메뉴 건너뛰기




Volumn 134, Issue 22, 2011, Pages

Simulations of the confinement of ubiquitin in self-assembled reverse micelles

Author keywords

[No Author keywords available]

Indexed keywords

BACKBONE DYNAMICS; BINDING DOMAIN; DIRECT CONTACT; DIRECT INTERACTIONS; HIGH CONCENTRATION; HYDROPHOBIC PATCH; HYDROPHOBIC TAILS; IN-VIVO; INTERNAL DYNAMICS; ISO-OCTANE; LOW SALT CONCENTRATION; MOLECULAR DYNAMICS SIMULATIONS; PROTEIN DYNAMICS; RELAXATION DYNAMICS; REVERSE MICELLES; SELF-ASSEMBLED; SURFACTANT HEAD GROUPS; UBIQUITIN;

EID: 79959394350     PISSN: 00219606     EISSN: None     Source Type: Journal    
DOI: 10.1063/1.3592712     Document Type: Article
Times cited : (57)

References (74)
  • 1
    • 0041822089 scopus 로고    scopus 로고
    • Join the crowd
    • DOI 10.1038/425027a
    • R. Ellis and A. Minton, Nature (London) 425, 27 (2003). 10.1038/425027a (Pubitemid 37101701)
    • (2003) Nature , vol.425 , Issue.6953 , pp. 27-28
    • Ellis, R.J.1    Minton, A.P.2
  • 3
    • 0035949430 scopus 로고    scopus 로고
    • Stabilization of proteins in confined spaces
    • DOI 10.1021/bi0155504
    • H. Zhou and K. Dill, Biochem. J. 40, 11289 (2001). 10.1021/bi0155504 (Pubitemid 32911271)
    • (2001) Biochemistry , vol.40 , Issue.38 , pp. 11289-11293
    • Zhou, H.-X.1    Dill, K.A.2
  • 6
    • 0036164351 scopus 로고    scopus 로고
    • Solute and macromolecule diffusion in cellular aqueous compartments
    • DOI 10.1016/S0968-0004(01)02003-5, PII S0968000401020035
    • A. Verkman, Trends Biol. Sci. 27, 27 (2002). 10.1016/S0968-0004(01)02003- 5 (Pubitemid 34131622)
    • (2002) Trends in Biochemical Sciences , vol.27 , Issue.1 , pp. 27-33
    • Verkman, A.S.1
  • 15
    • 0035092041 scopus 로고    scopus 로고
    • Molecular confinement influences protein structure and enhances thermal protein stability
    • DOI 10.1110/ps.36201
    • D. Eggers and J. Valentine, Protein. Sci. 10, 250 (2001). 10.1110/ps.36201 (Pubitemid 32229119)
    • (2001) Protein Science , vol.10 , Issue.2 , pp. 250-261
    • Eggers, D.K.1    Valentine, J.S.2
  • 17
    • 35948929053 scopus 로고    scopus 로고
    • Site-specific hydration status of an amphipathic peptide in AOT reverse micelles
    • DOI 10.1021/la701686g
    • S. Mukherjee, P. Chowdhury, W. F. DeGrado, and F. Gai, Langmuir 23, 11174 (2007). 10.1021/la701686g (Pubitemid 350069343)
    • (2007) Langmuir , vol.23 , Issue.22 , pp. 11174-11179
    • Mukherjee, S.1    Chowdhury, P.2    DeGrado, W.F.3    Gai, F.4
  • 18
    • 27644439602 scopus 로고    scopus 로고
    • Novel surfactant mixtures for NMR spectroscopy of encapsulated proteins dissolved in low-viscosity fluids
    • DOI 10.1110/ps.051535405
    • R. Peterson, M. Pometun, Z. Shi, and A. Wand, Protein Sci. 14, 2919 (2005). 10.1110/ps.051535405 (Pubitemid 41577273)
    • (2005) Protein Science , vol.14 , Issue.11 , pp. 2919-2921
    • Peterson, R.W.1    Pometun, M.S.2    Shi, Z.3    Wand, A.J.4
  • 19
    • 0034703133 scopus 로고    scopus 로고
    • 10.1126/science.289.5487.2061
    • C. Joazeiro and T. Hunter, Science 289, 2061 (2000). 10.1126/science.289. 5487.2061
    • (2000) Science , vol.289 , pp. 2061
    • Joazeiro, C.1    Hunter, T.2
  • 25
    • 0034824952 scopus 로고    scopus 로고
    • Validation of protein structure from preparations of encapsulated proteins dissolved in low viscosity fluids
    • DOI 10.1021/ja005766d
    • C. Babu, P. Flynn, and A. Wand, J. Am. Chem. Soc. 123, 2691 (2001). 10.1021/ja005766d (Pubitemid 32888581)
    • (2001) Journal of the American Chemical Society , vol.123 , Issue.11 , pp. 2691-2692
    • Babu, C.R.1    Flynn, P.F.2    Wand, A.J.3
  • 26
    • 68049137794 scopus 로고    scopus 로고
    • 10.1016/j.bpj.2009.03.014
    • J. Tian and A. E. Garcia, Biophys. J. 96, L57 (2009). 10.1016/j.bpj.2009.03.014
    • (2009) Biophys. J. , vol.96 , pp. 57
    • Tian, J.1    Garcia, A.E.2
  • 28
  • 29
    • 10944225431 scopus 로고    scopus 로고
    • Molecular modeling and simulations of AOT-water reverse micelles in isooctane: Structural and dynamic properties
    • DOI 10.1021/jp047138e
    • S. Abel, F. Sterpone, S. Bandyopadhyay, and M. Marchi, J. Phys. Chem. B 108, 19458 (2004). 10.1021/jp047138e (Pubitemid 40011197)
    • (2004) Journal of Physical Chemistry B , vol.108 , Issue.50 , pp. 19458-19466
    • Abel, S.1    Sterpone, F.2    Bandyopadhyay, S.3    Marchi, M.4
  • 40
    • 79959420230 scopus 로고    scopus 로고
    • See supplementary material at E-JCPSA6-134-044120 providing further details about protein fluctuations, diffusion of ubiquitin inside the RM and partial charges for the neutral AOT headgroups.
    • See supplementary material at http://dx.doi.org/10.1063/1.3592712 E-JCPSA6-134-044120 providing further details about protein fluctuations, diffusion of ubiquitin inside the RM and partial charges for the neutral AOT headgroups.
  • 41
    • 0037165750 scopus 로고    scopus 로고
    • General framework for studying the dynamics of folded and nonfolded proteins by NMR relaxation spectroscopy and MD simulation
    • DOI 10.1021/ja012750u
    • J. Prompers and R. Bruschweiler, J. Am. Chem. Soc. 124, 4522 (2002). 10.1021/ja012750u (Pubitemid 34441586)
    • (2002) Journal of the American Chemical Society , vol.124 , Issue.16 , pp. 4522-4534
    • Prompers, J.J.1    Bruschweiler, R.2
  • 44
    • 4243155782 scopus 로고    scopus 로고
    • 10.1021/cr030413t
    • A. Palmer, Chem. Rev. 104, 3623 (2004). 10.1021/cr030413t
    • (2004) Chem. Rev. , vol.104 , pp. 3623
    • Palmer, A.1
  • 45
    • 0034651984 scopus 로고    scopus 로고
    • 10.1002/(SICI)1097-0134(20000215)38:3261::AID-PROT33.0.CO;2-Q
    • A. E. Garcia and G. Hummer, Proteins: Struct., Funct., Genet. 38, 261 (2000). 10.1002/(SICI)1097-0134(20000215)38:3261::AID-PROT33.0.CO;2-Q
    • (2000) Proteins: Struct., Funct., Genet. , vol.38 , pp. 261
    • Garcia, A.E.1    Hummer, G.2
  • 47
    • 39749155117 scopus 로고    scopus 로고
    • Water penetration in the low and high pressure native states of ubiquitin
    • DOI 10.1002/prot.21562
    • R. Day and A. E. Garcia, Proteins: Struct., Funct., Genet. 70, 1175 (2008). 10.1002/prot.21562 (Pubitemid 351304078)
    • (2008) Proteins: Structure, Function and Genetics , vol.70 , Issue.4 , pp. 1175-1184
    • Day, R.1    Garcia, A.E.2
  • 50
    • 1842534583 scopus 로고    scopus 로고
    • MHC-peptide binding is assisted by bound water molecules
    • DOI 10.1016/j.jmb.2004.02.039, PII S0022283604001585
    • P. M. Petrone and A. E. Garcia, J. Mol. Bio. 338, 419 (2004). 10.1016/j.jmb.2004.02.039 (Pubitemid 38450741)
    • (2004) Journal of Molecular Biology , vol.338 , Issue.2 , pp. 419-435
    • Petrone, P.M.1    Garcia, A.E.2
  • 56
    • 23044435317 scopus 로고    scopus 로고
    • Statistical and molecular dynamics studies of buried waters in globular proteins
    • DOI 10.1002/prot.20511
    • S. Park and J. Saven, Proteins: Struct., Funct., Bioinf. 60, 450 (2005). 10.1002/prot.20511 (Pubitemid 41061638)
    • (2005) Proteins: Structure, Function and Genetics , vol.60 , Issue.3 , pp. 450-463
    • Park, S.1    Saven, J.G.2
  • 59
    • 0028948786 scopus 로고
    • 10.1006/jmbi.1994.0055
    • V. Denisov and B. Halle, J. Mol. Bio. 245, 682 (1995). 10.1006/jmbi.1994.0055
    • (1995) J. Mol. Bio. , vol.245 , pp. 682
    • Denisov, V.1    Halle, B.2
  • 60
    • 38949183943 scopus 로고    scopus 로고
    • Nanosecond to microsecond protein dynamics probed by magnetic relaxation dispersion of buried water molecules
    • DOI 10.1021/ja0775873
    • E. Persson and B. Halle, J. Am. Chem. Soc. 130, 1774 (2008). 10.1021/ja0775873 (Pubitemid 351214099)
    • (2008) Journal of the American Chemical Society , vol.130 , Issue.5 , pp. 1774-1787
    • Persson, E.1    Halle, B.2
  • 61
    • 8144224408 scopus 로고    scopus 로고
    • Higher order structure of proteins solubilized in AOT reverse micelles
    • DOI 10.1016/j.colsurfb.2004.02.020, PII S0927776504002139
    • K. Naoe, K. Noda, M. Kawagoe, and M. Imai, Colloids Surf., B 38, 179 (2004); 10.1016/j.colsurfb.2004.02.020 (Pubitemid 39473335)
    • (2004) Colloids and Surfaces B: Biointerfaces , vol.38 , Issue.SPEC. ISS. , pp. 179-185
    • Naoe, K.1    Noda, K.2    Kawagoe, M.3    Imai, M.4
  • 62
    • 79959407112 scopus 로고    scopus 로고
    • Symposium on Colloid and Soft Matters, Yokohama, JAPAN, OCT 11-13.
    • Symposium on Colloid and Soft Matters, Yokohama, JAPAN, OCT 11-13, 2003.
    • (2003)
  • 67
    • 1842473098 scopus 로고    scopus 로고
    • Direct access to the cooperative substructure of proteins and the protein ensemble via cold denaturation
    • DOI 10.1038/nsmb739
    • C. Babu, V. Hilser, and A. Wand, Nat. Struct. Mol. Bio. 11, 352 (2004). 10.1038/nsmb739 (Pubitemid 38436800)
    • (2004) Nature Structural and Molecular Biology , vol.11 , Issue.4 , pp. 352-357
    • Babu, C.R.1    Hilser, V.J.2    Wand, A.J.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.