. 146, 95-112
-
(2000)
Methods Mol. Biol.
, vol.146
, pp. 95-112
-
-
Engen, J.R.1
Smith, D.L.2
-
48
-
-
33749326831
-
Identification and Characterization of EX1 Kinetics in H/D Exchange Mass Spectrometry by Peak Width Analysis
-
DOI 10.1016/j.jasms.2006.05.014, PII S1044030506005393
-
Weis, D. D., Wales, T. E., Engen, J. R., Hotchko, M., and Ten Eyck, L. F. (2006) Identification and characterization of EX1 kinetics in H/D exchange mass spectrometry by peak width analysis J. Am. Soc. Mass Spectrom. 17, 1498-1509 (Pubitemid 44635272)
-
(2006)
Journal of the American Society for Mass Spectrometry
, vol.17
, Issue.11
, pp. 1498-1509
-
-
Weis, D.D.1
Wales, T.E.2
Engen, J.R.3
Hotchko, M.4
Ten Eyck, L.F.5
-
49
-
-
33750320427
-
Hydrogen Exchange and Mass Spectrometry: A Historical Perspective
-
DOI 10.1016/j.jasms.2006.06.006, PII S1044030506005514
-
Englander, S. W. (2006) Hydrogen exchange and mass spectrometry: A historical perspective J. Am. Soc. Mass Spectrom. 17, 1481-1489 (Pubitemid 44635273)
-
(2006)
Journal of the American Society for Mass Spectrometry
, vol.17
, Issue.11
, pp. 1481-1489
-
-
Englander, S.W.1
-
50
-
-
1642535628
-
EX1 Hydrogen Exchange and Protein Folding
-
DOI 10.1021/bi035943y
-
Ferraro, D. M., Lazo, N. D., and Robertson, A. D. (2004) EX1 hydrogen exchange and protein folding Biochemistry 43, 587-594 (Pubitemid 38114045)
-
(2004)
Biochemistry
, vol.43
, Issue.3
, pp. 587-594
-
-
Ferraro, D.M.1
Robertson, A.D.2
-
51
-
-
0027770910
-
Detection of transient protein folding populations by mass spectrometry
-
Miranker, A., Robinson, C. V., Radford, S. E., Aplin, R. T., and Dobson, C. M. (1993) Detection of transient protein folding populations by mass spectrometry Science 262, 896-900 (Pubitemid 24014076)
-
(1993)
Science
, vol.262
, Issue.5135
, pp. 896-900
-
-
Miranker, A.1
Robinson, C.V.2
Radford, S.E.3
Aplin, R.T.4
Dobson, C.M.5
-
52
-
-
0017642101
-
Determination of deoxyribonucleic acid replication time in exponentially growing Escherichia coli B/r
-
Churchward, G. and Bremer, H. (1977) Determination of deoxyribonucleic acid replication time in exponentially growing Escherichia coli B/r J. Bacteriol. 130, 1206-1213 (Pubitemid 8124013)
-
(1977)
Journal of Bacteriology
, vol.130
, Issue.3
, pp. 1206-1213
-
-
Churchward, G.1
Bremer, H.2
-
53
-
-
2942562192
-
The dynamic processivity of the T4 DNA polymerase during replication
-
DOI 10.1073/pnas.0402625101
-
Yang, J., Zhuang, Z., Roccasecca, R. M., Trakselis, M. A., and Benkovic, S. J. (2004) The dynamic processivity of the T4 DNA polymerase during replication Proc. Natl. Acad. Sci. U.S.A. 101, 8289-8294 (Pubitemid 38736568)
-
(2004)
Proceedings of the National Academy of Sciences of the United States of America
, vol.101
, Issue.22
, pp. 8289-8294
-
-
Yang, J.1
Zhuang, Z.2
Roccasecca, R.M.3
Trakselis, M.A.4
Benkovic, S.J.5
-
54
-
-
77953607331
-
The mechanical properties of PCNA: Implications for the loading and function of a DNA sliding clamp
-
Adelman, J. L., Chodera, J. D., Kuo, I. F., Miller, T. F., III, and Barsky, D. (2010) The mechanical properties of PCNA: Implications for the loading and function of a DNA sliding clamp Biophys. J. 98, 3062-3069
-
(2010)
Biophys. J.
, vol.98
, pp. 3062-3069
-
-
Adelman, J.L.1
Chodera, J.D.2
Kuo, I.F.3
Barsky, D.4
-
55
-
-
4944231970
-
On the solution structure of the T4 sliding clamp (gp45)
-
DOI 10.1021/bi048349c
-
Millar, D., Trakselis, M. A., and Benkovic, S. J. (2004) On the solution structure of the T4 sliding clamp (gp45) Biochemistry 43, 12723-12727 (Pubitemid 39331791)
-
(2004)
Biochemistry
, vol.43
, Issue.40
, pp. 12723-12727
-
-
Millar, D.1
Trakselis, M.A.2
Benkovic, S.J.3
-
56
-
-
0346654081
-
Structural and Biochemical Analysis of Sliding Clamp/Ligand Interactions Suggest a Competition between Replicative and Translesion DNA Polymerases
-
DOI 10.1016/j.jmb.2003.11.049
-
Burnouf, D. Y., Olieric, V., Wagner, J., Fujii, S., Reinbolt, J., Fuchs, R. P., and Dumas, P. (2004) Structural and biochemical analysis of sliding clamp/ligand interactions suggest a competition between replicative and translesion DNA polymerases J. Mol. Biol. 335, 1187-1197 (Pubitemid 38077239)
-
(2004)
Journal of Molecular Biology
, vol.335
, Issue.5
, pp. 1187-1197
-
-
Burnouf, D.Y.1
Olieric, V.2
Wagner, J.3
Fujii, S.4
Reinbolt, J.5
Fuchs, R.P.P.6
Dumas, P.7
-
57
-
-
45549085521
-
A Dynamic Polymerase Exchange with Escherichia coli DNA Polymerase IV Replacing DNA Polymerase III on the Sliding Clamp
-
Furukohri, A., Goodman, M. F., and Maki, H. (2008) A Dynamic Polymerase Exchange with Escherichia coli DNA Polymerase IV Replacing DNA Polymerase III on the Sliding Clamp J. Biol. Chem. 283, 11260-11269
-
(2008)
J. Biol. Chem.
, vol.283
, pp. 11260-11269
-
-
Furukohri, A.1
Goodman, M.F.2
Maki, H.3
-
58
-
-
33646906556
-
A non-cleavable UmuD variant that acts as a UmuD′ mimic
-
DOI 10.1074/jbc.M511101200
-
Beuning, P. J., Simon, S. M., Zemla, A., Barsky, D., and Walker, G. C. (2006) A non-cleavable UmuD variant that acts as a UmuD′ mimic J. Biol. Chem. 281, 9633-9640 (Pubitemid 43869906)
-
(2006)
Journal of Biological Chemistry
, vol.281
, Issue.14
, pp. 9633-9640
-
-
Beuning, P.J.1
Simon, S.M.2
Zemla, A.3
Barsky, D.4
Walker, G.C.5
-
59
-
-
0035943342
-
Crystal structure of the processivity clamp loader gamma (γ) complex of E. coli DNA polymerase III
-
DOI 10.1016/S0092-8674(01)00463-9
-
Jeruzalmi, D., O'Donnell, M., and Kuriyan, J. (2001) Crystal structure of the processivity clamp loader γ complex of E. coli DNA polymerase III Cell 106, 429-441 (Pubitemid 32786987)
-
(2001)
Cell
, vol.106
, Issue.4
, pp. 429-441
-
-
Jeruzalmi, D.1
O'Donnell, M.2
Kuriyan, J.3
-
60
-
-
0035861654
-
Interplay of clamp loader subunits in opening the β sliding clamp of Escherichia coli DNA polymerase III holoenzyme
-
Leu, F. P. and O'Donnell, M. (2001) Interplay of clamp loader subunits in opening the β sliding clamp of Escherichia coli DNA polymerase III holoenzyme J. Biol. Chem. 276, 47185-47194
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 47185-47194
-
-
Leu, F.P.1
O'Donnell, M.2
-
61
-
-
0033081486
-
The internal workings of a DNA polymerase clamp-loading machine
-
DOI 10.1093/emboj/18.3.771
-
Turner, J., Hingorani, M. M., Kelman, Z., and O'Donnell, M. (1999) The internal workings of a DNA polymerase clamp-loading machine EMBO J. 18, 771-783 (Pubitemid 29057262)
-
(1999)
EMBO Journal
, vol.18
, Issue.3
, pp. 771-783
-
-
Turner, J.1
Hingorani, M.M.2
Kelman, Z.3
O'Donnell, M.4
-
62
-
-
0034816941
-
A sliding clamp monkey wrench
-
DOI 10.1038/nsb1001-829
-
Bloom, L. B. and Goodman, M. F. (2001) A sliding clamp monkey wrench Nat. Struct. Biol. 8, 829-831 (Pubitemid 32923596)
-
(2001)
Nature Structural Biology
, vol.8
, Issue.10
, pp. 829-831
-
-
Bloom, L.B.1
Goodman, M.F.2
-
63
-
-
53149086698
-
Motion of a DNA sliding clamp observed by single molecule fluorescence spectroscopy
-
Laurence, T. A., Kwon, Y., Johnson, A., Hollars, C. W., O'Donnell, M., Camarero, J. A., and Barsky, D. (2008) Motion of a DNA sliding clamp observed by single molecule fluorescence spectroscopy J. Biol. Chem. 283, 22895-22906
-
(2008)
J. Biol. Chem.
, vol.283
, pp. 22895-22906
-
-
Laurence, T.A.1
Kwon, Y.2
Johnson, A.3
Hollars, C.W.4
O'Donnell, M.5
Camarero, J.A.6
Barsky, D.7
-
64
-
-
79951996226
-
Reduced stability and increased dynamics in the human Proliferating Cell Nuclear Antigen (PCNA) relative to the yeast homolog
-
e16600.
-
De Biasio, A., Sánchez, R., Prieto, J., Villate, M., Campos-Olivas, R., and Blanco, F. J. (2011) Reduced stability and increased dynamics in the human Proliferating Cell Nuclear Antigen (PCNA) relative to the yeast homolog. PLoS ONE 6, e16600.
-
(2011)
PLoS ONE 6
-
-
De Biasio, A.1
Sánchez, R.2
Prieto, J.3
Villate, M.4
Campos-Olivas, R.5
Blanco, F.J.6
|