-
1
-
-
0034708339
-
Complete sequence of the mitochondrial genome of Tetrahymena pyriformis and comparison with Paramecium aurelia mitochondrial DNA
-
10.1006/jmbi.2000.3529, 10715207
-
Burger G, Zhu Y, Littlejohn TG, Greenwood SJ, Schnare MN, Lang BF, Gray MW. Complete sequence of the mitochondrial genome of Tetrahymena pyriformis and comparison with Paramecium aurelia mitochondrial DNA. J Mol Biol 2000, 297:365-380. 10.1006/jmbi.2000.3529, 10715207.
-
(2000)
J Mol Biol
, vol.297
, pp. 365-380
-
-
Burger, G.1
Zhu, Y.2
Littlejohn, T.G.3
Greenwood, S.J.4
Schnare, M.N.5
Lang, B.F.6
Gray, M.W.7
-
2
-
-
0037443875
-
Complete sequence of the mitochondrial genome of Tetrahymena thermophila and comparative methods for identifying highly divergent genes
-
10.1093/nar/gkg270, 152872, 12626709
-
Brunk CF, Lee LC, Tran AB, Li JL. Complete sequence of the mitochondrial genome of Tetrahymena thermophila and comparative methods for identifying highly divergent genes. Nucleic Acids Res 2003, 31:1673-1682. 10.1093/nar/gkg270, 152872, 12626709.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 1673-1682
-
-
Brunk, C.F.1
Lee, L.C.2
Tran, A.B.3
Li, J.L.4
-
3
-
-
39749191907
-
Complete mitochondrial genome sequence of three Tetrahymena species reveals mutation hot spots and accelerated nonsynonymous substitutions in ymf genes
-
10.1371/journal.pone.0000650, 1919467, 17653277
-
Moradian MM, Beglaryan D, Skozylas JM, Kerikorian V. Complete mitochondrial genome sequence of three Tetrahymena species reveals mutation hot spots and accelerated nonsynonymous substitutions in ymf genes. PLoS ONE 2007, 2:e650. 10.1371/journal.pone.0000650, 1919467, 17653277.
-
(2007)
PLoS ONE
, vol.2
-
-
Moradian, M.M.1
Beglaryan, D.2
Skozylas, J.M.3
Kerikorian, V.4
-
4
-
-
70749160527
-
The mitochondrial genomes of the ciliates Euplotes minuta and Euplotes crassus
-
10.1186/1471-2164-10-514, 2779199, 19895685
-
De Graaf RM, van Alen TA, Dutilh BE, Kuiper JWP, van Zoggel HJAA, Huynh MB, Görtz H-D, Huynen MA, Hackstein JHP. The mitochondrial genomes of the ciliates Euplotes minuta and Euplotes crassus. BMC Genomics 2009, 10:514. 10.1186/1471-2164-10-514, 2779199, 19895685.
-
(2009)
BMC Genomics
, vol.10
, pp. 514
-
-
De Graaf, R.M.1
van Alen, T.A.2
Dutilh, B.E.3
Kuiper, J.W.P.4
van Zoggel, H.J.A.A.5
Huynh, M.B.6
Görtz, H.-.D.7
Huynen, M.A.8
Hackstein, J.H.P.9
-
5
-
-
0025139273
-
Nucleotide sequence of the mitochondrial genome of Paramecium
-
10.1093/nar/18.1.173, 330218, 2308823
-
Pritchard AE, Seilhamer JJ, Mahalingam R, Sable CL, Venuti SE, Cummings DJ. Nucleotide sequence of the mitochondrial genome of Paramecium. Nucleic Acids Res 1990, 18:173-180. 10.1093/nar/18.1.173, 330218, 2308823.
-
(1990)
Nucleic Acids Res
, vol.18
, pp. 173-180
-
-
Pritchard, A.E.1
Seilhamer, J.J.2
Mahalingam, R.3
Sable, C.L.4
Venuti, S.E.5
Cummings, D.J.6
-
6
-
-
33750858684
-
Global trends of whole-genome duplications revealed by the ciliate Paramecium tetraurelia
-
10.1038/nature05230, 17086204
-
Aury JM, Jaillon O, Duret L, Noel B, Jubin C, Porcel BM, Ségurens B, Daubin V, Anthouard V, Aiach N, Arnaiz O, Billaut A, Beisson J, Blanc I, Bouhouche K, Câmara F, Duharcourt S, Guigo R, Gogendeau D, Katinka M, Keller AM, Kissmehl R, Klotz C, Koll F, Le Mouël A, Lepère G, Malinsky S, Nowacki M, Nowak JK, Plattner H, Poulain J, Ruiz F, Serrano V, Zagulski M, Dessen P, Bétermier M, Weissenbach J, Scarpelli C, Schächter V, Sperling L, Meyer E, Cohen J, Wincker P. Global trends of whole-genome duplications revealed by the ciliate Paramecium tetraurelia. Nature 2006, 444:171-178. 10.1038/nature05230, 17086204.
-
(2006)
Nature
, vol.444
, pp. 171-178
-
-
Aury, J.M.1
Jaillon, O.2
Duret, L.3
Noel, B.4
Jubin, C.5
Porcel, B.M.6
Ségurens, B.7
Daubin, V.8
Anthouard, V.9
Aiach, N.10
Arnaiz, O.11
Billaut, A.12
Beisson, J.13
Blanc, I.14
Bouhouche, K.15
Câmara, F.16
Duharcourt, S.17
Guigo, R.18
Gogendeau, D.19
Katinka, M.20
Keller, A.M.21
Kissmehl, R.22
Klotz, C.23
Koll, F.24
Le Mouël, A.25
Lepère, G.26
Malinsky, S.27
Nowacki, M.28
Nowak, J.K.29
Plattner, H.30
Poulain, J.31
Ruiz, F.32
Serrano, V.33
Zagulski, M.34
Dessen, P.35
Bétermier, M.36
Weissenbach, J.37
Scarpelli, C.38
Schächter, V.39
Sperling, L.40
Meyer, E.41
Cohen, J.42
Wincker, P.43
more..
-
7
-
-
33748598232
-
Macronuclear genome sequence of the ciliate Tetrahymena thermophila, a model eukaryote
-
10.1371/journal.pbio.0040286, 1557398, 16933976
-
Eisen JA, Coyne RS, Wu M, Wu D, Thiagarajan M, Wortman JR, Badger JH, Ren Q, Amedeo P, Jones KM, Tallon LJ, Delcher AL, Salzberg SL, Silva JC, Haas BJ, Majoros WH, Farzad M, Carlton JM, Smith RK, Garg J, Pearlman RE, Karrer KM, Sun L, Manning G, Elde NC, Turkewitz AP, Asai DJ, Wilkes DE, Wang Y, Cai H, Collins K, Stewart BA, Lee SR, Wilamowska K, Weinberg Z, Ruzzo WL, Wloga D, Gaertig J, Frankel J, Tsao CC, Gorovsky MA, Keeling PJ, Waller RF, Patron NJ, Cherry JM, Stover NA, Krieger CJ, del Toro C, Ryder HF, Williamson SC, Barbeau RA, Hamilton EP, Orias E. Macronuclear genome sequence of the ciliate Tetrahymena thermophila, a model eukaryote. PLoS Biol 2006, 4:e286. 10.1371/journal.pbio.0040286, 1557398, 16933976.
-
(2006)
PLoS Biol
, vol.4
-
-
Eisen, J.A.1
Coyne, R.S.2
Wu, M.3
Wu, D.4
Thiagarajan, M.5
Wortman, J.R.6
Badger, J.H.7
Ren, Q.8
Amedeo, P.9
Jones, K.M.10
Tallon, L.J.11
Delcher, A.L.12
Salzberg, S.L.13
Silva, J.C.14
Haas, B.J.15
Majoros, W.H.16
Farzad, M.17
Carlton, J.M.18
Smith, R.K.19
Garg, J.20
Pearlman, R.E.21
Karrer, K.M.22
Sun, L.23
Manning, G.24
Elde, N.C.25
Turkewitz, A.P.26
Asai, D.J.27
Wilkes, D.E.28
Wang, Y.29
Cai, H.30
Collins, K.31
Stewart, B.A.32
Lee, S.R.33
Wilamowska, K.34
Weinberg, Z.35
Ruzzo, W.L.36
Wloga, D.37
Gaertig, J.38
Frankel, J.39
Tsao, C.C.40
Gorovsky, M.A.41
Keeling, P.J.42
Waller, R.F.43
Patron, N.J.44
Cherry, J.M.45
Stover, N.A.46
Krieger, C.J.47
del Toro, C.48
Ryder, H.F.49
Williamson, S.C.50
Barbeau, R.A.51
Hamilton, E.P.52
Orias, E.53
more..
-
8
-
-
40949111987
-
Patterns of codon usage in two ciliates that reassign the genetic code: Tetrahymena thermophila and Paramecium tetraurelia
-
10.1016/j.protis.2007.11.003, 18207458
-
Salim HMW, Ring KL, Cavalcanti ARO. Patterns of codon usage in two ciliates that reassign the genetic code: Tetrahymena thermophila and Paramecium tetraurelia. Protist 2008, 159:283-298. 10.1016/j.protis.2007.11.003, 18207458.
-
(2008)
Protist
, vol.159
, pp. 283-298
-
-
Salim, H.M.W.1
Ring, K.L.2
Cavalcanti, A.R.O.3
-
9
-
-
0027965733
-
Evolution of mitochondrial DNA in Paramecium caudatum
-
Tsukii Y. Evolution of mitochondrial DNA in Paramecium caudatum. Jpn J Genet 1994, 69:307-319.
-
(1994)
Jpn J Genet
, vol.69
, pp. 307-319
-
-
Tsukii, Y.1
-
10
-
-
0343953611
-
Phylogenetic relationships of the subclass Peniculia (Oligohymenophorea, Ciliphora) inferred from small subunit rRNA gene sequences
-
10.1111/j.1550-7408.2000.tb00069.x, 11140457
-
Strüder-Kypke CM, Wright GA, Fokin SI, Lynn DH. Phylogenetic relationships of the subclass Peniculia (Oligohymenophorea, Ciliphora) inferred from small subunit rRNA gene sequences. J Eukaryot Microbiol 2000, 47:419-429. 10.1111/j.1550-7408.2000.tb00069.x, 11140457.
-
(2000)
J Eukaryot Microbiol
, vol.47
, pp. 419-429
-
-
Strüder-Kypke, C.M.1
Wright, G.A.2
Fokin, S.I.3
Lynn, D.H.4
-
11
-
-
4143053727
-
Morphological and molecular investigations of Paramecium schewiakoffi sp. nov. (Ciliophora, Oligohymenophorea) and current status of distribution and taxonomy of Paramecium spp
-
Fokin SI, Przybos E, Chivilev SM, Beier CL, Horn M, Skotarczak B, Wodecka B, Fujishima M. Morphological and molecular investigations of Paramecium schewiakoffi sp. nov. (Ciliophora, Oligohymenophorea) and current status of distribution and taxonomy of Paramecium spp. Eur J Protistol 2004, 40:225-243.
-
(2004)
Eur J Protistol
, vol.40
, pp. 225-243
-
-
Fokin, S.I.1
Przybos, E.2
Chivilev, S.M.3
Beier, C.L.4
Horn, M.5
Skotarczak, B.6
Wodecka, B.7
Fujishima, M.8
-
12
-
-
43149105019
-
DNA barcodes provide a quick preview of mitochondrial genome composition
-
Min XJ, Hickey DA. DNA barcodes provide a quick preview of mitochondrial genome composition. PLoS ONE 2007, 3:e325.
-
(2007)
PLoS ONE
, vol.3
-
-
Min, X.J.1
Hickey, D.A.2
-
13
-
-
43149113681
-
Diagnosing mitochondrial DNA diversity: applications of a sentinel gene approach
-
10.1007/s00239-008-9088-2, 18368433
-
Clare EL, Kerr KCR, von Königslöw TE, Wilson JJ, Hebert PDN. Diagnosing mitochondrial DNA diversity: applications of a sentinel gene approach. J Mol Evol 2008, 66:362-367. 10.1007/s00239-008-9088-2, 18368433.
-
(2008)
J Mol Evol
, vol.66
, pp. 362-367
-
-
Clare, E.L.1
Kerr, K.C.R.2
von Königslöw, T.E.3
Wilson, J.J.4
Hebert, P.D.N.5
-
14
-
-
55049135211
-
Cytochrome b data suggest rapid speciation within the Paramecium aurelia species complex
-
10.1016/j.ympev.2008.08.007, 18778782
-
Barth D, Przybos E, Fokin SI, Schlegel M, Berendonk TU. Cytochrome b data suggest rapid speciation within the Paramecium aurelia species complex. Mol Phylogenet Evol 2008, 49:669-673. 10.1016/j.ympev.2008.08.007, 18778782.
-
(2008)
Mol Phylogenet Evol
, vol.49
, pp. 669-673
-
-
Barth, D.1
Przybos, E.2
Fokin, S.I.3
Schlegel, M.4
Berendonk, T.U.5
-
15
-
-
58449122276
-
Genetic diversity in the Paramecium aurelia species complex
-
10.1093/molbev/msn266, 19023087
-
Catania F, Wurmser F, Potekhin AA, Przybos E, Lynch M. Genetic diversity in the Paramecium aurelia species complex. Mol Biol Evol 2009, 26:421-431. 10.1093/molbev/msn266, 19023087.
-
(2009)
Mol Biol Evol
, vol.26
, pp. 421-431
-
-
Catania, F.1
Wurmser, F.2
Potekhin, A.A.3
Przybos, E.4
Lynch, M.5
-
16
-
-
34247871378
-
Mitochondrial genome sequence evolution in Chlamydomonas
-
10.1534/genetics.106.063156, 1800605, 17151253
-
Popescu CE, Lee RW. Mitochondrial genome sequence evolution in Chlamydomonas. Genetics 2007, 175:819-826. 10.1534/genetics.106.063156, 1800605, 17151253.
-
(2007)
Genetics
, vol.175
, pp. 819-826
-
-
Popescu, C.E.1
Lee, R.W.2
-
17
-
-
0029587471
-
The human genome: organization and evolutionary history
-
10.1146/annurev.ge.29.120195.002305, 8825483
-
Bernardi G. The human genome: organization and evolutionary history. Annu Rev Genet 1995, 29:445-476. 10.1146/annurev.ge.29.120195.002305, 8825483.
-
(1995)
Annu Rev Genet
, vol.29
, pp. 445-476
-
-
Bernardi, G.1
-
18
-
-
0030900384
-
Relationships between genomic G+C content, RNA secondary structures, and optimal group temperature in prokaryotes
-
10.1007/PL00006186, 9169555
-
Galtier N, Lobry JR. Relationships between genomic G+C content, RNA secondary structures, and optimal group temperature in prokaryotes. J Mol Evol 1997, 44:632-636. 10.1007/PL00006186, 9169555.
-
(1997)
J Mol Evol
, vol.44
, pp. 632-636
-
-
Galtier, N.1
Lobry, J.R.2
-
19
-
-
0001700497
-
Data on the occurrence of species of the Paramecium aurelia complex world-wide
-
Przybos E, Fokin SI. Data on the occurrence of species of the Paramecium aurelia complex world-wide. Protistology 2000, 1:179-184.
-
(2000)
Protistology
, vol.1
, pp. 179-184
-
-
Przybos, E.1
Fokin, S.I.2
-
20
-
-
38349147284
-
The Paramecium aurelia species complex, frequency and co-occurrence across Europe
-
10.3409/fb56_1-2.77-81, 19055029
-
Przybos E, Barth D, Berendonk TU. The Paramecium aurelia species complex, frequency and co-occurrence across Europe. Folia Biol Krakow 2008, 56:77-81. 10.3409/fb56_1-2.77-81, 19055029.
-
(2008)
Folia Biol Krakow
, vol.56
, pp. 77-81
-
-
Przybos, E.1
Barth, D.2
Berendonk, T.U.3
-
21
-
-
21244478374
-
Species of the Paramecium aurelia complex in Russia, Lower Wolga Basin
-
Przybos E, Rautian M, Potekhin A. Species of the Paramecium aurelia complex in Russia, Lower Wolga Basin. Protistology 2005, 4:129-134.
-
(2005)
Protistology
, vol.4
, pp. 129-134
-
-
Przybos, E.1
Rautian, M.2
Potekhin, A.3
-
22
-
-
0038543069
-
Biased gene conversion: implications for genome and sex evolution
-
Marais G. Biased gene conversion: implications for genome and sex evolution. Trends Ecol Evol 2003, 19:330-338.
-
(2003)
Trends Ecol Evol
, vol.19
, pp. 330-338
-
-
Marais, G.1
-
23
-
-
34548436653
-
Rapid concerted evolution in animal mitochondrial DNA
-
Tatarenkov A, Avise JC. Rapid concerted evolution in animal mitochondrial DNA. Proc R Soc B 2007, 274:822-826.
-
(2007)
Proc R Soc B
, vol.274
, pp. 822-826
-
-
Tatarenkov, A.1
Avise, J.C.2
-
24
-
-
39749186643
-
Mitochondrial genome of the colorless green alga Polytomella capuana: a linear molecule with an unprecedented GC content
-
Smith DR, Lee RW. Mitochondrial genome of the colorless green alga Polytomella capuana: a linear molecule with an unprecedented GC content. Mol Biol Evol 2007, 25:487-496.
-
(2007)
Mol Biol Evol
, vol.25
, pp. 487-496
-
-
Smith, D.R.1
Lee, R.W.2
-
25
-
-
50649085041
-
Relaxation of yeast mitochondrial functions after whole-genome duplication
-
10.1101/gr.074674.107, 2527710, 18669479
-
Jiang H, Guan W, Pinney D, Wang W, Gu Z. Relaxation of yeast mitochondrial functions after whole-genome duplication. Genome Res 2008, 18:1466-1471. 10.1101/gr.074674.107, 2527710, 18669479.
-
(2008)
Genome Res
, vol.18
, pp. 1466-1471
-
-
Jiang, H.1
Guan, W.2
Pinney, D.3
Wang, W.4
Gu, Z.5
-
26
-
-
18344398178
-
Genome structure and gene content in protist mitochondrial DNAs
-
10.1093/nar/26.4.865, 147373, 9461442
-
Gray MW, Lang BF, Cedergren R, Golding GB, Lemieux C, Sankoff D, Turmel M, Brossard N, Delage E, Littlejohn TG, Plante I, Rioux P, Saint-Louis D, Zhu Y, Burger G. Genome structure and gene content in protist mitochondrial DNAs. Nucleic Acids Res 1998, 26:865-878. 10.1093/nar/26.4.865, 147373, 9461442.
-
(1998)
Nucleic Acids Res
, vol.26
, pp. 865-878
-
-
Gray, M.W.1
Lang, B.F.2
Cedergren, R.3
Golding, G.B.4
Lemieux, C.5
Sankoff, D.6
Turmel, M.7
Brossard, N.8
Delage, E.9
Littlejohn, T.G.10
Plante, I.11
Rioux, P.12
Saint-Louis, D.13
Zhu, Y.14
Burger, G.15
-
27
-
-
0033639150
-
Statistical methods for detecting molecular adaptation
-
10.1016/S0169-5347(00)01994-7, 11114436
-
Yang Z, Bielawski JP. Statistical methods for detecting molecular adaptation. Trends Ecol Evol 2000, 15:496-503. 10.1016/S0169-5347(00)01994-7, 11114436.
-
(2000)
Trends Ecol Evol
, vol.15
, pp. 496-503
-
-
Yang, Z.1
Bielawski, J.P.2
-
28
-
-
34248669040
-
KaKs_Calculator: Calculating Ka and Ks though model selection and model averaging
-
Zhang Z, Li J, Zhao X-Q, Wang J, Wong G K-S, Yu J. KaKs_Calculator: Calculating Ka and Ks though model selection and model averaging. Geno Prot Bioinf 2006, 4:259-263.
-
(2006)
Geno Prot Bioinf
, vol.4
, pp. 259-263
-
-
Zhang, Z.1
Li, J.2
Zhao, X.-.Q.3
Wang, J.4
Wong G, K.-.S.5
Yu, J.6
-
29
-
-
0032211421
-
Mitochondrial DNA variable number tandem repeats (VNTRs): utility and problems in molecular ecology
-
10.1046/j.1365-294x.1998.00495.x, 9819900
-
Lunt DH, Whipple LE, Hyman BC. Mitochondrial DNA variable number tandem repeats (VNTRs): utility and problems in molecular ecology. Mol Ecol 1998, 7:1441-1455. 10.1046/j.1365-294x.1998.00495.x, 9819900.
-
(1998)
Mol Ecol
, vol.7
, pp. 1441-1455
-
-
Lunt, D.H.1
Whipple, L.E.2
Hyman, B.C.3
-
30
-
-
34247223751
-
Mitochondrial genome sequences and comparative genomics of Phytophthora ramorum and P. sojae
-
10.1007/s00294-007-0121-6, 17310332
-
Martin FN, Bensasson D, Tyler BM, Boore JL. Mitochondrial genome sequences and comparative genomics of Phytophthora ramorum and P. sojae. Curr Genet 2007, 51:285-296. 10.1007/s00294-007-0121-6, 17310332.
-
(2007)
Curr Genet
, vol.51
, pp. 285-296
-
-
Martin, F.N.1
Bensasson, D.2
Tyler, B.M.3
Boore, J.L.4
-
31
-
-
0029983147
-
Trinucleotide repeats and long homopeptides in genes and proteins associated with nervous system disease and development
-
10.1073/pnas.93.4.1560, 39980, 8643671
-
Karlin S, Burge C. Trinucleotide repeats and long homopeptides in genes and proteins associated with nervous system disease and development. Proc Natl Acad Sci USA 1996, 93:1560-1565. 10.1073/pnas.93.4.1560, 39980, 8643671.
-
(1996)
Proc Natl Acad Sci USA
, vol.93
, pp. 1560-1565
-
-
Karlin, S.1
Burge, C.2
-
32
-
-
2942706116
-
Diversity in coding tandem repeats in related Neisseria spp
-
10.1186/1471-2180-3-23, 305346, 14611665
-
Jordan P, Snyder LAS, Saunders NJ. Diversity in coding tandem repeats in related Neisseria spp. BMC Microbiol 2003, 3:23. 10.1186/1471-2180-3-23, 305346, 14611665.
-
(2003)
BMC Microbiol
, vol.3
, pp. 23
-
-
Jordan, P.1
Snyder, L.A.S.2
Saunders, N.J.3
-
33
-
-
25144494777
-
Intragenic tandem repeats generate functional variability
-
10.1038/ng1618, 1462868, 16086015
-
Verstrepen KJ, Jansen A, Lewitter F, Fink GR. Intragenic tandem repeats generate functional variability. Nat Genet 2005, 37:986-990. 10.1038/ng1618, 1462868, 16086015.
-
(2005)
Nat Genet
, vol.37
, pp. 986-990
-
-
Verstrepen, K.J.1
Jansen, A.2
Lewitter, F.3
Fink, G.R.4
-
34
-
-
0032855564
-
Minisatellite instability and germline mutation
-
10.1007/s000180050402, 10526579
-
Bois P, Jeffreys AJ. Minisatellite instability and germline mutation. Cell Mol Life Sci 1999, 55:1636-1648. 10.1007/s000180050402, 10526579.
-
(1999)
Cell Mol Life Sci
, vol.55
, pp. 1636-1648
-
-
Bois, P.1
Jeffreys, A.J.2
-
35
-
-
33645114487
-
Intraspecific genetic variation in Paramecium, revealed by mitochondrial cytochrome c oxidase I sequences
-
10.1111/j.1550-7408.2005.00068.x, 16441579
-
Barth D, Krenek S, Fokin SI, Berendonk TU. Intraspecific genetic variation in Paramecium, revealed by mitochondrial cytochrome c oxidase I sequences. J Eukaryot Microbiol 2006, 53:20-25. 10.1111/j.1550-7408.2005.00068.x, 16441579.
-
(2006)
J Eukaryot Microbiol
, vol.53
, pp. 20-25
-
-
Barth, D.1
Krenek, S.2
Fokin, S.I.3
Berendonk, T.U.4
-
36
-
-
35648972049
-
Barcoding ciliates: a comprehensive study of 75 isolates of the genus Tetrahymena
-
10.1099/ijs.0.64865-0, 17911319
-
Chantangsi C, Lynn DH, Brandl MT, Cole JC, Hetrick N, Ikonomi P. Barcoding ciliates: a comprehensive study of 75 isolates of the genus Tetrahymena. Int J Syst Evol Microbiol 2007, 57:2412-2425. 10.1099/ijs.0.64865-0, 17911319.
-
(2007)
Int J Syst Evol Microbiol
, vol.57
, pp. 2412-2425
-
-
Chantangsi, C.1
Lynn, D.H.2
Brandl, M.T.3
Cole, J.C.4
Hetrick, N.5
Ikonomi, P.6
-
37
-
-
0030638983
-
Rapid directional walk within DNA clones by step-out PCR
-
Wesley UV, Wesley CS. Rapid directional walk within DNA clones by step-out PCR. Methods Mol Biol 1997, 67:279-285.
-
(1997)
Methods Mol Biol
, vol.67
, pp. 279-285
-
-
Wesley, U.V.1
Wesley, C.S.2
-
38
-
-
7744234354
-
Single oligonucleotide nested PCR: a rapid method for the isolation of genes and their flanking regions from expressed sequence tags
-
10.1007/s00294-004-0524-6, 15349749
-
Antal Z, Rascle C, Fevre M, Bruel C. Single oligonucleotide nested PCR: a rapid method for the isolation of genes and their flanking regions from expressed sequence tags. Curr Genet 2004, 46:240-246. 10.1007/s00294-004-0524-6, 15349749.
-
(2004)
Curr Genet
, vol.46
, pp. 240-246
-
-
Antal, Z.1
Rascle, C.2
Fevre, M.3
Bruel, C.4
-
39
-
-
0031045804
-
Direct amplification of unknown genes and fragments by Uneven polymerase chain reaction
-
10.1016/S0378-1119(96)00637-3, 9055815
-
Chen X, Wu R. Direct amplification of unknown genes and fragments by Uneven polymerase chain reaction. Gene 1997, 185:195-199. 10.1016/S0378-1119(96)00637-3, 9055815.
-
(1997)
Gene
, vol.185
, pp. 195-199
-
-
Chen, X.1
Wu, R.2
-
40
-
-
0002051540
-
BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
-
Hall TA. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Res Symp Ser 1999, 41:95-98.
-
(1999)
Nucleic Acids Res Symp Ser
, vol.41
, pp. 95-98
-
-
Hall, T.A.1
-
41
-
-
0142119484
-
Viewing and annotating sequence data with Artemis
-
10.1093/bib/4.2.124, 12846394
-
Berriman M, Rutherford K. Viewing and annotating sequence data with Artemis. Brief Bioinformatics 2003, 4:124-132. 10.1093/bib/4.2.124, 12846394.
-
(2003)
Brief Bioinformatics
, vol.4
, pp. 124-132
-
-
Berriman, M.1
Rutherford, K.2
-
42
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
-
10.1093/nar/25.17.3389, 146917, 9254694
-
Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 1997, 25:3389-3402. 10.1093/nar/25.17.3389, 146917, 9254694.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schäffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
43
-
-
0030854739
-
TRNAscan SE: a program for improved detection of transfer RNA genes in genomic sequence
-
10.1093/nar/25.5.955, 146525, 9023104
-
Lowe TM, Eddy SR. tRNAscan SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res 1997, 25:955-964. 10.1093/nar/25.5.955, 146525, 9023104.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 955-964
-
-
Lowe, T.M.1
Eddy, S.R.2
-
44
-
-
34547781750
-
MEGA4: Molecular evolutionary genetics analysis (MEGA) software version 4.0
-
10.1093/molbev/msm092, 17488738
-
Tamura K, Dudley J, Nei M, Kumar S. MEGA4: Molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 2007, 24:1596-1599. 10.1093/molbev/msm092, 17488738.
-
(2007)
Mol Biol Evol
, vol.24
, pp. 1596-1599
-
-
Tamura, K.1
Dudley, J.2
Nei, M.3
Kumar, S.4
-
45
-
-
0034199476
-
The Sequence Manipulation Suite: JavaScript programs for analyzing and formatting protein and DNA sequences
-
Stothard P. The Sequence Manipulation Suite: JavaScript programs for analyzing and formatting protein and DNA sequences. BioTechniques 2000, 28:1102-1104.
-
(2000)
BioTechniques
, vol.28
, pp. 1102-1104
-
-
Stothard, P.1
-
46
-
-
0025318864
-
The 'effective number of codons' used in a gene
-
10.1016/0378-1119(90)90491-9, 2110097
-
Wright F. The 'effective number of codons' used in a gene. Gene 1990, 87:23-29. 10.1016/0378-1119(90)90491-9, 2110097.
-
(1990)
Gene
, vol.87
, pp. 23-29
-
-
Wright, F.1
-
47
-
-
0028168856
-
A codon-based model of nucleotide substitution for protein-coding DNA sequences
-
Goldman N, Yang Z. A codon-based model of nucleotide substitution for protein-coding DNA sequences. Mol Biol Evol 1994, 11:725-736.
-
(1994)
Mol Biol Evol
, vol.11
, pp. 725-736
-
-
Goldman, N.1
Yang, Z.2
|