-
1
-
-
0042622252
-
ELM server: A new resource for investigating short functional sites in modular eukaryotic proteins
-
10.1093/nar/gkg545, 168952, 12824381
-
Puntervoll P, Linding R, Gemund C, Chabanis-Davidson S, Mattingsdal M, Cameron S, Martin DM, Ausiello G, Brannetti B, Costantini A, et al. ELM server: A new resource for investigating short functional sites in modular eukaryotic proteins. Nucleic Acids Res 2003, 31(13):3625-3630. 10.1093/nar/gkg545, 168952, 12824381.
-
(2003)
Nucleic Acids Res
, vol.31
, Issue.13
, pp. 3625-3630
-
-
Puntervoll, P.1
Linding, R.2
Gemund, C.3
Chabanis-Davidson, S.4
Mattingsdal, M.5
Cameron, S.6
Martin, D.M.7
Ausiello, G.8
Brannetti, B.9
Costantini, A.10
-
2
-
-
49549122501
-
Understanding eukaryotic linear motifs and their role in cell signaling and regulation
-
10.2741/3175, 18508681
-
Diella F, Haslam N, Chica C, Budd A, Michael S, Brown NP, Trave G, Gibson TJ. Understanding eukaryotic linear motifs and their role in cell signaling and regulation. Front Biosci 2008, 13:6580-6603. 10.2741/3175, 18508681.
-
(2008)
Front Biosci
, vol.13
, pp. 6580-6603
-
-
Diella, F.1
Haslam, N.2
Chica, C.3
Budd, A.4
Michael, S.5
Brown, N.P.6
Trave, G.7
Gibson, T.J.8
-
3
-
-
49749117432
-
Contextual specificity in peptide-mediated protein interactions
-
10.1371/journal.pone.0002524, 2438476, 18596940
-
Stein A, Aloy P. Contextual specificity in peptide-mediated protein interactions. PLoS ONE 2008, 3(7):e2524. 10.1371/journal.pone.0002524, 2438476, 18596940.
-
(2008)
PLoS ONE
, vol.3
, Issue.7
-
-
Stein, A.1
Aloy, P.2
-
4
-
-
20444414545
-
Linear motifs: evolutionary interaction switches
-
10.1016/j.febslet.2005.04.005, 15943979
-
Neduva V, Russell RB. Linear motifs: evolutionary interaction switches. FEBS Lett 2005, 579(15):3342-3345. 10.1016/j.febslet.2005.04.005, 15943979.
-
(2005)
FEBS Lett
, vol.579
, Issue.15
, pp. 3342-3345
-
-
Neduva, V.1
Russell, R.B.2
-
5
-
-
34249695447
-
Local structural disorder imparts plasticity on linear motifs
-
10.1093/bioinformatics/btm035, 17387114
-
Fuxreiter M, Tompa P, Simon I. Local structural disorder imparts plasticity on linear motifs. Bioinformatics 2007, 23(8):950-956. 10.1093/bioinformatics/btm035, 17387114.
-
(2007)
Bioinformatics
, vol.23
, Issue.8
, pp. 950-956
-
-
Fuxreiter, M.1
Tompa, P.2
Simon, I.3
-
6
-
-
0032749078
-
Intrinsically unstructured proteins: re-assessing the protein structure-function paradigm
-
10.1006/jmbi.1999.3110, 10550212
-
Wright PE, Dyson HJ. Intrinsically unstructured proteins: re-assessing the protein structure-function paradigm. J Mol Biol 1999, 293(2):321-331. 10.1006/jmbi.1999.3110, 10550212.
-
(1999)
J Mol Biol
, vol.293
, Issue.2
, pp. 321-331
-
-
Wright, P.E.1
Dyson, H.J.2
-
7
-
-
34547743903
-
Reuse of structural domain-domain interactions in protein networks
-
10.1186/1471-2105-8-259, 1940023, 17640363
-
Schuster-Bockler B, Bateman A. Reuse of structural domain-domain interactions in protein networks. BMC Bioinformatics 2007, 8:259. 10.1186/1471-2105-8-259, 1940023, 17640363.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 259
-
-
Schuster-Bockler, B.1
Bateman, A.2
-
8
-
-
41149178980
-
A careful disorderliness in the proteome: sites for interaction and targets for future therapies
-
10.1016/j.febslet.2008.02.027, 18284921
-
Russell RB, Gibson TJ. A careful disorderliness in the proteome: sites for interaction and targets for future therapies. FEBS Lett 2008, 582(8):1271-1275. 10.1016/j.febslet.2008.02.027, 18284921.
-
(2008)
FEBS Lett
, vol.582
, Issue.8
, pp. 1271-1275
-
-
Russell, R.B.1
Gibson, T.J.2
-
9
-
-
29144455315
-
Systematic Discovery of New Recognition Peptides Mediating Protein Interaction Networks
-
10.1371/journal.pbio.0030405, 1283537,1283537, 16279839
-
Neduva V, Linding R, Su-Angrand I, Stark A, Masi FD, Gibson TJ, Lewis J, Serrano L, Russell RB. Systematic Discovery of New Recognition Peptides Mediating Protein Interaction Networks. PLoS Biol 2005, 3(12):e405. 10.1371/journal.pbio.0030405, 1283537,1283537, 16279839.
-
(2005)
PLoS Biol
, vol.3
, Issue.12
-
-
Neduva, V.1
Linding, R.2
Su-Angrand, I.3
Stark, A.4
Masi, F.D.5
Gibson, T.J.6
Lewis, J.7
Serrano, L.8
Russell, R.B.9
-
10
-
-
0346869047
-
Recent improvements to the PROSITE database
-
Database, 10.1093/nar/gkh044, 308778, 14681377
-
Hulo N, Sigrist CJ, Le Saux V, Langendijk-Genevaux PS, Bordoli L, Gattiker A, De Castro E, Bucher P, Bairoch A. Recent improvements to the PROSITE database. Nucleic Acids Res 2004, (32 Database):D134-137. 10.1093/nar/gkh044, 308778, 14681377.
-
(2004)
Nucleic Acids Res
, Issue.32
-
-
Hulo, N.1
Sigrist, C.J.2
Le Saux, V.3
Langendijk-Genevaux, P.S.4
Bordoli, L.5
Gattiker, A.6
De Castro, E.7
Bucher, P.8
Bairoch, A.9
-
11
-
-
33646358251
-
Minimotif Miner: a tool for investigating protein function
-
10.1038/nmeth856, 16489333
-
Balla S, Thapar V, Verma S, Luong T, Faghri T, Huang CH, Rajasekaran S, del Campo JJ, Shinn JH, Mohler WA, et al. Minimotif Miner: a tool for investigating protein function. Nat Methods 2006, 3(3):175-177. 10.1038/nmeth856, 16489333.
-
(2006)
Nat Methods
, vol.3
, Issue.3
, pp. 175-177
-
-
Balla, S.1
Thapar, V.2
Verma, S.3
Luong, T.4
Faghri, T.5
Huang, C.H.6
Rajasekaran, S.7
del Campo, J.J.8
Shinn, J.H.9
Mohler, W.A.10
-
12
-
-
39349090679
-
Discovery of candidate KEN-box motifs using cell cycle keyword enrichment combined with native disorder prediction and motif conservation
-
10.1093/bioinformatics/btm624, 18184688
-
Michael S, Trave G, Ramu C, Chica C, Gibson TJ. Discovery of candidate KEN-box motifs using cell cycle keyword enrichment combined with native disorder prediction and motif conservation. Bioinformatics 2008, 24(4):453-457. 10.1093/bioinformatics/btm624, 18184688.
-
(2008)
Bioinformatics
, vol.24
, Issue.4
, pp. 453-457
-
-
Michael, S.1
Trave, G.2
Ramu, C.3
Chica, C.4
Gibson, T.J.5
-
13
-
-
28844446200
-
The EH1 motif in metazoan transcription factors
-
10.1186/1471-2164-6-169, 1310626, 16309560
-
Copley RR. The EH1 motif in metazoan transcription factors. BMC Genomics 2005, 6:169. 10.1186/1471-2164-6-169, 1310626, 16309560.
-
(2005)
BMC Genomics
, vol.6
, pp. 169
-
-
Copley, R.R.1
-
14
-
-
33644877439
-
Human protein reference database--2006 update
-
Database, 10.1093/nar/gkj141, 1347503, 16381900
-
Mishra GR, Suresh M, Kumaran K, Kannabiran N, Suresh S, Bala P, Shivakumar K, Anuradha N, Reddy R, Raghavan TM, et al. Human protein reference database--2006 update. Nucleic Acids Res 2006, (34 Database):D411-414. 10.1093/nar/gkj141, 1347503, 16381900.
-
(2006)
Nucleic Acids Res
, Issue.34
-
-
Mishra, G.R.1
Suresh, M.2
Kumaran, K.3
Kannabiran, N.4
Suresh, S.5
Bala, P.6
Shivakumar, K.7
Anuradha, N.8
Reddy, R.9
Raghavan, T.M.10
-
15
-
-
38549092088
-
Phospho.ELM: a database of phosphorylation sites--update 2008
-
Database, 2238828, 17962309
-
Diella F, Gould CM, Chica C, Via A, Gibson TJ. Phospho.ELM: a database of phosphorylation sites--update 2008. Nucleic Acids Res 2008, (36 Database):D240-244. 2238828, 17962309.
-
(2008)
Nucleic Acids Res
, Issue.36
-
-
Diella, F.1
Gould, C.M.2
Chica, C.3
Via, A.4
Gibson, T.J.5
-
16
-
-
38549141104
-
LOCATE: a mammalian protein subcellular localization database
-
Database, 2238969, 17986452
-
Sprenger J, Lynn Fink J, Karunaratne S, Hanson K, Hamilton NA, Teasdale RD. LOCATE: a mammalian protein subcellular localization database. Nucleic Acids Res 2008, (36 Database):D230-233. 2238969, 17986452.
-
(2008)
Nucleic Acids Res
, Issue.36
-
-
Sprenger, J.1
Lynn Fink, J.2
Karunaratne, S.3
Hanson, K.4
Hamilton, N.A.5
Teasdale, R.D.6
-
17
-
-
33747824163
-
DILIMOT: discovery of linear motifs in proteins
-
Web Server, 10.1093/nar/gkl159, 1538856, 16845024
-
Neduva V, Russell RB. DILIMOT: discovery of linear motifs in proteins. Nucleic Acids Res 2006, (34 Web Server):W350-355. 10.1093/nar/gkl159, 1538856, 16845024.
-
(2006)
Nucleic Acids Res
, Issue.34
-
-
Neduva, V.1
Russell, R.B.2
-
18
-
-
33750324327
-
Absolute net charge and the biological activity of oligopeptides
-
10.1021/ci0600760, 16995748
-
Parthasarathi L, Devocelle M, Sondergaard C, Baran I, O'Dushlaine CT, Davey NE, Edwards RJ, Moran N, Kenny D, Shields DC. Absolute net charge and the biological activity of oligopeptides. J Chem Inf Model 2006, 46(5):2183-2190. 10.1021/ci0600760, 16995748.
-
(2006)
J Chem Inf Model
, vol.46
, Issue.5
, pp. 2183-2190
-
-
Parthasarathi, L.1
Devocelle, M.2
Sondergaard, C.3
Baran, I.4
O'Dushlaine, C.T.5
Davey, N.E.6
Edwards, R.J.7
Moran, N.8
Kenny, D.9
Shields, D.C.10
-
19
-
-
0028270992
-
Detecting patterns in protein sequences
-
10.1006/jmbi.1994.1407, 8014990
-
Neuwald AF, Green P. Detecting patterns in protein sequences. J Mol Biol 1994, 239(5):698-712. 10.1006/jmbi.1994.1407, 8014990.
-
(1994)
J Mol Biol
, vol.239
, Issue.5
, pp. 698-712
-
-
Neuwald, A.F.1
Green, P.2
-
20
-
-
0029159799
-
Finding flexible patterns in unaligned protein sequences
-
10.1002/pro.5560040817, 2143188, 8520485
-
Jonassen I, Collins JF, Higgins DG. Finding flexible patterns in unaligned protein sequences. Protein Sci 1995, 4(8):1587-1595. 10.1002/pro.5560040817, 2143188, 8520485.
-
(1995)
Protein Sci
, vol.4
, Issue.8
, pp. 1587-1595
-
-
Jonassen, I.1
Collins, J.F.2
Higgins, D.G.3
-
21
-
-
41149120313
-
SLiMFinder: A Probabilistic Method for Identifying Over-Represented, Convergently Evolved, Short Linear Motifs in Proteins
-
10.1371/journal.pone.0000967, 1989135, 17912346
-
Edwards RJ, Davey NE, Shields DC. SLiMFinder: A Probabilistic Method for Identifying Over-Represented, Convergently Evolved, Short Linear Motifs in Proteins. PLoS ONE 2007, 2(10):e967. 10.1371/journal.pone.0000967, 1989135, 17912346.
-
(2007)
PLoS ONE
, vol.2
, Issue.10
-
-
Edwards, R.J.1
Davey, N.E.2
Shields, D.C.3
-
22
-
-
13444273448
-
The Universal Protein Resource (UniProt)
-
Database, 540024, 15608167
-
Bairoch A, Apweiler R, Wu CH, Barker WC, Boeckmann B, Ferro S, Gasteiger E, Huang H, Lopez R, Magrane M, et al. The Universal Protein Resource (UniProt). Nucleic Acids Res 2005, (33 Database):D154-159. 540024, 15608167.
-
(2005)
Nucleic Acids Res
, Issue.33
-
-
Bairoch, A.1
Apweiler, R.2
Wu, C.H.3
Barker, W.C.4
Boeckmann, B.5
Ferro, S.6
Gasteiger, E.7
Huang, H.8
Lopez, R.9
Magrane, M.10
-
23
-
-
0042424602
-
Statistical significance for genomewide studies
-
10.1073/pnas.1530509100, 170937, 12883005
-
Storey JD, Tibshirani R. Statistical significance for genomewide studies. Proc Natl Acad Sci USA 2003, 100(16):9440-9445. 10.1073/pnas.1530509100, 170937, 12883005.
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, Issue.16
, pp. 9440-9445
-
-
Storey, J.D.1
Tibshirani, R.2
-
24
-
-
24044538903
-
IUPred: web server for the prediction of intrinsically unstructured regions of proteins based on estimated energy content
-
10.1093/bioinformatics/bti541, 15955779
-
Dosztányi Z, Csizmok V, Tompa P, Simon I. IUPred: web server for the prediction of intrinsically unstructured regions of proteins based on estimated energy content. Bioinformatics 2005, 21(16):3433-3434. 10.1093/bioinformatics/bti541, 15955779.
-
(2005)
Bioinformatics
, vol.21
, Issue.16
, pp. 3433-3434
-
-
Dosztányi, Z.1
Csizmok, V.2
Tompa, P.3
Simon, I.4
-
25
-
-
34848901090
-
Characterization of protein hubs by inferring interacting motifs from protein interactions
-
10.1371/journal.pcbi.0030178, 1976338,1976338, 17941705
-
Aragues R, Sali A, Bonet J, Marti-Renom MA, Oliva B. Characterization of protein hubs by inferring interacting motifs from protein interactions. PLoS Comput Biol 2007, 3(9):1761-1771. 10.1371/journal.pcbi.0030178, 1976338,1976338, 17941705.
-
(2007)
PLoS Comput Biol
, vol.3
, Issue.9
, pp. 1761-1771
-
-
Aragues, R.1
Sali, A.2
Bonet, J.3
Marti-Renom, M.A.4
Oliva, B.5
-
26
-
-
60149099647
-
Masking residues using context-specific evolutionary conservation significantly improves short linear motif discovery
-
10.1093/bioinformatics/btn664, 19136552
-
Davey NE, Shields DC, Edwards RJ. Masking residues using context-specific evolutionary conservation significantly improves short linear motif discovery. Bioinformatics 2009, 25(4):443-4. 10.1093/bioinformatics/btn664, 19136552.
-
(2009)
Bioinformatics
, vol.25
, Issue.4
, pp. 443-444
-
-
Davey, N.E.1
Shields, D.C.2
Edwards, R.J.3
|