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Volumn 121, Issue 7, 2004, Pages 2904-2914

Overcoming free energy barriers using unconstrained molecular dynamics simulations

Author keywords

[No Author keywords available]

Indexed keywords

COMPUTER SIMULATION; DEGREES OF FREEDOM (MECHANICS); DIFFUSION; DIMERIZATION; FREE ENERGY; HYDRATION; METHANE; PHASE INTERFACES; SAMPLING; WATER;

EID: 4344660645     PISSN: 00219606     EISSN: None     Source Type: Journal    
DOI: 10.1063/1.1773132     Document Type: Article
Times cited : (432)

References (59)
  • 6
    • 0001577491 scopus 로고    scopus 로고
    • edited by P. V. R. Schleyer, N. L. Allinger, T. Clark, J. Gasteiger, P. A. Kollman, H. F. Schaefer III, and P. R. Schreiner Wiley, Chichester
    • A. E. Mark, in Encyclopedia of Computational Chemistry, edited by P. V. R. Schleyer, N. L. Allinger, T. Clark, J. Gasteiger, P. A. Kollman, H. F. Schaefer III, and P. R. Schreiner (Wiley, Chichester, 1998), Vol. 2, pp. 1070-1083.
    • (1998) Encyclopedia of Computational Chemistry , vol.2 , pp. 1070-1083
    • Mark, A.E.1
  • 31
    • 0042415783 scopus 로고    scopus 로고
    • L. Kalé, R. Skeel, M. Bhandarkar et al., J. Comput. Phys. 151, 283 (1999). (Generation of free energy profiles using the formalism of unconstrained molecular dynamics with an adaptive biasing force is not a standard feature of NAMD2. Appropriate routines to compute free energy profiles in which the reaction coordinate is a distance between atoms, centers of mass, and along a given direction of Cartesian space were written and incorporated by the authors, and will be made available, in the upcoming NAMD distribution.)
    • (1999) J. Comput. Phys. , vol.151 , pp. 283
    • Kalé, L.1    Skeel, R.2    Bhandarkar, M.3
  • 32
    • 4344626411 scopus 로고    scopus 로고
    • Theoretical biophysics group, University of Illinois and Beckman Institute, 405 North Mathews, Urbana, Illinois 61801
    • M. Bhandarkar, R. Brunner, C. Chipot et al., NAMD users guide, version 2.5, Theoretical biophysics group, University of Illinois and Beckman Institute, 405 North Mathews, Urbana, Illinois 61801, 2003.
    • (2003) NAMD Users Guide, Version 2.5
    • Bhandarkar, M.1    Brunner, R.2    Chipot, C.3
  • 45
    • 7044239742 scopus 로고
    • Washington, D.C
    • P. A. Kollman, Chem. Rev. (Washington, D.C.) 93, 2395 (1993).
    • (1993) Chem. Rev. , vol.93 , pp. 2395
    • Kollman, P.A.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.