Inducible site-selective bottom-up assembly of virus-derived nanotube arrays on RNA-equipped wafers

ACS Nano

Volumn 5, Issue 6, 2011, Pages 4512-4520

  Mueller, Anna ^a   Eber, Fabian J ^a   Azucena, Carlos ^b   Petershans, Andre ^b   Bittner, Alexander M ^c,d   Gliemann, Hartmut ^b   Jeske, Holger ^a   Wege, Christina ^a  

^a UNIVERSITY OF STUTTGART   (Germany)

^b KARLSRUHE INSTITUTE OF TECHNOLOGY   (Germany)

^c CIC NANOGUNE   (Spain)

^d BASQUE FOUNDATION FOR SCIENCE   (Spain)

Author keywords

biotemplate; nanotube array; polymer blend lithography; Si wafer; TMV like particles .bottom up assembly

Indexed keywords

3D ARRAYS; BIOTEMPLATE; BIOTEMPLATES; COAT PROTEINS; EXPERIMENTAL VERIFICATION; IN-SITU; IN-VITRO; MICROMETER SCALE; MINIATURIZED DEVICES; NANOTUBE ARRAY; NANOTUBE ARRAYS; PLANT VIRUS; PRODUCTION ROUTE; SI WAFER; SITE SELECTIVE; SOLID SURFACE; TMV-LIKE PARTICLES .BOTTOM-UP ASSEMBLY; TOBACCO MOSAIC VIRUS;

BIODEGRADATION; BLENDING; NANOTUBES; SELF ASSEMBLY; SEMICONDUCTING SILICON COMPOUNDS; SILICON WAFERS; VIRUSES;

RNA;

ALDEHYDE; DNA; NANOTUBE; NUCLEOPROTEIN; POLY(METHYL METHACRYLATE); POLYMER; POLYSTYRENE DERIVATIVE; RNA; RNA LIGASE; SILICON; SILICON DIOXIDE;

ARTICLE; ATOMIC FORCE MICROSCOPY; BIOTECHNOLOGY; CHEMICAL MODEL; CHEMISTRY; CONFORMATION; METABOLISM; METHODOLOGY; NANOTECHNOLOGY; TOBACCO MOSAIC VIRUS;

ALDEHYDES; BIOTECHNOLOGY; DNA; MICROSCOPY, ATOMIC FORCE; MODELS, CHEMICAL; MOLECULAR CONFORMATION; NANOTECHNOLOGY; NANOTUBES; NUCLEOPROTEINS; POLYMERS; POLYMETHYL METHACRYLATE; POLYSTYRENES; RNA; RNA LIGASE (ATP); SILICON; SILICON DIOXIDE; TOBACCO MOSAIC VIRUS;

EID: 79959782715     PISSN: 19360851     EISSN: 1936086X     Source Type: Journal    
DOI: 10.1021/nn103557s     Document Type: Article

References (62)

1. Alivisatos, P. The Use of Nanocrystals in Biological Detection Nat. Biotechnol. 2004, 22, 47-52 (Pubitemid 38057955)
2. Mann, S. Self-Assembly and Transformation of Hybrid Nano-objects and Nanostructures under Equilibrium and Non-equilibrium Conditions Nat. Mater. 2009, 8, 781-792
3. Wang, L.; Montagne, F.; Hoffmann, P.; Heinzelmann, H.; Pugin, R. Hierarchical Positioning of Gold Nanoparticles into Periodic Arrays Using Block Copolymer Nanoring Templates J. Colloid Interface Sci. 2011, 356, 496-504
4. Erickson, D.; Mandal, S.; Yang, A. H.; Cordovez, B. Nanobiosensors: Optofluidic, Electrical and Mechanical Approaches to Biomolecular Detection at the Nanoscale Microfluid. Nanofluid. 2008, 4, 33-52 (Pubitemid 350168049)
5. Lewandowski, D. Genus Tobamovirus. In Virus Taxonomy. 8th Report of the International Committee on Taxonomy of Viruses; Fauquet, C. M.; Mayo, M. A.; Maniloff, J.; Desselberger, U.; Ball, L. A., Eds.; Elsevier/Academic Press: London, 2005; pp 1009-1014.
6. Li, K.; Nguyen, H. G.; Lu, X.; Wang, Q. Viruses and Their Potential in Bioimaging and Biosensing Applications Analyst 2010, 135, 21-27
7. Young, M.; Willits, D.; Uchida, M.; Douglas, T. Plant Viruses as Biotemplates for Materials and Their Use in Nanotechnology Annu. Rev. Phytopathol. 2008, 46, 361-384
8. Gerasopoulos, K.; McCarthy, M.; Banerjee, P.; Fan, X.; Culver, J. N.; Ghodssi, R. Biofabrication Methods for the Patterned Assembly and Synthesis of Viral Nanotemplates Nanotechnology 2010, 21, 055304-055311
9. Soto, C. M.; Ratna, B. R. Virus Hybrids as Nanomaterials for Biotechnology Curr. Opin. Biotechnol. 2010, 21, 426-438
10. Mao, C.; Liu, A.; Cao, B. Virus-Based Chemical and Biological Sensing Angew. Chem., Int. Ed. 2009, 48, 6790-6810
11. Wu, Z.; Mueller, A.; Degenhard, S.; Ruff, S. E.; Geiger, F.; Bittner, A.; Wege, C.; Krill, C., III. Enhancing the Magnetoviscosity of Ferrofluids by the Addition of Biological Nanotubes ACS Nano 2010, 4, 4531-4538
12. Wu, Z.; Zierold, R.; Mueller, A.; Ruff, S. E.; Ma, C.; Khan, A. A.; Geiger, F.; Sommer, B. A.; Knez, M.; Nielsch, K.; Bittner, A. M.; Wege, C.; Krill, C., III. Preparation and Magnetoviscosity of Nanotube Ferrofluids by Viral Scaffolding and ALD on Porous Templates Phys. Status Solidi B 2010, 247, 2412-2423
13. Butler, P. J. Self-Assembly of Tobacco Mosaic Virus: The Role of an Intermediate Aggregate in Generating Both Specificity and Speed Philos. Trans. R. Soc. London, Ser. B 1999, 354, 537-550
14. Lauffer, M. A. Entropy-Driven Processes in Biology; Springer-Verlag: Heidelberg, 1975; Vol. 20.
15. Balci, S.; Noda, K.; Bittner, A. M.; Kadri, A.; Wege, C.; Jeske, H.; Kern, K. Self-Assembly of Metal-Virus Nanodumbbells Angew. Chem., Int. Ed. 2007, 46, 3149-3151 (Pubitemid 46973538)
16. Knez, M.; Sumser, M.; Bittner, A. M.; Wege, C.; Jeske, H.; Martin, T. P.; Kern, K. Spatially Selective Nucleation of Metal Clusters on the Tobacco Mosaic Virus Adv. Funct. Mater. 2004, 14, 116-124
17. Lim, J.-S.; Kim, S.-M.; Lee, S.-Y.; Stach, E. A.; Culver, J. N.; Harris, M. T. Quantitative Study of Au(III) and Pd(II) Ion Biosorption on Genetically Engineered Tobacco Mosaic Virus J. Colloid Interface Sci. 2010, 342, 455-461
18. Smith, M. L.; Lindbo, J. A.; Dillard-Telm, S.; Brosio, P. M.; Lasnik, A. B.; McCormick, A. A.; Nguyen, L. V.; Palmer, K. E. Modified Tobacco Mosaic Virus Particles as Scaffolds for Display of Protein Antigens for Vaccine Applications Virology 2006, 348, 475-488
19. Dedeo, M. T.; Duderstadt, K. E.; Berger, J. M.; Francis, M. B. Nanoscale Protein Assemblies from a Circular Permutant of the Tobacco Mosaic Virus Nano Lett. 2010, 10, 181-186
20. Górzny, M.; Walton, A. S.; Evans, S. D. Synthesis of High-Surface-Area Platinum Nanotubes Using a Viral Template Adv. Funct. Mater. 2010, 20, 1295-1300
21. Kobayashi, M.; Seki, M.; Tabata, H.; Watanabe, Y.; Yamashita, I. Fabrication of Aligned Magnetic Nanoparticles Using Tobamoviruses Nano Lett. 2010, 10, 773-776
22. Frolova, O. Y.; Petrunia, I. V.; Komarova, T. V.; Kosorukov, V. S.; Sheval, E. V.; Gleba, Y. Y.; Dorokhov, Y. L. Trastuzumab-Binding Peptide Display by Tobacco Mosaic Virus Virology 2010, 407, 7-13
23. Kadri, A.; Maiss, E.; Amsharov, N.; Bittner, A. M.; Balci, S.; Kern, K.; Jeske, H.; Wege, C. Engineered Tobacco Mosaic Virus Mutants with Distinct Physical Characteristics in Planta and Enhanced Metallization Properties Virus Res. 2011, 157, 35-46
24. Knez, M.; Sumser, M. P.; Bittner, A. M.; Wege, C.; Jeske, H.; Hoffmann, D. M.; Kuhnke, K.; Kern, K. Binding the Tobacco Mosaic Virus to Inorganic Surfaces Langmuir 2004, 20, 441-447
25. Royston, E.; Ghosh, A.; Kofinas, P.; Harris, M. T.; Culver, J. N. Self-Assembly of Virus-Structured High Surface Area Nanomaterials and Their Application as Battery Electrodes Langmuir 2008, 24, 906-912 (Pubitemid 351270961)
26. Steinmetz, N. F.; Bock, E.; Richter, R. P.; Spatz, J. P.; Lomonossoff, G. P.; Evans, D. J. Assembly of Multilayer Arrays of Viral Nanoparticles via Biospecific Recognition: A Quartz Crystal Microbalance with Dissipation Monitoring Study Biomacromolecules 2008, 9, 456-462 (Pubitemid 351298463)
27. Balci, S.; Leinberger, D. M.; Knez, M.; Bittner, A. M.; Boes, F.; Kadri, A.; Wege, C.; Jeske, H.; Kern, K. Printing and Aligning Mesoscale Patterns of Tobacco Mosaic Viruses on Surfaces Adv. Mater. 2008, 20, 2195-2200
28. Yi, H.; Rubloff, G. W.; Culver, J. N. TMV Microarrays: Hybridization-Based Assembly of DNA-Programmed Viral Nanotemplates Langmuir 2007, 23, 2663-2667 (Pubitemid 46383685)
29. Chen, X.; Gerasopoulos, K.; Guo, J.; Brown, A.; Wang, C.; Ghodssi, R.; Culver, J. N. Virus-Enabled Silicon Anode for Lithium-Ion Batteries ACS Nano 2010, 4, 5366-5372
30. Cheung, C. L.; Camarero, J. A.; Woods, B. W.; Lin, T.; Johnson, J. E.; De Yoreo, J. J. Fabrication of Assembled Virus Nanostructures on Templates of Chemoselective Linkers Formed by Scanning Probe Nanolithography J. Am. Chem. Soc. 2003, 125, 6848-6849 (Pubitemid 36682766)
31. Yoo, P. J.; Nam, K. T.; Qi, J.; Lee, S. K.; Park, J.; Belcher, A. M.; Hammond, P. T. Spontaneous Assembly of Viruses on Multilayered Polymer Surfaces Nat. Mater. 2006, 5, 234-240 (Pubitemid 43320640)
32. Tan, W. S.; Lewis, C. L.; Horelik, N. E.; Pregibon, D. C.; Doyle, P. S.; Yi, H. Hierarchical Assembly of Viral Nanotemplates with Encoded Microparticles via Nucleic Acid Hybridization Langmuir 2008, 24, 12483-12488
33. Chen, X.; Gerasopoulos, K.; Guo, J.; Brown, A.; Ghodssi, R.; Culver, J. N.; Wang, C. High Rate Performance of Virus Enabled 3d N-Type Si Anodes for Lithium-Ion Batteries. Electrochim. Acta 2011, DOI: 10.1016/j.electacta.2011.03. 037.
34. Yi, H.; Nisar, S.; Lee, S. Y.; Powers, M. A.; Bentley, W. E.; Payne, G. F.; Ghodssi, R.; Rubloff, G. W.; Harris, M. T.; Culver, J. N. Patterned Assembly of Genetically Modified Viral Nanotemplates via Nucleic Acid Hybridization Nano Lett. 2005, 5, 1931-1936 (Pubitemid 41546316)
35. Feng, J.; Gao, C.; Wang, B.; Shen, J. Co-patterning Chitosan and Bovine Serum Albumin on an Aldehyde-Enriched Glass Substrate by Microcontact Printing Thin Solid Films 2004, 460, 286-290
36. Berlinger, A.; Gliemann, H.; Barczewski, M.; Durigon, P. E. R.; Siqueira Petri, D. F.; Schimmel, T. Influence of Sulphonation on Polymer and Polymer Blend Surfaces Studied by Atomic Force Microscopy Surf. Interface Anal. 2001, 32, 144-147
37. Gliemann, H.; Almeida, A. T.; Freitas, D.; Petri, S.; Schimmel, T. Nanostructure Formation in Polymer Thin Films Influenced by Humidity Surf. Interface Anal. 2007, 39, 1-8 (Pubitemid 46166777)
38. Tanaka, K.; Takahara, A.; Kajiyama, T. Film Thickness Dependence of the Surface Structure of Immiscible Polystyrene/Poly(methyl methacrylate) Blends Macromolecules 1996, 29, 3232-3239 (Pubitemid 126527412)
39. Cui, L.; Ding, Y.; Li, X.; Wang, Z.; Han, Y. Solvent and Polymer Concentration Effects on the Suface Morphology Evolution of Immiscible Polystyrene/Poly(methylmethacrylate) Blends Thin Solid Films 2004, 515, 2038-3048
40. Walheim, S.; Boltau, M.; Mlynek, J.; Krausch, G.; Steiner, U. Structure Formation via Polymer Demixing in Spin-Cast Films Macromolecules 1997, 30, 4995-5003 (Pubitemid 127574318)
41. Mueller, A.; Kadri, A.; Jeske, H.; Wege, C. In Vitro Assembly of Tobacco Mosaic Virus Coat Protein Variants Derived from Fission Yeast Expression Clones or Plants J. Virol. Methods 2010, 166, 77-85
42. Wittmann, C.; del Campo, A.; Bruce, I. J. Immobilisation of DNA on Chips I. In Topics in Current Chemistry; Wittmann, C., Ed.; Springer: Berlin, 2005; Vol. 260.
43. Britt, D. W.; Buijs, J.; Hlady, V. Tobacco Mosaic Virus Adsorption on Self-Assembled and Langmuir-Blodgett Monolayers Studied by TIRF and SFM Thin Solid Films 1998, 327-329, 824-828 (Pubitemid 128635794)
44. Dubrovin, E.; Kirikova, M.; Novikov, V.; Drygin, Y.; Yaminsky, I. Study of the Peculiarities of Adhesion of Tobacco Mosaic Virus by Atomic Force Microscopy Colloid J. 2004, 66, 673-678 (Pubitemid 40337156)
45. Minton, A. P. Implications of Macromolecular Crowding for Protein Assembly Curr. Opin. Struct. Biol. 2000, 10, 34-39 (Pubitemid 30099324)
46. Pirrung, M. C. How to Make a DNA Chip Angew. Chem., Int. Ed. 2002, 41, 1276-1289 (Pubitemid 34437410)
47. Zammatteo, N.; Jeanmart, L.; Hamels, S.; Courtois, S.; Louette, P.; Hevesi, L.; Remacle, J. Comparison between Different Strategies of Covalent Attachment of DNA to Glass Surfaces To Build DNA Microarrays Anal. Biochem. 2000, 280, 143-150 (Pubitemid 30210823)
48. Persson, T.; Willkomm, D. K.; Hartmann, R. K. T4 RNA Ligase. In Handbook of RNA Chemistry; Hartmann, R. K.; Bindereif, A.; Schön, A.; Westhof, E., Eds.; Wiley-VCH Verlag GmbH: Weinheim, Germany, 2008; pp 53-74.
49. Bendahmane, M.; Koo, M.; Karrer, E.; Beachy, R. N. Display of Epitopes on the Surface of Tobacco Mosaic Virus: Impact of Charge and Isoelectric Point of the Epitope on Virus-Host Interactions J. Mol. Biol. 1999, 290, 9-20 (Pubitemid 29308572)
50. Zaitlin, M. Tobacco Mosaic Virus AAB Descr. Plant Viruses 2000, 370, 1-13
51. Suci, P. A.; Klem, M. T.; Douglas, T.; Young, M. Influence of Electrostatic Interactions on the Surface Adsorption of a Viral Protein Cage Langmuir 2005, 21, 8686-8693 (Pubitemid 41396625)
52. Chen, I. J.; Eckstein, E. C.; Lindner, E. Computation of Transient Flow Rates in Passive Pumping Micro-Fluidic Systems Lab Chip 2009, 9, 107-114
53. Gossett, D. R.; Weaver, W. M.; Mach, A. J.; Hur, S. C.; Tse, H. T.; Lee, W.; Amini, H.; Di Carlo, D. Label-Free Cell Separation and Sorting in Microfluidic Systems Anal. Bioanal. Chem. 2010, 397, 3249-3267
54. Liu, K.-K.; Wu, R.-G.; Chuang, Y.-J.; Khoo, H. S.; Huang, S.-H.; Tseng, F.-G. Microfluidic Systems for Biosensing Sensors 2010, 10, 6623-6661
55. McCormick, A. A.; Palmer, K. E. Genetically Engineered Tobacco Mosaic Virus as Nanoparticle Vaccines Expert Rev. Vaccines 2008, 7, 33-41 (Pubitemid 351357965)
56. Klug, A. The Tobacco Mosaic Virus Particle: Structure and Assembly Philos. Trans. R. Soc. London, Ser. B 1999, 354, 531-535
57. Nam, Y. S.; Magyar, A. P.; Lee, D.; Kim, J. W.; Yun, D. S.; Park, H.; Pollom, T. S., Jr.; Weitz, D. A.; Belcher, A. M. Biologically Templated Photocatalytic Nanostructures for Sustained Light-Driven Water Oxidation Nat. Nanotechnol. 2010, 5, 340-344
58. Manocchi, A. K.; Horelik, N. E.; Lee, B.; Yi, H. Simple, Readily Controllable Palladium Nanoparticle Formation on Surface-Assembled Viral Nanotemplates Langmuir 2010, 26, 3670-3677
59. Geldhauser, T.; Walheim, S.; Schimmel, T.; Leiderer, P.; Boneberg, J. Influence of the Relative Humidity on the Demixing of Polymer Blends on Prepatterned Substrates Macromolecules 2009, 43, 1124-1128
60. Sambrook, J.; Russell, D. W. Molecular Cloning: A Laboratory Manual, 3 rd ed.; Cold Spring Harbor Laboratory Press: Cold Spring Harbor, NY, 2001.
61. Rasband, W. S. ImageJ; U.S. National Institutes of Health, Bethesda, MD, 1997-2011; http://imagej.nih.gov/ij/.
62. Liu, Y. C.; Chou, Y. C. Formaldehyde in Formaldehyde/Agarose Gel May Be Eliminated without Affecting the Electrophoretic Separation of RNA Molecules Biotechniques 1990, 9, 558-560