Complete sequence of the mitochondrial genome of Tetrahymena pyriformis and comparison with Paramecium aurelia mitochondrial DNA

Journal of Molecular Biology

Volumn 297, Issue 2, 2000, Pages 365-380

  Burger, Gertraud ^a   Zhu, Yun ^a   Littlejohn, Tim G ^a   Greenwood, Spencer J ^b   Schnare, Murray N ^b   Lang, B Franz ^a   Gray, Michael W ^b  

^a UNIVERSITÉ DE MONTRÉAL   (Canada)

^b DALHOUSIE UNIVERSITY   (Canada)

Author keywords

Alveolates; Ciliates; Genetic map; Phylogeny; Protists

Indexed keywords

MITOCHONDRIAL DNA; TRANSFER RNA;

AMINO ACID SEQUENCE; ARTICLE; CILIATE; CODON; DNA DETERMINATION; DNA POLYMORPHISM; GENE ISOLATION; GENE MAPPING; GENE SEQUENCE; GENE STRUCTURE; GENOME; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PARAMECIUM; PARAMECIUM AURELIA; PHYLOGENY; PRIORITY JOURNAL; SEQUENCE ANALYSIS; TELOMERE; TETRAHYMENA PYRIFORMIS; UNINDEXED SEQUENCE;

PARAMECIUM AURELIA; TETRAHYMENA PYRIFORMIS;

EID: 0034708339     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1006/jmbi.2000.3529     Document Type: Article

References (83)

1. Basic local alignment search tool
2. Mitochondrial DNA of Tetrahymena pyriformis strain ST contains a long terminal duplication-inversion
3. Origin and evolution of the slime molds
4. New insights into the phylogeny of eukaryotes based on ciliate Hsp70 sequences
5. The mitochondrial DNA of the amoeboid protozoon, Acanthamoeba castellanii: Complete sequence, gene content and genome organization
6. Kingdom protozoa and its 18 phyla
7. Native and imported transfer RNA in mitochondria
8. A nomenclature for sequenced plant genes
9. The formation of several mitochondrial enzymes during the cell cycle in heat-synchronized Tetrahymena pyriformis ST
10. Mitochondrial genomes of the ciliates
11. A sequence assembly and editing program for efficient management of large projects
12. Expression of mitochondrial protein-coding genes in Tetrahymena pyriformis
13. The extrachromosomal DNAs of apicomplexan parasites
14. Homologies between the contiguous and fragmented rRNAs of the two Plasmodium falciparum extrachromosomal DNAs are limited to core sequences
15. Confidence limits on phylogenies: An approach using the bootstrap
16. Phylogenies from molecular sequences: Inference and reliability
17. Construction of phylogenetic trees
18. Mitochondrial deoxyribonucleic acid from Tetrahymena pyriformis and its kinetic complexity
19. Ribosomal RNA sequences of Sarcocystis muris, Theileria annulata and Crypthecodinium cohnii reveal evolutionary relationships among apicomplexans, dinoflagellates, and ciliates
20. The structure of Tetrahymena pyriformis mitochondrial DNA. I. Strain differences and occurrence of inverted repetitions
21. The organization of ribosomal RNA genes in the mitochondrial DNA of Tetrahymena pyriformis strain ST
22. Conservation of the sequence and position of the ribosomal RNA genes in Tetrahymena pyriformis mitochondrial DNA
23. The endosymbiont hypothesis revisited
24. Organellar evolution
25. Genome structure and gene content in protist mitochondrial DNAs
26. Rearranged coding segments, separated by a transfer RNA gene, specify the two parts of a discontinuous large subuniit ribosomal RNA in Tetrahymena pyriformis
27. Sequence heterogeneity in the duplicate large subunit ribosomal RNA genes of Tetrahymena pyriformis mitochondrial DNA
28. Nucleotide sequence and functional characterization of a mitochondrial tRNA(Trp) from Tetrahymena thermophila
29. Fast and sensitive multiple sequence alignments on a microcomputer
30. Algae or protozoa: Phylogenetic position of euglenophytes and dinoflagellates as inferred from mitochondrial sequences
31. A 7.1 kb linear DNA molecule of Theileria parva has scrambled rDNA sequences and open reading frames for mitochondrially encoded proteins
32. Maximum likelihood inference of protein phylogeny and the origin of chloroplasts
33. Isolation and characterization of ribosomal ribonucleic acids
34. The organelle genome database project (GOBASE)
35. Unexpectedly long 14 S ribosomal RNA gene in Tetrahymena mitochondria
36. A collection of programs for nucleic acid and protein analysis, written in FORTRAN 77 for IBM-PC compatible microcomputers
37. A rapid, high resolution DNA sequencing gel system
38. An ancestral mitochondrial DNA resembling a eubacterial genome in miniature
39. Formation of ribosomes in Tetrahymena pyriformis
40. Editing of transfer RNAs in Acanthamoeba castellanii mitochondria
41. Divergent evolutionary constraints on mitochondrial and nuclear genomes of malaria parasites
42. The terminus of Tetrahymena pyriformis mtDNA contains a tandemly repeated 31 bp sequence
43. Mitochondrial telomeres: Surprising diversity of repeated telomeric DNA sequences among six species of Tetrahymena
44. Phylogenetic relationships and altered genome structures among Tetrahymena mitochondrial DNAs
45. The cytochrome oxidase subunit 1 gene (cox1) from the dinoflagellate, Crypthecodinium cohnii
46. Gene organization deduced from the complete sequence of liverwort Marchantia polymorpha mitochondrial DNA. A primitive form of plant mitochondrial genome
47. Rapid isolation of nuclei from carrot suspension culture cells using a BioNebulizer
48. RNA editing missing in mitochondria
49. The fungal mitochondrial genome project: Evolution of fungal mitochondrial genomes and their gene expression
50. Eukaryote origins and protistan diversity
51. Rapid and sensitive sequence comparison with FASTP and FASTA
52. Analysis of NADH dehydrogenase proteins, ATPase subunit 9, cytochrome b, and ribosomal protein L14 encoded in the mitochondrial DNA of Paramecium
53. Nucleotide sequence of the mitochondrial genome of Paramecium
54. A comprehensive sequence analysis program for the IBM personal computer
55. The neighbor-joining method: A new method for reconstructing phylogenetic trees
56. DNA sequencing with chain-terminating inhibitors
57. Protist evolution and phylogeny as discerned from small subunit ribosomal RNA sequence comparisons
58. Phenylalanine and tyrosine transfer RNAs encoded by Tetrahymena pyriformis mitochondrial DNA: Primary sequence, post-transcriptional modifications, and gene localization
59. A discontinuous small subunit ribosomal RNA in Tetrahymena pyriformis mitochondria
60. Primary sequence and post-transcriptional modification pattern of an unusual mitochondrial tRNA(Met) from Tetrahymena pyriformis
61. Complete nucleotide sequence of the Plasmodium vivax 6 kb element
62. Pattern-induced multi-sequence alignment (PIMA) algorithm employing secondary structure-dependent gap penalties for use in comparative protein modelling
63. The genetic data environment, an expandable GUI for multiple sequence analysis
64. Evolution of eukaryotic microorganisms and their small subunit ribosomal RNAs
65. Early evolution and the origin of eukaryotes
66. History assignment: When was the mitochondrion founded?
67. The Staden sequence analysis package
68. Structural compensation in atypical mitochondrial tRNAs
69. Quartet puzzling: A quartet maximum-likelihood method for reconstructing tree topologies
70. Native and imported tRNAs in Tetrahymena mitochondria: Evidence for their involvement in intramitochondrial translation
71. Nucleotide sequences of three tRNA genes encoded in Tetrahymena mitochondrial DNA
72. Two dimensional polyacrylamide gel electrophoresis analysis of Tetrahymena mitochondrial tRNA
73. The tRNA(glu) (anticodon TTC) gene and its upstream sequence coding for a homolog of the E. coli large ribosome-subunit protein L14 in the Tetrahymena mitochondrial genome
74. Size and structural variations of mitochondrial DNA
75. Two transfer RNA sequences abut the large ribosomal RNA gene in Tetrahymena mitochondrial DNA: tRNA(leu) (anticodon UAA) and tRNA(met) (anticodon CAU)
76. Biogenesis of respiratory cytochromes in bacteria
77. Accumulation of replicative intermediates of mitochondrial DNA in Tetrahymena pyriformis grown in ethidium bromide
78. Sequences similar to genes for two mitochondrial proteins and portions of ribosomal RNA in tandemly arrayed 6-kilobase-pair DNA of a malarial parasite
79. Structural features of Plasmodium cytochrome b that may underlie susceptibility to 8-aminoquinolines and hydroxynaphthoquinones
80. Production of single-stranded plasmid DNA
81. Extrachromosomal DNA in the Apicomplexa
82. 2-terminal extension and a 108 amino acid insert