메뉴 건너뛰기




Volumn 108, Issue 22, 2011, Pages

Genome-wide remodeling of the epigenetic landscape during myogenic differentiation

Author keywords

Chip Seq; Chromatin modifications; Muscle development; Transcriptional regulation

Indexed keywords

HISTONE; METHYLTRANSFERASE; MYOGENIN; TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR EZH2; TRANSCRIPTION FACTOR RUNX2; TRANSCRIPTION FACTOR SOX5; TRANSCRIPTION FACTOR SOX6; TRANSCRIPTION FACTOR SOX9;

EID: 79959349283     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1102223108     Document Type: Article
Times cited : (236)

References (33)
  • 1
    • 34249299791 scopus 로고    scopus 로고
    • The complex language of chromatin regulation during transcription
    • Berger SL (2007) The complex language of chromatin regulation during transcription. Nature 447:407-412.
    • (2007) Nature , vol.447 , pp. 407-412
    • Berger, S.L.1
  • 2
    • 33847070442 scopus 로고    scopus 로고
    • The Role of Chromatin during Transcription
    • DOI 10.1016/j.cell.2007.01.015, PII S0092867407001092
    • Li B, Carey M, Workman JL (2007) The role of chromatin during transcription. Cell 128:707-719. (Pubitemid 46273570)
    • (2007) Cell , vol.128 , Issue.4 , pp. 707-719
    • Li, B.1    Carey, M.2    Workman, J.L.3
  • 3
    • 33646070846 scopus 로고    scopus 로고
    • A bivalent chromatin structure marks key developmental genes in embryonic stem cells
    • Bernstein BE, et al. (2006) A bivalent chromatin structure marks key developmental genes in embryonic stem cells. Cell 125:315-326.
    • (2006) Cell , vol.125 , pp. 315-326
    • Bernstein, B.E.1
  • 6
    • 77951935861 scopus 로고    scopus 로고
    • Genome-wide MyoD binding in skeletal muscle cells: A potential for broad cellular reprogramming
    • Cao Y, et al. (2010) Genome-wide MyoD binding in skeletal muscle cells: A potential for broad cellular reprogramming. Dev Cell 18:662-674.
    • (2010) Dev Cell , vol.18 , pp. 662-674
    • Cao, Y.1
  • 7
    • 7544230144 scopus 로고    scopus 로고
    • The Polycomb Ezh2 methyltransferase regulates muscle gene expression and skeletal muscle differentiation
    • DOI 10.1101/gad.1241904
    • Caretti G, Di Padova M, Micales B, Lyons GE, Sartorelli V (2004) The Polycomb Ezh2 methyltransferase regulates muscle gene expression and skeletal muscle differentiation. Genes Dev 18:2627-2638. (Pubitemid 39453102)
    • (2004) Genes and Development , vol.18 , Issue.21 , pp. 2627-2638
    • Caretti, G.1    Di, P.M.2    Micales, B.3    Lyons, G.E.4    Sartorelli, V.5
  • 8
    • 38049081151 scopus 로고    scopus 로고
    • Retinoblastoma tumor suppressor protein-dependent methylation of histone H3 lysine 27 is associated with irreversible cell cycle exit
    • Blais A, van Oevelen CJ, Margueron R, Acosta-Alvear D, Dynlacht BD (2007) Retinoblastoma tumor suppressor protein-dependent methylation of histone H3 lysine 27 is associated with irreversible cell cycle exit. J Cell Biol 179:1399-1412.
    • (2007) J Cell Biol , vol.179 , pp. 1399-1412
    • Blais, A.1    Van Oevelen, C.J.2    Margueron, R.3    Acosta-Alvear, D.4    Dynlacht, B.D.5
  • 9
    • 77951428293 scopus 로고    scopus 로고
    • UTX mediates demethylation of H3K27me3 at musclespecific genes during myogenesis
    • Seenundun S, et al. (2010) UTX mediates demethylation of H3K27me3 at musclespecific genes during myogenesis. EMBO J 29:1401-1411.
    • (2010) EMBO J , vol.29 , pp. 1401-1411
    • Seenundun, S.1
  • 10
    • 77956247987 scopus 로고    scopus 로고
    • Transient inactivation of Rb and ARF yields regenerative cells from postmitotic mammalian muscle
    • Pajcini KV, Corbel SY, Sage J, Pomerantz JH, Blau HM (2010) Transient inactivation of Rb and ARF yields regenerative cells from postmitotic mammalian muscle. Cell Stem Cell 7:198-213.
    • (2010) Cell Stem Cell , vol.7 , pp. 198-213
    • Pajcini, K.V.1    Corbel, S.Y.2    Sage, J.3    Pomerantz, J.H.4    Blau, H.M.5
  • 11
    • 53549094681 scopus 로고    scopus 로고
    • Cathepsin L proteolytically processes histone H3 during mouse embryonic stem cell differentiation
    • Duncan EM, et al. (2008) Cathepsin L proteolytically processes histone H3 during mouse embryonic stem cell differentiation. Cell 135:284-294.
    • (2008) Cell , vol.135 , pp. 284-294
    • Duncan, E.M.1
  • 12
    • 78449246287 scopus 로고    scopus 로고
    • Cooperation between myogenic regulatory factors and SIX family transcription factors is important for myoblast differentiation
    • Liu Y, Chu A, Chakroun I, Islam U, Blais A (2010) Cooperation between myogenic regulatory factors and SIX family transcription factors is important for myoblast differentiation. Nucleic Acids Res 38:6857-6871.
    • (2010) Nucleic Acids Res , vol.38 , pp. 6857-6871
    • Liu, Y.1    Chu, A.2    Chakroun, I.3    Islam, U.4    Blais, A.5
  • 13
    • 79959345514 scopus 로고    scopus 로고
    • The mammalian Sin3 proteins are required for muscle development and sarcomere specification
    • van Oevelen C, et al. (2010) The mammalian Sin3 proteins are required for muscle development and sarcomere specification. Mol Cell Biol 30:5686-5697.
    • (2010) Mol Cell Biol , vol.30 , pp. 5686-5697
    • Van Oevelen, C.1
  • 15
    • 34248169728 scopus 로고    scopus 로고
    • The polycomb group protein Suz12 is required for embryonic stem cell differentiation
    • DOI 10.1128/MCB.01432-06
    • Pasini D, Bracken AP, Hansen JB, Capillo M, Helin K (2007) The polycomb group protein Suz12 is required for embryonic stem cell differentiation. Mol Cell Biol 27:3769-3779. (Pubitemid 46726184)
    • (2007) Molecular and Cellular Biology , vol.27 , Issue.10 , pp. 3769-3779
    • Pasini, D.1    Bracken, A.P.2    Hansen, J.B.3    Capillo, M.4    Helin, K.5
  • 17
    • 59949085939 scopus 로고    scopus 로고
    • H3K27me3 forms BLOCs over silent genes and intergenic regions and specifies a histone banding pattern on a mouse autosomal chromosome
    • Pauler FM, et al. (2009) H3K27me3 forms BLOCs over silent genes and intergenic regions and specifies a histone banding pattern on a mouse autosomal chromosome. Genome Res 19:221-233.
    • (2009) Genome Res , vol.19 , pp. 221-233
    • Pauler, F.M.1
  • 18
    • 0028871780 scopus 로고
    • Transdifferentiation of myoblasts by the adipogenic transcription factors PPAR gamma and C/EBP alpha
    • Hu E, Tontonoz P, Spiegelman BM (1995) Transdifferentiation of myoblasts by the adipogenic transcription factors PPAR gamma and C/EBP alpha. Proc Natl Acad Sci USA 92:9856-9860.
    • (1995) Proc Natl Acad Sci USA , vol.92 , pp. 9856-9860
    • Hu, E.1    Tontonoz, P.2    Spiegelman, B.M.3
  • 19
    • 0034460993 scopus 로고    scopus 로고
    • Runx2 is a common target of transforming growth factor beta1 and bone morphogenetic protein 2, and cooperation between Runx2 and Smad5 induces osteoblast-specific gene expression in the pluripotent mesenchymal precursor cell line C2C12
    • Lee KS, et al. (2000) Runx2 is a common target of transforming growth factor beta1 and bone morphogenetic protein 2, and cooperation between Runx2 and Smad5 induces osteoblast-specific gene expression in the pluripotent mesenchymal precursor cell line C2C12. Mol Cell Biol 20:8783-8792.
    • (2000) Mol Cell Biol , vol.20 , pp. 8783-8792
    • Lee, K.S.1
  • 20
    • 65549104157 scopus 로고    scopus 로고
    • Histone modifications at human enhancers reflect global cell-type-specific gene expression
    • Heintzman ND, et al. (2009) Histone modifications at human enhancers reflect global cell-type-specific gene expression. Nature 459:108-112.
    • (2009) Nature , vol.459 , pp. 108-112
    • Heintzman, N.D.1
  • 21
    • 60149091656 scopus 로고    scopus 로고
    • ChIP-seq accurately predicts tissue-specific activity of enhancers
    • Visel A, et al. (2009) ChIP-seq accurately predicts tissue-specific activity of enhancers. Nature 457:854-858.
    • (2009) Nature , vol.457 , pp. 854-858
    • Visel, A.1
  • 22
    • 77952367798 scopus 로고    scopus 로고
    • Widespread transcription at neuronal activity-regulated enhancers
    • Kim TK, et al. (2010) Widespread transcription at neuronal activity-regulated enhancers. Nature 465:182-187.
    • (2010) Nature , vol.465 , pp. 182-187
    • Kim, T.K.1
  • 23
    • 2542584654 scopus 로고    scopus 로고
    • Detection of functional DNA motifs via statistical over-representation
    • DOI 10.1093/nar/gkh299
    • Frith MC, et al. (2004) Detection of functional DNA motifs via statistical overrepresentation. Nucleic Acids Res 32:1372-1381. (Pubitemid 38854738)
    • (2004) Nucleic Acids Research , vol.32 , Issue.4 , pp. 1372-1381
    • Frith, M.C.1    Fu, Y.2    Yu, L.3    Chen, J.-F.4    Hansen, U.5    Weng, Z.6
  • 24
    • 0033513540 scopus 로고    scopus 로고
    • Independent repressor domains in ZEB regulate muscle and T-cell differentiation
    • Postigo AA, Dean DC (1999) Independent repressor domains in ZEB regulate muscle and T-cell differentiation. Mol Cell Biol 19:7961-7971. (Pubitemid 30413991)
    • (1999) Molecular and Cellular Biology , vol.19 , Issue.12 , pp. 7961-7971
    • Postigo, A.A.1    Dean, D.C.2
  • 26
    • 70349469565 scopus 로고    scopus 로고
    • Mechanisms of polycomb gene silencing: Knowns and unknowns
    • Simon JA, Kingston RE (2009) Mechanisms of polycomb gene silencing: knowns and unknowns. Nat Rev Mol Cell Biol 10:697-708.
    • (2009) Nat Rev Mol Cell Biol , vol.10 , pp. 697-708
    • Simon, J.A.1    Kingston, R.E.2
  • 27
    • 77951947926 scopus 로고    scopus 로고
    • Ring1B compacts chromatin structure and represses gene expression independent of histone ubiquitination
    • Eskeland R, et al. (2010) Ring1B compacts chromatin structure and represses gene expression independent of histone ubiquitination. Mol Cell 38:452-464.
    • (2010) Mol Cell , vol.38 , pp. 452-464
    • Eskeland, R.1
  • 28
    • 0026708853 scopus 로고
    • Roles for the integrin VLA-4 and its counter receptor VCAM-1 in myogenesis
    • Rosen GD, et al. (1992) Roles for the integrin VLA-4 and its counter receptor VCAM-1 in myogenesis. Cell 69:1107-1119.
    • (1992) Cell , vol.69 , pp. 1107-1119
    • Rosen, G.D.1
  • 29
    • 55449105221 scopus 로고    scopus 로고
    • Genomewide analysis of PRC1 and PRC2 occupancy identifies two classes of bivalent domains
    • Ku M, et al. (2008) Genomewide analysis of PRC1 and PRC2 occupancy identifies two classes of bivalent domains. PLoS Genet 4:e1000242.
    • (2008) PLoS Genet , vol.4
    • Ku, M.1
  • 30
    • 77956282774 scopus 로고    scopus 로고
    • Opposing roles of polycomb repressive complexes in hematopoietic stem and progenitor cells
    • Majewski IJ, et al. (2010) Opposing roles of polycomb repressive complexes in hematopoietic stem and progenitor cells. Blood 116:731-739.
    • (2010) Blood , vol.116 , pp. 731-739
    • Majewski, I.J.1
  • 31
    • 34447508437 scopus 로고    scopus 로고
    • Ring1B is crucial for the regulation of developmental control genes and PRC1 proteins but not X inactivation in embryonic cells
    • DOI 10.1083/jcb.200612127
    • Leeb M, Wutz A (2007) Ring1B is crucial for the regulation of developmental control genes and PRC1 proteins but not X inactivation in embryonic cells. J Cell Biol 178:219-229. (Pubitemid 47076459)
    • (2007) Journal of Cell Biology , vol.178 , Issue.2 , pp. 219-229
    • Leeb, M.1    Wutz, A.2
  • 32
    • 0024294014 scopus 로고
    • MyoD1: A nuclear phosphoprotein requiring a Myc homology region to convert fibroblasts to myoblasts
    • Tapscott SJ, et al. (1988) MyoD1: A nuclear phosphoprotein requiring a Myc homology region to convert fibroblasts to myoblasts. Science 242:405-411.
    • (1988) Science , vol.242 , pp. 405-411
    • Tapscott, S.J.1
  • 33
    • 0027227469 scopus 로고
    • The regulation of myogenin gene expression during the embryonic development of the mouse
    • Yee SP, Rigby PW (1993) The regulation of myogenin gene expression during the embryonic development of the mouse. Genes Dev 7:1277-1289.
    • (1993) Genes Dev , vol.7 , pp. 1277-1289
    • Yee, S.P.1    Rigby, P.W.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.