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Volumn 6, Issue 5, 2011, Pages

HIVToolbox, an integrated web application for investigating HIV

Author keywords

[No Author keywords available]

Indexed keywords

INTEGRASE; VIRUS PROTEIN; CASEIN KINASE II;

EID: 79957476320     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0020122     Document Type: Article
Times cited : (7)

References (63)
  • 1
    • 0033522811 scopus 로고    scopus 로고
    • Confronting the HIV pandemic
    • Nathanson N, Auerbach JD, (1999) Confronting the HIV pandemic. Science 284: 1619.
    • (1999) Science , vol.284 , pp. 1619
    • Nathanson, N.1    Auerbach, J.D.2
  • 2
    • 24344496912 scopus 로고    scopus 로고
    • Emerging drug targets for antiretroviral therapy
    • Reeves JD, Piefier AJ, (2005) Emerging drug targets for antiretroviral therapy. Drugs 65: 1747-1766.
    • (2005) Drugs , vol.65 , pp. 1747-1766
    • Reeves, J.D.1    Piefier, A.J.2
  • 3
    • 18144393851 scopus 로고    scopus 로고
    • BioAfrica's HIV-1 Proteomics Resource: Combining protein data with bioinformatics tools
    • Doherty RS, De Oliveira T, Seebregts C, Danaviah S, Gordon M, et al. (2005) BioAfrica's HIV-1 Proteomics Resource: Combining protein data with bioinformatics tools. Retrovirology 2: 18.
    • (2005) Retrovirology , vol.2 , pp. 18
    • Doherty, R.S.1    De Oliveira, T.2    Seebregts, C.3    Danaviah, S.4    Gordon, M.5
  • 4
    • 21144431528 scopus 로고    scopus 로고
    • HIV Sequence Compendium, 2005
    • Los Alamos, NM, Theoretical Biology and Biophysics Group, Los Alamos National Laboratory
    • Leitner T, Foley B, Hahn B, Marx P, McCutchan F, et al. (2005) HIV Sequence Compendium, 2005. Los Alamos, NM Theoretical Biology and Biophysics Group, Los Alamos National Laboratory.
    • (2005)
    • Leitner, T.1    Foley, B.2    Hahn, B.3    Marx, P.4    McCutchan, F.5
  • 5
    • 0037250521 scopus 로고    scopus 로고
    • Human immunodeficiency virus reverse transcriptase and protease sequence database
    • Rhee SY, Gonzales MJ, Kantor R, Betts BJ, Ravela J, et al. (2003) Human immunodeficiency virus reverse transcriptase and protease sequence database. Nucleic Acids Res 31: 298-303.
    • (2003) Nucleic Acids Res , vol.31 , pp. 298-303
    • Rhee, S.Y.1    Gonzales, M.J.2    Kantor, R.3    Betts, B.J.4    Ravela, J.5
  • 6
    • 58149200940 scopus 로고    scopus 로고
    • Human immunodeficiency virus type 1, human protein interaction database at NCBI
    • Fu W, Sanders-Beer BE, Katz KS, Maglott DR, Pruitt KD, et al. (2009) Human immunodeficiency virus type 1, human protein interaction database at NCBI. Nucleic Acids Res 37: D417-D422.
    • (2009) Nucleic Acids Res , vol.37 , pp. 417-422
    • Fu, W.1    Sanders-Beer, B.E.2    Katz, K.S.3    Maglott, D.R.4    Pruitt, K.D.5
  • 7
    • 75549088687 scopus 로고    scopus 로고
    • Database resources of the National Center for Biotechnology Information
    • doi:10.1093/nar/gkp967
    • Sayers EW, Barrett T, Benson DA, Bolton E, Bryant SH, et al. (2010) Database resources of the National Center for Biotechnology Information. Nucleic Acids Res 38: D5-16 doi:10.1093/nar/gkp967.
    • (2010) Nucleic Acids Res , vol.38
    • Sayers, E.W.1    Barrett, T.2    Benson, D.A.3    Bolton, E.4    Bryant, S.H.5
  • 8
    • 0037126629 scopus 로고    scopus 로고
    • Structure of a two-domain fragment of HIV-1 integrase: implications for domain organization in the intact protein
    • doi:10.1093/emboj/20.24.7333
    • Wang JY, Ling H, Yang W, Craigie R, (2001) Structure of a two-domain fragment of HIV-1 integrase: implications for domain organization in the intact protein. EMBO J 20: 7333-7343 doi:10.1093/emboj/20.24.7333.
    • (2001) EMBO J , vol.20 , pp. 7333-7343
    • Wang, J.Y.1    Ling, H.2    Yang, W.3    Craigie, R.4
  • 9
    • 58549092798 scopus 로고    scopus 로고
    • Functional and structural characterization of the integrase from the prototype foamy virus
    • doi:10.1093/nar/gkn938
    • Valkov E, Gupta SS, Hare S, Helander A, Roversi P, et al. (2009) Functional and structural characterization of the integrase from the prototype foamy virus. Nucleic Acids Res 37: 243-255 doi:10.1093/nar/gkn938.
    • (2009) Nucleic Acids Res , vol.37 , pp. 243-255
    • Valkov, E.1    Gupta, S.S.2    Hare, S.3    Helander, A.4    Roversi, P.5
  • 10
    • 0034682511 scopus 로고    scopus 로고
    • Crystal structure of the HIV-1 integrase catalytic core and C-terminal domains: a model for viral DNA binding
    • doi:10.1073/pnas.150220297
    • Chen JC, Krucinski J, Miercke LJ, Finer-Moore JS, Tang AH, et al. (2000) Crystal structure of the HIV-1 integrase catalytic core and C-terminal domains: a model for viral DNA binding. Proc Natl Acad Sci U S A 97: 8233-8238 doi:10.1073/pnas.150220297.
    • (2000) Proc Natl Acad Sci U S A , vol.97 , pp. 8233-8238
    • Chen, J.C.1    Krucinski, J.2    Miercke, L.J.3    Finer-Moore, J.S.4    Tang, A.H.5
  • 11
    • 0030986376 scopus 로고    scopus 로고
    • Solution structure of the N-terminal zinc binding domain of HIV-1 integrase
    • Cai M, Zheng R, Caffrey M, Craigie R, Clore GM, et al. (1997) Solution structure of the N-terminal zinc binding domain of HIV-1 integrase. Nat Struct Biol 4: 567-577.
    • (1997) Nat Struct Biol , vol.4 , pp. 567-577
    • Cai, M.1    Zheng, R.2    Caffrey, M.3    Craigie, R.4    Clore, G.M.5
  • 12
    • 0027470432 scopus 로고
    • Site-directed mutagenesis of HIV-1 integrase demonstrates differential effects on integrase functions in vitro
    • Leavitt AD, Shiue L, Varmus HE, (1993) Site-directed mutagenesis of HIV-1 integrase demonstrates differential effects on integrase functions in vitro. J Biol Chem 268: 2113-2119.
    • (1993) J Biol Chem , vol.268 , pp. 2113-2119
    • Leavitt, A.D.1    Shiue, L.2    Varmus, H.E.3
  • 14
    • 0034824775 scopus 로고    scopus 로고
    • Mapping DNA-binding sites of HIV-1 integrase by protein footprinting
    • Dirac AM, Kjems J, (2001) Mapping DNA-binding sites of HIV-1 integrase by protein footprinting. Eur J Biochem 268: 743-751.
    • (2001) Eur J Biochem , vol.268 , pp. 743-751
    • Dirac, A.M.1    Kjems, J.2
  • 15
    • 0028034050 scopus 로고
    • Characterization of the minimal DNA-binding domain of the HIV integrase protein
    • Lutzke RA, Vink C, Plasterk RH, (1994) Characterization of the minimal DNA-binding domain of the HIV integrase protein. Nucleic Acids Res 22: 4125-4131.
    • (1994) Nucleic Acids Res , vol.22 , pp. 4125-4131
    • Lutzke, R.A.1    Vink, C.2    Plasterk, R.H.3
  • 16
    • 0001166515 scopus 로고    scopus 로고
    • Structure-based mutational analysis of the C-terminal DNA-binding domain of human immunodeficiency virus type 1 integrase: critical residues for protein oligomerization and DNA binding
    • Lutzke RA, Plasterk RH, (1998) Structure-based mutational analysis of the C-terminal DNA-binding domain of human immunodeficiency virus type 1 integrase: critical residues for protein oligomerization and DNA binding. J Virol 72: 4841-4848.
    • (1998) J Virol , vol.72 , pp. 4841-4848
    • Lutzke, R.A.1    Plasterk, R.H.2
  • 17
    • 58149091892 scopus 로고    scopus 로고
    • Defining the DNA substrate binding sites on HIV-1 integrase
    • doi:10.1016/j.jmb.2008.10.083
    • Dolan J, Chen A, Weber IT, Harrison RW, Leis J, (2009) Defining the DNA substrate binding sites on HIV-1 integrase. J Mol Biol 385: 568-579 doi:10.1016/j.jmb.2008.10.083.
    • (2009) J Mol Biol , vol.385 , pp. 568-579
    • Dolan, J.1    Chen, A.2    Weber, I.T.3    Harrison, R.W.4    Leis, J.5
  • 18
    • 13444269378 scopus 로고    scopus 로고
    • Genetic analyses of DNA-binding mutants in the catalytic core domain of human immunodeficiency virus type 1 integrase
    • doi:10.1128/JVI.79.4.2493-2505.2005
    • Lu R, Limón A, Ghory HZ, Engelman A, (2005) Genetic analyses of DNA-binding mutants in the catalytic core domain of human immunodeficiency virus type 1 integrase. J Virol 79: 2493-2505 doi:10.1128/JVI.79.4.2493-2505.2005.
    • (2005) J Virol , vol.79 , pp. 2493-2505
    • Lu, R.1    Limón, A.2    Ghory, H.Z.3    Engelman, A.4
  • 19
    • 0032189652 scopus 로고    scopus 로고
    • Sequence specificity of viral end DNA binding by HIV-1 integrase reveals critical regions for protein-DNA interaction
    • doi:10.1093/emboj/17.19.5832
    • Esposito D, Craigie R, (1998) Sequence specificity of viral end DNA binding by HIV-1 integrase reveals critical regions for protein-DNA interaction. EMBO J 17: 5832-5843 doi:10.1093/emboj/17.19.5832.
    • (1998) EMBO J , vol.17 , pp. 5832-5843
    • Esposito, D.1    Craigie, R.2
  • 20
    • 0030828521 scopus 로고    scopus 로고
    • Critical contacts between HIV-1 integrase and viral DNA identified by structure-based analysis and photo-crosslinking
    • doi:10.1093/emboj/16.22.6849
    • Jenkins TM, Esposito D, Engelman A, Craigie R, (1997) Critical contacts between HIV-1 integrase and viral DNA identified by structure-based analysis and photo-crosslinking. EMBO J 16: 6849-6859 doi:10.1093/emboj/16.22.6849.
    • (1997) EMBO J , vol.16 , pp. 6849-6859
    • Jenkins, T.M.1    Esposito, D.2    Engelman, A.3    Craigie, R.4
  • 21
    • 0035796559 scopus 로고    scopus 로고
    • Human immunodeficiency virus type 1 integrase: arrangement of protein domains in active cDNA complexes
    • doi:10.1093/emboj/20.13.3565
    • Gao K, Butler SL, Bushman F, (2001) Human immunodeficiency virus type 1 integrase: arrangement of protein domains in active cDNA complexes. EMBO J 20: 3565-3576 doi:10.1093/emboj/20.13.3565.
    • (2001) EMBO J , vol.20 , pp. 3565-3576
    • Gao, K.1    Butler, S.L.2    Bushman, F.3
  • 22
    • 73149108847 scopus 로고    scopus 로고
    • Inhibition of HIV-1 integrase nuclear import and replication by a peptide bearing integrase putative nuclear localization signal
    • doi:10.1186/1742-4690-6-112
    • Levin A, Armon-Omer A, Rosenbluh J, Melamed-Book N, Graessmann A, et al. (2009) Inhibition of HIV-1 integrase nuclear import and replication by a peptide bearing integrase putative nuclear localization signal. Retrovirology 6: 112 doi:10.1186/1742-4690-6-112.
    • (2009) Retrovirology , vol.6 , pp. 112
    • Levin, A.1    Armon-Omer, A.2    Rosenbluh, J.3    Melamed-Book, N.4    Graessmann, A.5
  • 23
    • 1242272071 scopus 로고    scopus 로고
    • A synthetic peptide bearing the HIV-1 integrase 161-173 amino acid residues mediates active nuclear import and binding to importin alpha: characterization of a functional nuclear localization signal
    • doi:10.1016/j.jmb.2003.11.057
    • Armon-Omer A, Graessmann A, Loyter A, (2004) A synthetic peptide bearing the HIV-1 integrase 161-173 amino acid residues mediates active nuclear import and binding to importin alpha: characterization of a functional nuclear localization signal. J Mol Biol 336: 1117-1128 doi:10.1016/j.jmb.2003.11.057.
    • (2004) J Mol Biol , vol.336 , pp. 1117-1128
    • Armon-Omer, A.1    Graessmann, A.2    Loyter, A.3
  • 24
    • 34250369626 scopus 로고    scopus 로고
    • Interaction of human immunodeficiency virus type 1 integrase with cellular nuclear import receptor importin 7 and its impact on viral replication
    • doi:10.1074/jbc.M610546200
    • Ao Z, Huang G, Yao H, Xu Z, Labine M, et al. (2007) Interaction of human immunodeficiency virus type 1 integrase with cellular nuclear import receptor importin 7 and its impact on viral replication. J Biol Chem 282: 13456-13467 doi:10.1074/jbc.M610546200.
    • (2007) J Biol Chem , vol.282 , pp. 13456-13467
    • Ao, Z.1    Huang, G.2    Yao, H.3    Xu, Z.4    Labine, M.5
  • 25
    • 67349288596 scopus 로고    scopus 로고
    • Integrase interacts with nucleoporin NUP153 to mediate the nuclear import of human immunodeficiency virus type 1
    • doi:10.1128/JVI.02061-08
    • Woodward CL, Prakobwanakit S, Mosessian S, Chow SA, (2009) Integrase interacts with nucleoporin NUP153 to mediate the nuclear import of human immunodeficiency virus type 1. J Virol 83: 6522-6533 doi:10.1128/JVI.02061-08.
    • (2009) J Virol , vol.83 , pp. 6522-6533
    • Woodward, C.L.1    Prakobwanakit, S.2    Mosessian, S.3    Chow, S.A.4
  • 26
    • 73849091932 scopus 로고    scopus 로고
    • Analysis of the viral elements required in the nuclear import of HIV-1 DNA
    • doi:10.1128/JVI.01952-09
    • Rivière L, Darlix J-L, Cimarelli A, (2010) Analysis of the viral elements required in the nuclear import of HIV-1 DNA. J Virol 84: 729-739 doi:10.1128/JVI.01952-09.
    • (2010) J Virol , vol.84 , pp. 729-739
    • Rivière, L.1    Darlix, J.-L.2    Cimarelli, A.3
  • 27
    • 28644443483 scopus 로고    scopus 로고
    • A role for LEDGF/p75 in targeting HIV DNA integration
    • doi:10.1038/nm1329
    • Ciuffi A, Llano M, Poeschla E, Hoffmann C, Leipzig J, et al. (2005) A role for LEDGF/p75 in targeting HIV DNA integration. Nat Med 11: 1287-1289 doi:10.1038/nm1329.
    • (2005) Nat Med , vol.11 , pp. 1287-1289
    • Ciuffi, A.1    Llano, M.2    Poeschla, E.3    Hoffmann, C.4    Leipzig, J.5
  • 28
    • 28444445583 scopus 로고    scopus 로고
    • Structural basis for the recognition between HIV-1 integrase and transcriptional coactivator p75
    • doi:10.1073/pnas.0506924102
    • Cherepanov P, Ambrosio ALB, Rahman S, Ellenberger T, Engelman A, (2005) Structural basis for the recognition between HIV-1 integrase and transcriptional coactivator p75. Proc Natl Acad Sci U S A 102: 17308-17313 doi:10.1073/pnas.0506924102.
    • (2005) Proc Natl Acad Sci U S A , vol.102 , pp. 17308-17313
    • Cherepanov, P.1    Ambrosio, A.L.B.2    Rahman, S.3    Ellenberger, T.4    Engelman, A.5
  • 29
    • 33846049539 scopus 로고    scopus 로고
    • Identification of the LEDGF/p75 binding site in HIV-1 integrase
    • doi:10.1016/j.jmb.2006.10.094
    • Busschots K, Voet A, De Maeyer M, Rain J-C, Emiliani S, et al. (2007) Identification of the LEDGF/p75 binding site in HIV-1 integrase. J Mol Biol 365: 1480-1492 doi:10.1016/j.jmb.2006.10.094.
    • (2007) J Mol Biol , vol.365 , pp. 1480-1492
    • Busschots, K.1    Voet, A.2    De Maeyer, M.3    Rain, J.-C.4    Emiliani, S.5
  • 30
    • 77951746962 scopus 로고    scopus 로고
    • Characterization of the HIV-1 integrase chromatin- and LEDGF/p75-binding abilities by mutagenic analysis within the catalytic core domain of integrase
    • doi:10.1186/1743-422X-7-68
    • Zheng Y, Ao Z, Jayappa KD, Yao X, (2010) Characterization of the HIV-1 integrase chromatin- and LEDGF/p75-binding abilities by mutagenic analysis within the catalytic core domain of integrase. Virol J 7: 68 doi:10.1186/1743-422X-7-68.
    • (2010) Virol J , vol.7 , pp. 68
    • Zheng, Y.1    Ao, Z.2    Jayappa, K.D.3    Yao, X.4
  • 31
    • 65549142692 scopus 로고    scopus 로고
    • Identifying and characterizing a functional HIV-1 reverse transcriptase-binding site on integrase
    • doi:10.1074/jbc.M806241200
    • Wilkinson TA, Januszyk K, Phillips ML, Tekeste SS, Zhang M, et al. (2009) Identifying and characterizing a functional HIV-1 reverse transcriptase-binding site on integrase. J Biol Chem 284: 7931-7939 doi:10.1074/jbc.M806241200.
    • (2009) J Biol Chem , vol.284 , pp. 7931-7939
    • Wilkinson, T.A.1    Januszyk, K.2    Phillips, M.L.3    Tekeste, S.S.4    Zhang, M.5
  • 32
    • 77949449851 scopus 로고    scopus 로고
    • GCN5-dependent acetylation of HIV-1 integrase enhances viral integration
    • doi:10.1186/1742-4690-7-18
    • Terreni M, Valentini P, Liverani V, Gutierrez MI, Di Primio C, et al. (2010) GCN5-dependent acetylation of HIV-1 integrase enhances viral integration. Retrovirology 7: 18 doi:10.1186/1742-4690-7-18.
    • (2010) Retrovirology , vol.7 , pp. 18
    • Terreni, M.1    Valentini, P.2    Liverani, V.3    Gutierrez, M.I.4    Di Primio, C.5
  • 33
    • 58349111875 scopus 로고    scopus 로고
    • AmiGO: online access to ontology and annotation data
    • doi:10.1093/bioinformatics/btn615
    • Carbon S, Ireland A, Mungall CJ, Shu S, Marshall B, et al. (2009) AmiGO: online access to ontology and annotation data. Bioinformatics 25: 288-289 doi:10.1093/bioinformatics/btn615.
    • (2009) Bioinformatics , vol.25 , pp. 288-289
    • Carbon, S.1    Ireland, A.2    Mungall, C.J.3    Shu, S.4    Marshall, B.5
  • 34
    • 51849150399 scopus 로고    scopus 로고
    • Chromatin tethering of incoming foamy virus by the structural Gag protein
    • doi:10.1111/j.1600-0854.2008.00792.x
    • Tobaly-Tapiero J, Bittoun P, Lehmann-Che J, Delelis O, Giron M-L, et al. (2008) Chromatin tethering of incoming foamy virus by the structural Gag protein. Traffic 9: 1717-1727 doi:10.1111/j.1600-0854.2008.00792.x.
    • (2008) Traffic , vol.9 , pp. 1717-1727
    • Tobaly-Tapiero, J.1    Bittoun, P.2    Lehmann-Che, J.3    Delelis, O.4    Giron, M.-L.5
  • 35
    • 70049090961 scopus 로고    scopus 로고
    • LEDGF/p75 proteins with alternative chromatin tethers are functional HIV-1 cofactors
    • doi:10.1371/journal.ppat.1000522
    • Meehan AM, Saenz DT, Morrison JH, Garcia-Rivera JA, Peretz M, et al. (2009) LEDGF/p75 proteins with alternative chromatin tethers are functional HIV-1 cofactors. PLoS Pathog 5: e1000522 doi:10.1371/journal.ppat.1000522.
    • (2009) PLoS Pathog , vol.5
    • Meehan, A.M.1    Saenz, D.T.2    Morrison, J.H.3    Garcia-Rivera, J.A.4    Peretz, M.5
  • 36
    • 77949365510 scopus 로고    scopus 로고
    • Retroviral intasome assembly and inhibition of DNA strand transfer
    • doi:10.1038/nature08784
    • Hare S, Gupta SS, Valkov E, Engelman A, Cherepanov P, (2010) Retroviral intasome assembly and inhibition of DNA strand transfer. Nature 464: 232-236 doi:10.1038/nature08784.
    • (2010) Nature , vol.464 , pp. 232-236
    • Hare, S.1    Gupta, S.S.2    Valkov, E.3    Engelman, A.4    Cherepanov, P.5
  • 37
    • 54549127383 scopus 로고    scopus 로고
    • Phosphate coordination and movement of DNA in the Tn5 synaptic complex: role of the (R)YREK motif
    • doi:10.1093/nar/gkn577
    • Klenchin VA, Czyz A, Goryshin IY, Gradman R, Lovell S, et al. (2008) Phosphate coordination and movement of DNA in the Tn5 synaptic complex: role of the (R)YREK motif. Nucleic Acids Res 36: 5855-5862 doi:10.1093/nar/gkn577.
    • (2008) Nucleic Acids Res , vol.36 , pp. 5855-5862
    • Klenchin, V.A.1    Czyz, A.2    Goryshin, I.Y.3    Gradman, R.4    Lovell, S.5
  • 38
    • 33846272678 scopus 로고    scopus 로고
    • Single-particle image reconstruction of a tetramer of HIV integrase bound to DNA
    • doi:10.1016/j.jmb.2006.11.029
    • Ren G, Gao K, Bushman FD, Yeager M, (2007) Single-particle image reconstruction of a tetramer of HIV integrase bound to DNA. J Mol Biol 366: 286-294 doi:10.1016/j.jmb.2006.11.029.
    • (2007) J Mol Biol , vol.366 , pp. 286-294
    • Ren, G.1    Gao, K.2    Bushman, F.D.3    Yeager, M.4
  • 39
    • 0030947406 scopus 로고    scopus 로고
    • The Nef protein of human immunodeficiency virus type 1 enhances serine phosphorylation of the viral matrix
    • Swingler S, Gallay P, Camaur D, Song J, Abo A, et al. (1997) The Nef protein of human immunodeficiency virus type 1 enhances serine phosphorylation of the viral matrix. J Virol 71: 4372-4377.
    • (1997) J Virol , vol.71 , pp. 4372-4377
    • Swingler, S.1    Gallay, P.2    Camaur, D.3    Song, J.4    Abo, A.5
  • 40
    • 0035677840 scopus 로고    scopus 로고
    • HIV-1 Rev transactivator: a beta-subunit directed substrate and effector of protein kinase CK2
    • Meggio F, Marin O, Boschetti M, Sarno S, Pinna LA, (2001) HIV-1 Rev transactivator: a beta-subunit directed substrate and effector of protein kinase CK2. Mol Cell Biochem 227: 145-151.
    • (2001) Mol Cell Biochem , vol.227 , pp. 145-151
    • Meggio, F.1    Marin, O.2    Boschetti, M.3    Sarno, S.4    Pinna, L.A.5
  • 41
    • 67949109561 scopus 로고    scopus 로고
    • Prediction of HIV-1 virus-host protein interactions using virus and host sequence motifs
    • doi:10.1186/1755-8794-2-27
    • Evans P, Dampier W, Ungar L, Tozeren A, (2009) Prediction of HIV-1 virus-host protein interactions using virus and host sequence motifs. BMC Med Genomics 2: 27 doi:10.1186/1755-8794-2-27.
    • (2009) BMC Med Genomics , vol.2 , pp. 27
    • Evans, P.1    Dampier, W.2    Ungar, L.3    Tozeren, A.4
  • 42
    • 77952538851 scopus 로고    scopus 로고
    • Sequence alignment reveals possible MAPK docking motifs on HIV proteins
    • doi:10.1371/journal.pone.0008942
    • Evans P, Sacan A, Ungar L, Tozeren A, (2010) Sequence alignment reveals possible MAPK docking motifs on HIV proteins. PLoS ONE 5: e8942 doi:10.1371/journal.pone.0008942.
    • (2010) PLoS ONE , vol.5
    • Evans, P.1    Sacan, A.2    Ungar, L.3    Tozeren, A.4
  • 43
    • 69049085680 scopus 로고    scopus 로고
    • Host sequence motifs shared by HIV predict response to antiretroviral therapy
    • doi:10.1186/1755-8794-2-47
    • Dampier W, Evans P, Ungar L, Tozeren A, (2009) Host sequence motifs shared by HIV predict response to antiretroviral therapy. BMC Med Genomics 2: 47 doi:10.1186/1755-8794-2-47.
    • (2009) BMC Med Genomics , vol.2 , pp. 47
    • Dampier, W.1    Evans, P.2    Ungar, L.3    Tozeren, A.4
  • 44
    • 70450273192 scopus 로고    scopus 로고
    • Biochemical and virological analysis of the 18-residue C-terminal tail of HIV-1 integrase
    • doi:10.1186/1742-4690-6-94
    • Dar MJ, Monel B, Krishnan L, Shun M-C, Di Nunzio F, et al. (2009) Biochemical and virological analysis of the 18-residue C-terminal tail of HIV-1 integrase. Retrovirology 6: 94 doi:10.1186/1742-4690-6-94.
    • (2009) Retrovirology , vol.6 , pp. 94
    • Dar, M.J.1    Monel, B.2    Krishnan, L.3    Shun, M.-C.4    Di Nunzio, F.5
  • 45
    • 27144463461 scopus 로고    scopus 로고
    • Acetylation of HIV-1 integrase by p300 regulates viral integration
    • doi:10.1038/sj.emboj.7600770
    • Cereseto A, Manganaro L, Gutierrez MI, Terreni M, Fittipaldi A, et al. (2005) Acetylation of HIV-1 integrase by p300 regulates viral integration. EMBO J 24: 3070-3081 doi:10.1038/sj.emboj.7600770.
    • (2005) EMBO J , vol.24 , pp. 3070-3081
    • Cereseto, A.1    Manganaro, L.2    Gutierrez, M.I.3    Terreni, M.4    Fittipaldi, A.5
  • 46
    • 33847657288 scopus 로고    scopus 로고
    • Posttranslational acetylation of the human immunodeficiency virus type 1 integrase carboxyl-terminal domain is dispensable for viral replication
    • doi:10.1128/JVI.02257-06
    • Topper M, Luo Y, Zhadina M, Mohammed K, Smith L, et al. (2007) Posttranslational acetylation of the human immunodeficiency virus type 1 integrase carboxyl-terminal domain is dispensable for viral replication. J Virol 81: 3012-3017 doi:10.1128/JVI.02257-06.
    • (2007) J Virol , vol.81 , pp. 3012-3017
    • Topper, M.1    Luo, Y.2    Zhadina, M.3    Mohammed, K.4    Smith, L.5
  • 47
    • 0027968068 scopus 로고
    • CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson JD, Higgins DG, Gibson TJ, (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22: 4673-4680.
    • (1994) Nucleic Acids Res , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 48
    • 29344439400 scopus 로고    scopus 로고
    • Structural interpretation of mutations and SNPs using STRAP-NT
    • doi:10.1110/ps.051882006
    • Gille C, (2006) Structural interpretation of mutations and SNPs using STRAP-NT. Protein Sci 15: 208-210 doi:10.1110/ps.051882006.
    • (2006) Protein Sci , vol.15 , pp. 208-210
    • Gille, C.1
  • 49
    • 33646358251 scopus 로고    scopus 로고
    • Minimotif Miner: a tool for investigating protein function
    • Balla S, Thapar V, Verma S, Luong T, Faghri T, et al. (2006) Minimotif Miner: a tool for investigating protein function. Nature Methods 3: 175-177.
    • (2006) Nature Methods , vol.3 , pp. 175-177
    • Balla, S.1    Thapar, V.2    Verma, S.3    Luong, T.4    Faghri, T.5
  • 50
    • 58149202173 scopus 로고    scopus 로고
    • Minimotif miner 2nd release: a database and web system for motif search
    • Rajasekaran S, Balla S, Gradie P, Gryk MR, Kadaveru K, et al. (2009) Minimotif miner 2nd release: a database and web system for motif search. Nucleic Acids Res 37: D185-D190.
    • (2009) Nucleic Acids Res , vol.37 , pp. 185-190
    • Rajasekaran, S.1    Balla, S.2    Gradie, P.3    Gryk, M.R.4    Kadaveru, K.5
  • 51
    • 76749168997 scopus 로고    scopus 로고
    • Estimation and efficient computation of the true probability of recurrence of short linear protein sequence motifs in unrelated proteins
    • doi:10.1186/1471-2105-11-14
    • Davey NE, Edwards RJ, Shields DC, (2010) Estimation and efficient computation of the true probability of recurrence of short linear protein sequence motifs in unrelated proteins. BMC Bioinformatics 11: 14 doi:10.1186/1471-2105-11-14.
    • (2010) BMC Bioinformatics , vol.11 , pp. 14
    • Davey, N.E.1    Edwards, R.J.2    Shields, D.C.3
  • 52
    • 70350689748 scopus 로고    scopus 로고
    • VENN, a tool for titrating sequence conservation onto protein structures
    • doi:10.1093/nar/gkp616
    • Vyas J, Gryk MR, Schiller MR, (2009) VENN, a tool for titrating sequence conservation onto protein structures. Nucleic Acids Res 37: e124 doi:10.1093/nar/gkp616.
    • (2009) Nucleic Acids Res , vol.37
    • Vyas, J.1    Gryk, M.R.2    Schiller, M.R.3
  • 53
    • 23144448512 scopus 로고    scopus 로고
    • ConSurf 2005: the projection of evolutionary conservation scores of residues on protein structures
    • Landau M, Mayrose I, Rosenberg Y, Glaser F, Martz E, et al. (2005) ConSurf 2005: the projection of evolutionary conservation scores of residues on protein structures. Nucleic Acids Res 33: W299-W302.
    • (2005) Nucleic Acids Res , vol.33 , pp. 299-302
    • Landau, M.1    Mayrose, I.2    Rosenberg, Y.3    Glaser, F.4    Martz, E.5
  • 54
    • 33747840720 scopus 로고    scopus 로고
    • ET viewer: an application for predicting and visualizing functional sites in protein structures
    • Morgan DH, Kristensen DM, Mittelman D, Lichtarge O, (2006) ET viewer: an application for predicting and visualizing functional sites in protein structures. Bioinformatics 22: 2049-2050.
    • (2006) Bioinformatics , vol.22 , pp. 2049-2050
    • Morgan, D.H.1    Kristensen, D.M.2    Mittelman, D.3    Lichtarge, O.4
  • 55
    • 0014898108 scopus 로고
    • Abbreviations and symbols for nucleic acids, polynucleotides and their constituents. Recommendations 1970
    • IUPAC-IUB Commission on Biochemical Nomenclature (CBN)
    • IUPAC-IUB Commission on Biochemical Nomenclature (CBN) Abbreviations and symbols for nucleic acids, polynucleotides and their constituents. Recommendations 1970 (1970) Biochem J 120: 449-454.
    • (1970) Biochem J , vol.120 , pp. 449-454
  • 57
    • 52949130695 scopus 로고    scopus 로고
    • Global analysis of host-pathogen interactions that regulate early-stage HIV-1 replication
    • doi:10.1016/j.cell.2008.07.032
    • König R, Zhou Y, Elleder D, Diamond TL, Bonamy GMC, et al. (2008) Global analysis of host-pathogen interactions that regulate early-stage HIV-1 replication. Cell 135: 49-60 doi:10.1016/j.cell.2008.07.032.
    • (2008) Cell , vol.135 , pp. 49-60
    • König, R.1    Zhou, Y.2    Elleder, D.3    Diamond, T.L.4    Bonamy, G.M.C.5
  • 58
    • 39349097864 scopus 로고    scopus 로고
    • Identification of host proteins required for HIV infection through a functional genomic screen
    • doi:10.1126/science.1152725
    • Brass AL, Dykxhoorn DM, Benita Y, Yan N, Engelman A, et al. (2008) Identification of host proteins required for HIV infection through a functional genomic screen. Science 319: 921-926 doi:10.1126/science.1152725.
    • (2008) Science , vol.319 , pp. 921-926
    • Brass, A.L.1    Dykxhoorn, D.M.2    Benita, Y.3    Yan, N.4    Engelman, A.5
  • 59
    • 55249088255 scopus 로고    scopus 로고
    • Genome-scale RNAi screen for host factors required for HIV replication
    • doi:10.1016/j.chom.2008.10.004
    • Zhou H, Xu M, Huang Q, Gates AT, Zhang XD, et al. (2008) Genome-scale RNAi screen for host factors required for HIV replication. Cell Host Microbe 4: 495-504 doi:10.1016/j.chom.2008.10.004.
    • (2008) Cell Host Microbe , vol.4 , pp. 495-504
    • Zhou, H.1    Xu, M.2    Huang, Q.3    Gates, A.T.4    Zhang, X.D.5
  • 60
    • 67749148923 scopus 로고    scopus 로고
    • A genome-wide short hairpin RNA screening of jurkat T-cells for human proteins contributing to productive HIV-1 replication
    • doi:10.1074/jbc.M109.010033
    • Yeung ML, Houzet L, Yedavalli VSRK, Jeang K-T, (2009) A genome-wide short hairpin RNA screening of jurkat T-cells for human proteins contributing to productive HIV-1 replication. J Biol Chem 284: 19463-19473 doi:10.1074/jbc.M109.010033.
    • (2009) J Biol Chem , vol.284 , pp. 19463-19473
    • Yeung, M.L.1    Houzet, L.2    Yedavalli, V.S.R.K.3    Jeang, K.-T.4
  • 61
    • 0034069495 scopus 로고    scopus 로고
    • Gene ontology: tool for the unification of biology. The Gene Ontology Consortium
    • doi:10.1038/75556
    • Ashburner M, Ball CA, Blake JA, Botstein D, Butler H, et al. (2000) Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nat Genet 25: 25-29 doi:10.1038/75556.
    • (2000) Nat Genet , vol.25 , pp. 25-29
    • Ashburner, M.1    Ball, C.A.2    Blake, J.A.3    Botstein, D.4    Butler, H.5
  • 63
    • 0029881007 scopus 로고    scopus 로고
    • MOLMOL: a program for display and analysis of macromolecular structures
    • Koradi R, Billeter M, Wüthrich K, (1996) MOLMOL: a program for display and analysis of macromolecular structures. J Mol Graph 14: 51-55, 29-32.
    • (1996) J Mol Graph , vol.14
    • Koradi, R.1    Billeter, M.2    Wüthrich, K.3


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