Alkalibacillus silvisoli sp. nov., an alkaliphilic moderate halophile isolated from non-saline forest soil in Japan

International Journal of Systematic and Evolutionary Microbiology

Volumn 57, Issue 4, 2007, Pages 770-774

  Usami, Ron ^a   Echigo, Akinobu ^a   Fukushima, Tadamasa ^a   Mizuki, Toru ^a   Yoshida, Yasuhiko ^a   Kamekura, Masahiro ^b  

^a TOYO UNIVERSITY   (Japan)

^b Halophiles Research Institute   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

AMPICILLIN; ANISOMYCIN; BACITRACIN; BACTERIAL DNA; BACTERIAL RNA; CHLORAMPHENICOL; CYTOSINE; DIAMINOPIMELIC ACID; FATTY ACID; GUANINE; KANAMYCIN; NOVOBIOCIN; PEPTIDOGLYCAN; QUINONE DERIVATIVE; RNA 16S; SODIUM CHLORIDE; STREPTOMYCIN; TETRACYCLINE;

ALKALIBACILLUS FILIFORMIS; ALKALIBACILLUS HALOALKALIPHILUS; ALKALIBACILLUS SALILACUS; ALKALIBACILLUS SILVISOLI; ALKALOPHILE; ANTIBIOTIC RESISTANCE; ANTIBIOTIC SENSITIVITY; ARTICLE; BACTERIAL CELL; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM ISOLATE; BACTERIUM ISOLATION; CELL MOTILITY; CELL SHAPE; CONTROLLED STUDY; DNA CONTENT; DNA DNA HYBRIDIZATION; FOREST SOIL; GRAM POSITIVE BACTERIUM; HALOPHILIC BACTERIUM; JAPAN; MOLECULAR PHYLOGENY; NEW SPECIES; NOMENCLATURE; NONHUMAN; NUCLEOTIDE SEQUENCE; PH; PHENOTYPE; PRIORITY JOURNAL; RNA SEQUENCE; SEQUENCE HOMOLOGY; TEMPERATURE DEPENDENCE;

BACILLACEAE; DNA, BACTERIAL; DNA, RIBOSOMAL; JAPAN; MOLECULAR SEQUENCE DATA; PHYLOGENY; RNA, RIBOSOMAL, 16S; SODIUM CHLORIDE; SOIL MICROBIOLOGY; TREES;

ALKALIBACILLUS; ALKALIBACILLUS FILIFORMIS; ALKALIBACILLUS HALOALKALIPHILUS; ALKALIBACILLUS SALILACUS; POSIBACTERIA;

EID: 34248168743     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.64713-0     Document Type: Article

References (33)

1. Dussault, H. P. (1955). An improved technique for staining red halophilic bacteria. J Bacteriol 70, 484-485.
2. Echigo, A., Hino, M., Fukushima, T., Mizuki, T., Kamekura, M. & Usami, R. (2005). Endospores of halophilic bacteria of the family Bacillaceae isolated from non-saline Japanese soil may be transported by Kosa event (Asian dust storm). Saline Systems 1, 8. doi:10.1186/1746-1448-1-8
3. Ezaki, T., Hashimoto, Y. & Yabuuchi, E. (1989). Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39, 224-229.
4. Felsenstein, J. (1985). Confidence limits on phylogenies: An approach using the bootstrap. Evolution 39, 783-791.
5. Fritze, D. (1996). Bacillus haloalkaliphilus sp. nov. Int J Syst Bacteriol 46, 98-101.
6. Gregersen, T. (1978). Rapid method for distinction of gram-negative from gram-positive bacteria. Eur J Appl Microbiol Biotechnol 5, 123-127.
7. Horikoshi, K. (1999). Alkaliphiles: Some applications of their products for biotechnology. Microbiol Mol Biol Rev 63, 735-750,
8. Horikoshi, K. & Grant, W. D. (1998). Extremophiles - Microbial life in Extreme Environments. New York: Wiley-Liss.
9. Jeon, C. O., Lim, J. M., Lee, J. M., Xu, L. H., Jiang, C. L. & Kim, C. J. (2005). Reclassification of Bacillus haloalkaliphilus Fritze 1996 as Alkalibacillus haloalkaliphilus gen. nov., comb. nov. and the description of Alkalibacillus salilacus sp. nov., a novel halophilic bacterium isolated from a salt lake in China. Int J Syst Evol Microbiol 55, 1891-1896.
10. Kodaka, H., Armfield, A. Y., Lombard, G. L. & Dowell, V. R., Jr (1982). Practical procedure for demonstrating bacterial flagella. J Clin Microbiol 16, 948-952.
11. Komagata, K. & Suzuki, K. (1987). Lipid and cell-wall analysis in bacterial systematics. Methods Microbiol 19, 161-207.
12. Kushner, D. J. & Kamekura, M. (1988). Physiology of halophilic eubacteria. In Halophilic Bacteria, vol. 1, pp. 109-140. Edited by F. Rodriguez-Valera. Boca Raton FL: CRC Press.
13. Lenore, S. C., Arnold, E. G. & Andrew, D. E. (1998). Standard Methods for the Examination of Water and Wastewater, 20th edn. Washington, DC: American Public Health Association/American Water Works Association/Water Environment Federation.
14. Lipman, D. J. & Pearson, W. R. (1985). Rapid and sensitive protein similarity searches. Science 227, 1435-1441.
15. Miyazaki, S., Sugawara, H., Gojobori, T. & Tateno, Y. (2003). DNA Data Bank of Japan (DDBJ) in XML. Nucleic Acids Res 31, 13-16.
16. Murray, P. R., Baron, E. J., Pfaller, M. A., Tenover, F. C. & Yolken, R. H. (1999). Manual of Clinical Microbiology, 7th edn. Washington, DC: American Society for Microbiology.
17. Oren, A. (2002). Halophilic Microorganisms and their Environments. Dordrecht: Kluwer.
18. Oren, A., Ventosa, A. & Grant, W. D. (1997). Proposed minimal standards for description of new taxa in the order Halobacteriales. Int J Syst Bacteriol 47, 233-238.
19. Pearson, W. R. & Lipman, D. J. (1988). Improved tools for biological sequence comparison. Proc Natl Acad Sci U S A 85, 2444-2448.
20. Rainey, F. A. & Oren, A. (editors) (2006). Methods in Microbiology, vol. 35, Extremophiles. New York: Academic Press.
21. Romano, I., Lama, L., Nicolaus, B., Gambacorta, A. & Giordano, A. (2005). Alkalibacillus filiformis sp. nov., isolated from a mineral pool in Campania, Italy. Int J Syst Evol Microbiol 55 2395-2399.
22. Saito, H. & Miura, K. (1963). Preparation of transforming deoxyribonucleic acid by phenol treatment. Biochim Biophys Acta 72, 619-629.
23. Saitou, N. & Nei, M. (1987). The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol Biol Evol 4 406-425.
24. Schleifer, K. H. (1985). Analysis of the chemical composition and primary structure of murein. Methods Microbiol 18, 123-156.
25. Schleifer, K. H. & Kandler, O. (1972). Peptidoglycan types of bacterial cell walls and their taxonomic implications. Bacteriol Rev 36, 407-477.
26. Schlesner, H., Lawson, P. A., Collins, M. D., Weiss, N., Wehmeyer, U., Völker, H. & Thomm, M. (2001). Filobacillus milensis gen. nov., sp. nov., a new halophilic spore-forming bacterium with Orn-D-Glutype peptidoglycan. Int J Syst Evol Microbiol 51, 425-431.
27. Smibert, R. M. & Krieg, N. R. (1981). General characterization. In Manual of Methods for General Microbiology, pp. 409-443. Edited by P. Gerhardt, R. G. E. Murray, R. N. Costilow, E. W. Nester, W. A. Wood, N. R. Krieg & G. B. Phillips. Washington, DC: American Society for Microbiology.
28. Smibert, R. M. & Krieg, N. R. (1994). Phenotypic characterization. In Methods for General and Molecular Bacteriology, pp. 607-654. Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology.
29. Tamaoka, J. (1986). Analysis of bacterial menaquinone mixtures by reverse-phase high-performance liquid chromatography. Methods Enzymol 123, 251-256.
30. Tamaoka, J. & Komagata, K. (1984). Determination of DNA base composition by reverse-phase high-performance liquid chromatography. FEMS Microbiol Lett 25, 125-340.
31. Thompson, J. D., Higgins, D. G. & Gibson, T. J. (1994). CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22, 4673-4680.
32. Yumoto, I., Hirota, K., Goto, T., Nodasaka, Y. & Nakajima, K. (2005a) Bacillus oshimensis sp. nov., a moderately halophilic, non-motile alkaliphile. Int J Syst Evol Microbiol 55, 907-911.
33. Yumoto, I., Hirota, K., Nodasaka, Y. & Nakajima, K. (2005b). Oceanobacillus oncorhynchi sp. nov., a halotolerant obligate alkaliphile isolated from the skin of a rainbow trout (Oncorhynchus mykiss), and emended description of the genus Oceanobacillus. Int J Syst Evol Microbiol 55, 1521-1524.