Bacillus xiaoxiensis sp. nov., a slightly halophilic bacterium isolated from non-saline forest soil

International Journal of Systematic and Evolutionary Microbiology

Volumn 61, Issue 9, 2011, Pages 2095-2100

  Chen, Yi Guang ^a   Zhang, Yu Qin ^b   Chen, Qi Hui ^a   Klenk, Hans Peter ^c   He, Jian Wu ^a   Tang, Shu Kun ^d   Cui, Xiao Long ^d   Li, Wen Jun ^d,e  

^a JISHOU UNIVERSITY   (China)

^b INSTITUTE OF MEDICINAL BIOTECHNOLOGY   (China)

^c LEIBNIZ INSTITUTE DSMZ GERMAN COLLECTION OF MICROORGANISMS AND CELL CULTURES   (Germany)

^d YUNNAN UNIVERSITY   (China)

^e SOUTH CHINA SEA INSTITUTE OF OCEANOLOGY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

CARDIOLIPIN; DIAMINOPIMELIC ACID; FATTY ACID; GENOMIC DNA; PHOSPHATIDYLETHANOLAMINE; PHOSPHATIDYLGLYCEROL; QUINONE DERIVATIVE; RNA 16S;

ARTICLE; BACILLUS; BACILLUS LEHENSIS; BACILLUS OSHIMENSIS; BACILLUS PATAGONIENSIS; BACILLUS XIAOXIENSIS; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM ISOLATION; CELL WALL; CHEMOTAXONOMY; CHINA; DNA CONTENT; FOREST SOIL; GENE SEQUENCE; HALOPHILIC BACTERIUM; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PHYLOGENY; PRIORITY JOURNAL;

BACILLUS; BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; CELL WALL; CHINA; CLUSTER ANALYSIS; DIAMINOPIMELIC ACID; DNA, BACTERIAL; DNA, RIBOSOMAL; FATTY ACIDS; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; PEPTIDOGLYCAN; PHOSPHOLIPIDS; PHYLOGENY; QUINONES; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SODIUM CHLORIDE; SOIL MICROBIOLOGY; TREES;

BACILLUS (BACTERIUM); BACILLUS OSHIMENSIS; BACILLUS PATAGONIENSIS; BACTERIA (MICROORGANISMS);

EID: 79958241943     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.026286-0     Document Type: Article

References (54)

1. Arahal, D. R. & Ventosa, A. (2002). Moderately halophilic and halotolerant species of Bacillus and related genera. In Applications and Systematics of Bacillus and Relatives, pp. 83-99. Edited by R. C. W. Berkeley, M. Heyndrickx, N. Logan & P. De Vos. Oxford: Blackwell.
2. Ash, C., Farrow, J. A. E., Wallbanks, S. & Collins, M. D. (1991). Phylogenetic heterogeneity of the genus Bacillus as revealed by comparative analysis of small-subunit-ribosomal RNA sequences. Lett Appl Microbiol 13, 202-206.
3. Atlas, R. M. (1993). Handbook of Microbiological Media. Edited by L. C. Parks. Boca Raton, FL: CRC Press.
4. Chen, Y.-G., Cui, X.-L., Pukall, R., Li, H.-M., Yang, Y.-L., Xu, L.-H., Wen, M.-L., Peng, Q. & Jiang, C.-L. (2007). Salinicoccus kunmingensis sp. nov., a moderately halophilic bacterium isolated from a salt mine in Yunnan, south-west China. Int J Syst Evol Microbiol 57, 2327-2332.
5. Chen, Y.-G., Zhang, Y.-Q., Xiao, H.-D., Liu, Z.-X., Yi, L.-B., Shi, J.-X., Zhi, X.-Y., Cui, X.-L. & Li, W.-J. (2009a). Pontibacillus halophilus sp. nov., a moderately halophilic bacterium isolated from a sea urchin. Int J Syst Evol Microbiol 59, 1635-1639.
6. Chen, Y.-G., Zhang, Y.-Q., Wang, Y.-X., Liu, Z.-X., Klenk, H.-P., Xiao, H.-D., Tang, S.-K., Cui, X.-L. & Li, W.-J. (2009b). Bacillus neizhouensis sp. nov., a halophilic marine bacterium isolated from a sea anemone. Int J Syst Evol Microbiol 59, 3035-3039.
7. Chen, Q., Liu, Z., Peng, Q., Huang, K., He, J., Zhang, L., Li, W. & Chen, Y. (2010). [Diversity of halophilic and halotolerant bacteria isolated from non-saline soil collected from Xiaoxi National Natural Reserve, Hunan Province]. Wei Sheng Wu Xue Bao 50, 1452-1459 (in Chinese).
8. Chun, J., Lee, J.-H., Jung, Y., Kim, M., Kim, S., Kim, B. K. & Lim, Y.-W. (2007). EzTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences. Int J Syst Evol Microbiol 57, 2259-2261.
9. Collins, M. D. & Jones, D. (1980). Lipids in the classification and identification of coryneform bacteria containing peptidoglycans based on 2,4-diaminobutyric acid. J Appl Bacteriol 48, 459-470.
10. Cowan, S. T. & Steel, K. J. (1965). Manual for the Identification of Medical Bacteria. London: Cambridge University Press.
11. Cui, X.-L., Mao, P.-H., Zeng, M., Li, W.-J., Zhang, L.-P., Xu, L.-H. & Jiang, C.-L. (2001). Streptimonospora salina gen. nov., sp. nov., a new member of the family Nocardiopsaceae. Int J Syst Evol Microbiol 51, 357-363.
12. De Ley, J., Cattoir, H. & Reynaerts, A. (1970). The quantitative measurement of DNA hybridization from renaturation rates. Eur J Biochem 12, 133-142.
13. Dittmer, J. C. & Lester, R. L. (1964). A simple, specific spray for the detection of phospholipids on thin-layer chromatograms. J Lipid Res 15, 126-127.
14. Echigo, A., Hino, M., Fukushima, T., Mizuki, T., Kamekura, M. & Usami, R. (2005). Endospores of halophilic bacteria of the family Bacillaceae isolated from non-saline Japanese soil may be transported by Kosa event (Asian dust storm). Saline Syst 1, 8.
15. Echigo, A., Fukushima, T., Mizuki, T., Kamekura, M. & Usami, R. (2007). Halalkalibacillus halophilus gen. nov., sp. nov., a novelmoderately halophilic and alkaliphilic bacterium isolated from a nonsaline soil sample in Japan. Int J Syst Evol Microbiol 57, 1081-1085.
16. Felsenstein, J. (1981). Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17, 368-376.
17. Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
18. Felsenstein, J. (2002). PHYLIP (phylogeny inference package), version 3.6a. Distributed by the author. Department of Genome Sciences, University of Washington, Seattle, USA.
19. Ghosh, A., Bhardwaj, M., Satyanarayana, T., Khurana, M., Mayilraj, S. & Jain, R. K. (2007). Bacillus lehensis sp. nov., an alkalitolerant bacterium isolated from soil. Int J Syst Evol Microbiol 57, 238-242.
20. Gregersen, T. (1978). Rapid method for distinction of Gram-negative from Gram-positive bacteria. Eur J Appl Microbiol Biotechnol 5, 123-127.
21. Groth, I., Schumann, P., Weiss, N., Martin, K. & Rainey, F. A. (1996). Agrococcus jenensis gen. nov., sp. nov., a new genus of actinomycetes with diaminobutyric acid in the cell wall. Int J Syst Bacteriol 46, 234-239.
22. Hasegawa, T., Takizawa, M. & Tanida, S. (1983). A rapid analysis for chemical grouping of aerobic actinomycetes. J Gen Appl Microbiol 29, 319-322.
23. Hopwood, D. A., Bibb, M. J., Chater, K. F., Kieser, T., Bruton, C. J., Kieser, H. M., Lydiate, D. J., Smith, C. P., Ward, J. M. & Schrempf, H. (editors) (1985). Genetic Manipulation of Streptomyces. A Laboratory Manual. Norwich: John Innes Foundation.
24. Horikoshi, K. (1999). Alkaliphiles: some applications of their products for biotechnology. Microbiol Mol Biol Rev 63, 735-750.
25. Huß, V. A. R., Festl, H. & Schleifer, K. H. (1983). Studies on the spectrophotometric determination of DNA hybridization from renaturation rates. Syst Appl Microbiol 4, 184-192.
26. Jahnke, K. D. (1992). BASIC computer program for evaluation of spectroscopic DNA renaturation data from Gilford System 2600 spectrophotometer on a PC/XT/AT type personal computer. J Microbiol Methods 15, 61-73.
27. Kämpfer, P. (1994). Limits and possibilities of total fatty acid analysis for classification and identification of Bacillus species. Syst Appl Microbiol 17, 86-98.
28. Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16, 111-120.
29. Kluge, A. G. & Farris, F. S. (1969). Quantitative phyletics and the evolution of anurans. Syst Zool 18, 1-32.
30. Krulwich, T. A., Hicks, D. B., Swartz, T. H. & Ito, M. (2007). Bioenergetic adaptations that support alkaliphily. In Physiology and Biochemistry of Extremophiles, pp. 311-329. Edited by C. Gerday & N. Glansdorff. Washington, DC: American Society for Microbiology.
31. Lim, J.-M., Jeon, C. O. & Kim, C.-J. (2006a). Bacillus taeanensis sp. nov., a halophilic Gram-positive bacterium from a solar saltern in Korea. Int J Syst Evol Microbiol 56, 2903-2908.
32. Lim, J.-M., Jeon, C. O., Lee, S.-M., Lee, J. C., Xu, L. H., Jiang, C. L. & Kim, C. J. (2006b). Bacillus salarius sp. nov., a halophilic, sporeforming bacterium isolated from a salt lake in China. Int J Syst Evol Microbiol 56, 373-377.
33. Margesin, R. & Schinner, F. (2001). Potential of halotolerant and halophilic microorganisms for biotechnology. Extremophiles 5, 73-83.
34. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G+C content of deoxyribonucleic acid by highperformance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
35. Minnikin, D. E., Collins, M. D. & Goodfellow, M. (1979). Fatty acid and polar lipid composition in the classification of Cellulomonas, Oerskovia and related taxa. J Appl Microbiol 47, 87-95.
36. Nielsen, P., Rainey, F. A., Outtrup, H., Priest, F. G. & Fritze, D. (1994). Comparative 16S rDNA sequence analysis of some alkaliphilic bacilli and the establishment of a sixth rRNA group within the genus Bacillus. FEMS Microbiol Lett 117, 61-66.
37. Nielsen, P., Fritze, D. & Priest, F. G. (1995). Phenetic diversity of alkaliphilic Bacillus strains: proposal for nine new species. Microbiology 141, 1745-1761.
38. Nogi, Y., Takami, H. & Horikoshi, K. (2005). Characterization of alkaliphilic Bacillus strains used in industry: proposal of five novel species. Int J Syst Evol Microbiol 55, 2309-2315.
39. Olivera, N., Siñeriz, F. & Breccia, J. D. (2005). Bacillus patagoniensis sp. nov., a novel alkalitolerant bacterium from the rhizosphere of Atriplex lampa in Patagonia, Argentina. Int J Syst Evol Microbiol 55, 443-447.
40. Romano, I., Lama, L., Nicolaus, B., Gambacorta, A. & Giordano, A. (2005). Bacillus saliphilus sp. nov., isolated from a mineral pool in Campania, Italy. Int J Syst Evol Microbiol 55, 159-163.
41. Ryu, E. K. & MacCoss, M. (1979). Modification of the Dittmer-Lester reagent for the detection of phospholipid derivatives on thin-layer chromatograms. J Lipid Res 20, 561-563.
42. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
43. Sasser, M. (1990). Identification of bacteria by gas chromatography of cellular fatty acids, MIDI Technical Note 101. Newark, DE: MIDI Inc.
44. Smibert, R. M. & Krieg, N. R. (1994). Phenotypic characterization. In Methods for General and Molecular Bacteriology, pp. 607-654. Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood N & N. R. Krieg. Washington, DC: American Society for Microbiology.
45. Stackebrandt, E. & Goebel, B. M. (1994). Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44, 846-849.
46. Tamura, K., Dudley, J., Nei, M. & Kumar, S. (2007). MEGA4: molecular evolutionary genetic analysis (MEGA) software version 4.0. Mol Biol Evol 24, 1596-1599.
47. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
48. Usami, R., Echigo, A., Fukushima, T., Mizuki, T., Yoshida, Y. & Kamekura, M. (2007). Alkalibacillus silvisoli sp. nov., an alkaliphilic moderate halophile isolated from non-saline forest soil in Japan. Int J Syst Evol Microbiol 57, 770-774.
49. Vaskovsky, V. E., Kostetsky, E. Y. & Vasendin, I. M. (1975). A universal reagent for phospholipid analysis. J Chromatogr A 114, 129-141.
50. Ventosa, A., Quesada, E., Rodriguez-Valera, F., Ruiz-Berraquero, F. & Ramos-Cormenzana, A. (1982). Numerical taxonomy of moderately halophilic Gram-negative rods. J Gen Microbiol 128, 1959-1968.
51. Ventosa, A., Nieto, J. J. & Oren, A. (1998). Biology of moderately halophilic aerobic bacteria. Microbiol Mol Biol Rev 62, 504-544.
52. Wayne, L. G., Brenner, D. J., Colwell, R. R., Grimont, P. A. D., Kandler, O., Krichevsky, M. I., Moore, L. H., Moore, W. E. C., Murray, R. G. E. & other authors (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.
53. Yumoto, I. (2007). Environmental and taxonomic biodiversities of Gram-positive alkaliphiles. In Physiology and Biochemistry of Extremophiles, pp. 295-310. Edited by C. Gerday & N. Glansdorff. Washington, DC: American Society for Microbiology.
54. Yumoto, I., Hirota, K., Goto, T., Nodasaka, Y. & Nakajima, K. (2005). Bacillus oshimensis sp. nov., a moderately halophilic, non-motile alkaliphile. Int J Syst Evol Microbiol 55, 907-911.