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Volumn 6, Issue 5, 2011, Pages

Characterization of protein-DNA interactions using protein microarrays

Author keywords

[No Author keywords available]

Indexed keywords

DOUBLE STRANDED DNA; OLIGONUCLEOTIDE; TRANSCRIPTION FACTOR;

EID: 79957567699     PISSN: None     EISSN: 15596095     Source Type: Journal    
DOI: 10.1101/pdb.prot5614     Document Type: Article
Times cited : (15)

References (36)
  • 3
    • 7444267933 scopus 로고    scopus 로고
    • A gateway-compatible yeast one-hybrid system
    • [Abstract/Free Full Text]
    • Deplancke B, Dupuy D, Vidal M, Walhout AJ. 2004. A gateway-compatible yeast one-hybrid system. Genome Res 14: 2093-2101.[Abstract/Free Full Text]
    • (2004) Genome Res , vol.14 , pp. 2093-2101
    • Deplancke, B.1    Dupuy, D.2    Vidal, M.3    Walhout, A.J.4
  • 5
    • 33747064917 scopus 로고    scopus 로고
    • How does DNA sequence motif discovery work?
    • [Medline]
    • D'Haeseleer P. 2006. How does DNA sequence motif discovery work? Nat Biotechnol 24: 959-961.[Medline]
    • (2006) Nat Biotechnol , vol.24 , pp. 959-961
    • D'haeseleer, P.1
  • 6
    • 73149086161 scopus 로고    scopus 로고
    • A protein microarray-based analysis of S-nitrosylation
    • [Abstract/Free Full Text]
    • Foster MW, Forrester MT, Stamler JS. 2009. A protein microarray-based analysis of S-nitrosylation. Proc Natl Acad Sci 106: 18948-18953.[Abstract/Free Full Text]
    • (2009) Proc Natl Acad Sci , vol.106 , pp. 18948-18953
    • Foster, M.W.1    Forrester, M.T.2    Stamler, J.S.3
  • 7
    • 5644229499 scopus 로고    scopus 로고
    • Regulation of gene expression by a metabolic enzyme
    • [Abstract/Free Full Text]
    • Hall DA, Zhu H, Zhu X, Royce T, Gerstein M, Snyder M. 2004. Regulation of gene expression by a metabolic enzyme. Science 306: 482-484.[Abstract/Free Full Text]
    • (2004) Science , vol.306 , pp. 482-484
    • Hall, D.A.1    Zhu, H.2    Zhu, X.3    Royce, T.4    Gerstein, M.5    Snyder, M.6
  • 8
    • 30344439849 scopus 로고    scopus 로고
    • Genome-wide prediction of mammalian enhancers based on analysis of transcription-factor binding affinity
    • [Medline]
    • Hallikas O, Palin K, Sinjushina N, Rautiainen R, Partanen J, Ukkonen E, Taipale J. 2006. Genome-wide prediction of mammalian enhancers based on analysis of transcription-factor binding affinity. Cell 124: 47-59.[Medline]
    • (2006) Cell , vol.124 , pp. 47-59
    • Hallikas, O.1    Palin, K.2    Sinjushina, N.3    Rautiainen, R.4    Partanen, J.5    Ukkonen, E.6    Taipale, J.7
  • 9
    • 33745614618 scopus 로고    scopus 로고
    • Linking DNA-binding proteins to their recognition sequences by using protein microarrays
    • [Abstract/Free Full Text]
    • Ho SW, Jona G, Chen CT, Johnston M, Snyder M. 2006. Linking DNA-binding proteins to their recognition sequences by using protein microarrays. Proc Natl Acad Sci 103: 9940-9945.[Abstract/Free Full Text]
    • (2006) Proc Natl Acad Sci , vol.103 , pp. 9940-9945
    • Ho, S.W.1    Jona, G.2    Chen, C.T.3    Johnston, M.4    Snyder, M.5
  • 10
    • 34447557663 scopus 로고    scopus 로고
    • A protein chip approach for high-throughput antigen identification and characterization
    • [Medline]
    • Hu S, Li Y, Liu G, Song Q, Wang L, Han Y, Zhang Y, Song Y, Yao X, Tao Y, et al. 2007. A protein chip approach for high-throughput antigen identification and characterization. Proteomics 7: 2151-2161.[Medline]
    • (2007) Proteomics , vol.7 , pp. 2151-2161
    • Hu, S.1    Li, Y.2    Liu, G.3    Song, Q.4    Wang, L.5    Han, Y.6    Zhang, Y.7    Song, Y.8    Yao, X.9    Tao, Y.10
  • 11
    • 70350340058 scopus 로고    scopus 로고
    • Profiling the human protein-DNA interactome reveals ERK2 as a transcriptional repressor of interferon signaling
    • [Medline]
    • Hu S, Xie Z, Onishi A, Yu X, Jiang L, Lin J, Rho HS, Woodard C, Wang H, Jeong JS, et al. 2009. Profiling the human protein-DNA interactome reveals ERK2 as a transcriptional repressor of interferon signaling. Cell 139: 610-622.[Medline]
    • (2009) Cell , vol.139 , pp. 610-622
    • Hu, S.1    Xie, Z.2    Onishi, A.3    Yu, X.4    Jiang, L.5    Lin, J.6    Rho, H.S.7    Woodard, C.8    Wang, H.9    Jeong, J.S.10
  • 12
    • 9344247454 scopus 로고    scopus 로고
    • Finding new components of the target of rapamycin (TOR) signaling network through chemical genetics and proteome chips
    • [Abstract/Free Full Text]
    • Huang J, Zhu H, Haggarty SJ, Spring DR, Hwang H, Jin F, Snyder M, Schreiber SL. 2004. Finding new components of the target of rapamycin (TOR) signaling network through chemical genetics and proteome chips. Proc Natl Acad Sci 101: 16594-16599.[Abstract/Free Full Text]
    • (2004) Proc Natl Acad Sci , vol.101 , pp. 16594-16599
    • Huang, J.1    Zhu, H.2    Haggarty, S.J.3    Spring, D.R.4    Hwang, H.5    Jin, F.6    Snyder, M.7    Schreiber, S.L.8
  • 13
    • 30544449081 scopus 로고    scopus 로고
    • A quantitative protein interaction network for the ErbB receptors using protein microarrays
    • [Medline]
    • Jones RB, Gordus A, Krall JA, MacBeath G. 2006. A quantitative protein interaction network for the ErbB receptors using protein microarrays. Nature 439: 168-174.[Medline]
    • (2006) Nature , vol.439 , pp. 168-174
    • Jones, R.B.1    Gordus, A.2    Krall, J.A.3    Macbeath, G.4
  • 14
    • 70349333832 scopus 로고    scopus 로고
    • Global analysis of the glycoproteome in Saccharomyces cerevisiae reveals new roles for protein glycosylation in eukaryotes
    • doi: 10.1038/msb.2009.64.[Medline]
    • Kung LA, Tao SC, Qian J, Smith MG, Snyder M, Zhu H. 2009. Global analysis of the glycoproteome in Saccharomyces cerevisiae reveals new roles for protein glycosylation in eukaryotes. Mol Syst Biol 5: 308. doi: 10.1038/msb.2009.64.[Medline]
    • (2009) Mol Syst Biol , vol.5 , pp. 308
    • Kung, L.A.1    Tao, S.C.2    Qian, J.3    Smith, M.G.4    Snyder, M.5    Zhu, H.6
  • 15
    • 0033388858 scopus 로고    scopus 로고
    • In vivo cross-linking and immunoprecipitation for studying dynamic Protein: DNA associations in a chromatin environment
    • [Medline]
    • Kuo MH, Allis CD. 1999. In vivo cross-linking and immunoprecipitation for studying dynamic Protein:DNA associations in a chromatin environment. Methods 19: 425-433.[Medline]
    • (1999) Methods , vol.19 , pp. 425-433
    • Kuo, M.H.1    Allis, C.D.2
  • 16
    • 62149143727 scopus 로고    scopus 로고
    • Protein acetylation microarray reveals that NuA4 controls key metabolic target regulating gluconeogenesis
    • [Medline]
    • Lin YY, Lu JY, Zhang J, Walter W, Dang W, Wan J, Tao SC, Qian J, Zhao Y, Boeke JD, et al. 2009. Protein acetylation microarray reveals that NuA4 controls key metabolic target regulating gluconeogenesis. Cell 136: 1073-1084.[Medline]
    • (2009) Cell , vol.136 , pp. 1073-1084
    • Lin, Y.Y.1    Lu, J.Y.2    Zhang, J.3    Walter, W.4    Dang, W.5    Wan, J.6    Tao, S.C.7    Qian, J.8    Zhao, Y.9    Boeke, J.D.10
  • 18
    • 39549092828 scopus 로고    scopus 로고
    • Glycomics: Towards bioinformatic approaches to understanding glycosylation
    • [Medline]
    • Mahal LK. 2008. Glycomics: Towards bioinformatic approaches to understanding glycosylation. Anticancer Agents Med Chem 8: 37-51.[Medline]
    • (2008) Anticancer Agents Med Chem , vol.8 , pp. 37-51
    • Mahal, L.K.1
  • 19
    • 23444446753 scopus 로고    scopus 로고
    • A bacterial one-hybrid system for determining the DNA-binding specificity of transcription factors
    • [Medline]
    • Meng X, Brodsky MH, Wolfe SA. 2005. A bacterial one-hybrid system for determining the DNA-binding specificity of transcription factors. Nat Biotechnol 23: 988-994.[Medline]
    • (2005) Nat Biotechnol , vol.23 , pp. 988-994
    • Meng, X.1    Brodsky, M.H.2    Wolfe, S.A.3
  • 20
    • 45449111373 scopus 로고    scopus 로고
    • Analysis of homeodomain specificities allows the family-wide prediction of preferred recognition sites
    • [Medline]
    • Noyes MB, Christensen RG, Wakabayashi A, Stormo GD, Brodsky MH, Wolfe SA. 2008. Analysis of homeodomain specificities allows the family-wide prediction of preferred recognition sites. Cell 133: 1277-1289.[Medline]
    • (2008) Cell , vol.133 , pp. 1277-1289
    • Noyes, M.B.1    Christensen, R.G.2    Wakabayashi, A.3    Stormo, G.D.4    Brodsky, M.H.5    Wolfe, S.A.6
  • 21
    • 33846393568 scopus 로고    scopus 로고
    • Chip-based analysis of SUMO (small ubiquitin-like modifier) conjugation to a target protein
    • [Medline]
    • Oh YH, Hong MY, Jin Z, Lee T, Han MK, Park S, Kim HS. 2007. Chip-based analysis of SUMO (small ubiquitin-like modifier) conjugation to a target protein. Biosens Bioelectron 22: 1260-1267.[Medline]
    • (2007) Biosens Bioelectron , vol.22 , pp. 1260-1267
    • Oh, Y.H.1    Hong, M.Y.2    Jin, Z.3    Lee, T.4    Han, M.K.5    Park, S.6    Kim, H.S.7
  • 25
    • 0036022523 scopus 로고    scopus 로고
    • High-throughput SELEX SAGE method for quantitative modeling of transcription-factor binding sites
    • [Medline]
    • Roulet E, Busso S, Camargo AA, Simpson AJ, Mermod N, Bucher P. 2002. High-throughput SELEX SAGE method for quantitative modeling of transcription-factor binding sites. Nat Biotechnol 20: 831-835.[Medline]
    • (2002) Nat Biotechnol , vol.20 , pp. 831-835
    • Roulet, E.1    Busso, S.2    Camargo, A.A.3    Simpson, A.J.4    Mermod, N.5    Bucher, P.6
  • 26
    • 44649091314 scopus 로고    scopus 로고
    • Identification of novel substrates for Cdk5 and new targets for Cdk5 inhibitors using high-density protein microarrays
    • [Medline]
    • Schnack C, Hengerer B, Gillardon F. 2008. Identification of novel substrates for Cdk5 and new targets for Cdk5 inhibitors using high-density protein microarrays. Proteomics 8: 1980-1986.[Medline]
    • (2008) Proteomics , vol.8 , pp. 1980-1986
    • Schnack, C.1    Hengerer, B.2    Gillardon, F.3
  • 27
    • 73649129599 scopus 로고    scopus 로고
    • Novel autoimmune hepatitis-specific autoantigens identified using protein microarray technology
    • [Medline]
    • Song Q, Liu G, Hu S, Zhang Y, Tao Y, Han Y, Zeng H, Huang W, Li F, Chen P, et al. 2010. Novel autoimmune hepatitis-specific autoantigens identified using protein microarray technology. J Proteome Res 9: 30-39.[Medline]
    • (2010) J Proteome Res , vol.9 , pp. 30-39
    • Song, Q.1    Liu, G.2    Hu, S.3    Zhang, Y.4    Tao, Y.5    Han, Y.6    Zeng, H.7    Huang, W.8    Li, F.9    Chen, P.10
  • 28
  • 29
    • 53049096773 scopus 로고    scopus 로고
    • Lectin microarrays identify cell-specific and functionally significant cell surface glycan markers
    • [Abstract/Free Full Text]
    • Tao SC, Li Y, Zhou J, Qian J, Schnaar RL, Zhang Y, Goldstein IJ, Zhu H, Schneck JP. 2008. Lectin microarrays identify cell-specific and functionally significant cell surface glycan markers. Glycobiology 18: 761-769.[Abstract/Free Full Text]
    • (2008) Glycobiology , vol.18 , pp. 761-769
    • Tao, S.C.1    Li, Y.2    Zhou, J.3    Qian, J.4    Schnaar, R.L.5    Zhang, Y.6    Goldstein, I.J.7    Zhu, H.8    Schneck, J.P.9
  • 30
    • 62549128139 scopus 로고    scopus 로고
    • A census of human transcription factors: Function, expression and evolution
    • [Medline]
    • Vaquerizas JM, Kummerfeld SK, Teichmann SA, Luscombe NM. 2009. A census of human transcription factors: Function, expression and evolution. Nat Rev Genet 10: 252-263.[Medline]
    • (2009) Nat Rev Genet , vol.10 , pp. 252-263
    • Vaquerizas, J.M.1    Kummerfeld, S.K.2    Teichmann, S.A.3    Luscombe, N.M.4
  • 31
    • 77950472891 scopus 로고    scopus 로고
    • hPDI: A database of experimental human protein-DNA interactions
    • [Abstract/Free Full Text]
    • Xie Z, Hu S, Blackshaw S, Zhu H, Qian J. 2010. hPDI: A database of experimental human protein-DNA interactions. Bioinformatics 26: 287-289.[Abstract/Free Full Text]
    • (2010) Bioinformatics , vol.26 , pp. 287-289
    • Xie, Z.1    Hu, S.2    Blackshaw, S.3    Zhu, H.4    Qian, J.5
  • 35
    • 33847705714 scopus 로고    scopus 로고
    • ProCAT: A data analysis approach for protein microarrays
    • doi: 10.1186/gb-2006-7-11-r110.[Medline]
    • Zhu X, Gerstein M, Snyder M. 2006b. ProCAT: A data analysis approach for protein microarrays. Genome Biol 7: R110. doi: 10.1186/gb-2006-7-11-r110.[Medline]
    • (2006) Genome Biol , vol.7
    • Zhu, X.1    Gerstein, M.2    Snyder, M.3


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