Molecular characterization of a new species in the genus Alphacoronavirus associated with mink epizootic catarrhal gastroenteritis

Journal of General Virology

Volumn 92, Issue 6, 2011, Pages 1369-1379

  Vlasova, Anastasia N ^a   Halpin, Rebecca ^b   Wang, Shiliang ^b   Ghedin, Elodie ^b,c   Spiro, David J ^b   Saif, Linda J ^a  

^a OHIO STATE UNIVERSITY   (United States)

^b J CRAIG VENTER INSTITUTE   (United States)

^c UNIVERSITY OF PITTSBURGH SCHOOL OF MEDICINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

VIRUS RNA;

ALPHACORONAVIRUS; ARTICLE; CORONAVIRUS; EPIZOOTIC CATARRHAL GASTROENTERITIS; FECES; MINK; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SPECIES IDENTIFICATION; UNITED STATES; VIRAL GASTROENTERITIS; VIRUS GENOME; VIRUS ISOLATION;

ANIMALS; BASE SEQUENCE; CORONAVIRUS; FECES; GASTROENTERITIS; GENOME, VIRAL; MINK; MOLECULAR SEQUENCE DATA; PHYLOGENY; VIRAL PROTEINS;

CORONAVIRUS; ENTERIC CORONAVIRUS; MUSTELA; MUSTELA VISON;

EID: 79956296351     PISSN: 00221317     EISSN: 14652099     Source Type: Journal    
DOI: 10.1099/vir.0.025353-0     Document Type: Article

References (66)

1. Alekseev, K. P., Vlasova, A. N., Jung, K., Hasoksuz, M., Zhang, X., Halpin, R., Wang, S., Ghedin, E., Spiro, D. & Saif, L. J. (2008). Bovinelike coronaviruses isolated from four species of captive wild ruminants are homologous to bovine coronaviruses, based on complete genomic sequences. J Virol 82, 12422-12431.
2. Allander, T., Tammi, M. T., Eriksson, M., Bjerkner, A., Tiveljung- Lindell, A. & Andersson, B. (2005). Cloning of a human parvovirus by molecular screening of respiratory tract samples. Proc Natl Acad Sci U S A 102, 12891-12896.
3. Brierley, I., Boursnell, M. E., Binns, M. M., Bilimoria, B., Blok, V. C., Brown, T. D. & Inglis, S. C. (1987). An efficient ribosomal frameshifting signal in the polymerase-encoding region of the coronavirus IBV. EMBO J 6, 3779-3785.
4. Budzilowicz, C. J., Wilczynski, S. P. & Weiss, S. R. (1985). Three intergenic regions of coronavirus mouse hepatitis virus strain A59 genome RNA contain a common nucleotide sequence that is homologous to the 39 end of the viral mRNA leader sequence. J Virol 53, 834-840.
5. Cavanagh, D. (1997). Nidovirales: a new order comprising Coronaviridae and Arteriviridae. Arch Virol 142, 629-633.
6. Chang, H.-W., de Groot, R. J., Egberink, H. F. & Rottier, P. J. (2010). Feline infectious peritonitis: insights into feline coronavirus pathobiogenesis and epidemiology based on genetic analysis of the viral 3c gene. J Gen Virol 91, 415-420.
7. Collisson, E. W., Williams, A. K., Vonder Haar, R., Li, W. & Sneed, L. W. (1990). Sequence comparisons of the 39 end of the genomes of five strains of avian infectious bronchitis virus. Adv Exp Med Biol 276, 373-377.
8. De Groot, R. J., Andeweg, A. C., Horzinek, M. C. & Spaan, W. J. (1988). Sequence analysis of the 39-end of the feline coronavirus FIPV 79-1146 genome: comparison with the genome of porcine coronavirus TGEV reveals large insertions. Virology 167, 370-376.
9. Djikeng, A., Halpin, R., Kuzmickas, R., Depasse, J., Feldblyum, J., Sengamalay, N., Afonso, C., Zhang, X., Anderson, N. G. & other authors (2008). Viral genome sequencing by random priming methods. BMC Genomics 9, 5.
10. Domingo, E., Baranowski, E., Ruiz-Jarabo, C. M., Martín-Hernández, A. M., Sáiz, J. C. & Escarmís, C. (1998). Quasispecies structure and persistence of RNA viruses. Emerg Infect Dis 4, 521-527.
11. Drosten, C., Preiser, W., Günther, S., Schmitz, H. & Doerr, H. W. (2003). Severe acute respiratory syndrome: identification of the etiological agent. Trends Mol Med 9, 325-327.
12. Dye, C., Temperton, N. & Siddell, S. G. (2007). Type I feline coronavirus spike glycoprotein fails to recognize aminopeptidase N as a functional receptor on feline cell lines. J Gen Virol 88, 1753-1760.
13. Evermann, J. F., Smith, A. W., Skilling, D. E. & McKeirnan, A. J. (1983). Ultrastructure of newly recognized caliciviruses of the dog and mink. Arch Virol 76, 257-261.
14. Gajer, P., Schatz, M. & Salzberg, S. L. (2004). Automated correction of genome sequence errors. Nucleic Acids Res 32, 562-569.
15. Gillim-Ross, L., Taylor, J., Scholl, D. R., Ridenour, J., Masters, P. S. & Wentworth, D. E. (2004). Discovery of novel human and animal cells infected by the severe acute respiratory syndrome coronavirus by replication-specific multiplex reverse transcription-PCR. J Clin Microbiol 42, 3196-3206.
16. González, J. M., Gomez-Puertas, P., Cavanagh, D., Gorbalenya, A. E. & Enjuanes, L. (2003). A comparative sequence analysis to revise the current taxonomy of the family Coronaviridae. Arch Virol 148, 2207-2235.
17. Gorbalenya, A. E., Enjuanes, L., Ziebuhr, J. & Snijder, E. J. (2006). Nidovirales: evolving the largest RNA virus genome. Virus Res 117, 17-37.
18. Gorham, J. R., Evermann, J. F., Ward, A., Pearson, R., Shen, D., Hartsough, G. R. & Leathers, C. (1990). Detection of coronavirus-like particles from mink with epizootic catarrhal gastroenteritis. Can J Vet Res 54, 383-384.
19. Guan, Y., Zheng, B. J., He, Y. Q., Liu, X. L., Zhuang, Z. X., Cheung, C. L., Luo, S. W., Li, P. H., Zhang, L. J. & other authors (2003). Isolation and characterization of viruses related to the SARS coronavirus from animals in southern China. Science 302, 276-278.
20. Haijema, B. J., Volders, H. & Rottier, P. J. (2004). Live, attenuated coronavirus vaccines through the directed deletion of group-specific genes provide protection against feline infectious peritonitis. J Virol 78, 3863-3871.
21. Hasoksuz, M., Alekseev, K., Vlasova, A., Zhang, X., Spiro, D., Halpin, R., Wang, S., Ghedin, E. & Saif, L. J. (2007). Biologic, antigenic, and fulllength genomic characterization of a bovine-like coronavirus isolated from a giraffe. J Virol 81, 4981-4990.
22. Have, P., Moving, V., Svansson, V., Uttenthal, A. & Bloch, B. (1992). Coronavirus infection in mink (Mustela vison). Serological evidence of infection with a coronavirus related to transmissible gastroenteritis virus and porcine epidemic diarrhea virus. Vet Microbiol 31, 1-10.
23. Heller, L. K., Gillim-Ross, L., Olivieri, E. R. & Wentworth, D. E. (2006). Mustela vison ACE2 functions as a receptor for SARS-coronavirus. Adv Exp Med Biol 581, 507-510.
24. Herrewegh, A. A., Vennema, H., Horzinek, M. C., Rottier, P. J. & de Groot, R. J. (1995). The molecular genetics of feline coronaviruses: comparative sequence analysis of the ORF7a/7b transcription unit of different biotypes. Virology 212, 622-631.
25. Horsburgh, B. C., Brierley, I. & Brown, T. D. (1992). Analysis of a 9.6 kb sequence from the 39 end of canine coronavirus genomic RNA. J Gen Virol 73, 2849-2862.
26. Izeta, A., Smerdou, C., Alonso, S., Penzes, Z., Mendez, A., Plana- Durán, J. & Enjuanes, L. (1999). Replication and packaging of transmissible gastroenteritis coronavirus-derived synthetic minigenomes. J Virol 73, 1535-1545.
27. Kan, B., Wang, M., Jing, H., Xu, H., Jiang, X., Yan, M., Liang, W., Zheng, H., Wan, K. & other authors (2005). Molecular evolution analysis and geographic investigation of severe acute respiratory syndrome coronavirus- like virus in palm civets at an animal market and on farms. J Virol 79, 11892-11900.
28. Kennedy, M., Boedeker, N., Gibbs, P. & Kania, S. (2001). Deletions in the 7a ORF of feline coronavirus associated with an epidemic of feline infectious peritonitis. Vet Microbiol 81, 227-234.
29. Ksiazek, T. G., Erdman, D., Goldsmith, C. S., Zaki, S. R., Peret, T., Emery, S., Tong, S., Urbani, C., Comer, J. A. & other authors (2003). A novel coronavirus associated with severe acute respiratory syndrome. N Engl J Med 348, 1953-1966.
30. Lai, M. M. & Cavanagh, D. (1997). The molecular biology of coronaviruses. Adv Virus Res 48, 1-100.
31. Larsen, A. E. & Gorham, J. R. (1975). A new mink enteritis: an initial report. Vet Med Small Anim Clin 70, 291-292.
32. Lau, S. K., Woo, P. C., Li, K. S., Huang, Y., Tsoi, H.-W., Wong, B. H., Wong, S. S., Leung, S.-Y., Chan, K.-H. & Yuen, K.-Y. (2005). Severe acute respiratory syndrome coronavirus-like virus in Chinese horseshoe bats. Proc Natl Acad Sci U S A 102, 14040-14045.
33. Li, W., Shi, Z., Yu, M., Ren, W., Smith, C., Epstein, J. H., Wang, H., Crameri, G., Hu, Z. & other authors (2005). Bats are natural reservoirs of SARS-like coronaviruses. Science 310, 676-679.
34. Liu, D. X. & Inglis, S. C. (1992). Identification of two new polypeptides encoded by mRNA5 of the coronavirus infectious bronchitis virus. Virology 186, 342-347.
35. Liu, D. X., Cavanagh, D., Green, P. & Inglis, S. C. (1991). A polycistronic mRNA specified by the coronavirus infectious bronchitis virus. Virology 184, 531-544.
36. Macartney, L., Parrish, C. R., Binn, L. N. & Carmichael, L. E. (1988). Characterization of minute virus of canines (MVC) and its pathogenicity for pups. Cornell Vet 78, 131-145.
37. Martina, B. E., Haagmans, B. L., Kuiken, T., Fouchier, R. A., Rimmelzwaan, G. F., Van Amerongen, G., Peiris, J. S., Lim, W. & Osterhaus, A. D. (2003). Virology: SARS virus infection of cats and ferrets. Nature 425, 915.
38. Mossel, E. C., Huang, C., Narayanan, K., Makino, S., Tesh, R. B. & Peters, C. J. (2005). Exogenous ACE2 expression allows refractory cell lines to support severe acute respiratory syndrome coronavirus replication. J Virol 79, 3846-3850.
39. Oostra, M., de Haan, C. A., de Groot, R. J. & Rottier, P. J. (2006). Glycosylation of the severe acute respiratory syndrome coronavirus triple-spanning membrane proteins 3a and M. J Virol 80, 2326-2336.
40. Park, S.-J., Moon, H.-J., Luo, Y., Kim, H.-K., Kim, E.-M., Yang, J.-S., Song, D.-S., Kang, B.-K., Lee, C.-S. & Park, B.-K. (2008). Cloning and further sequence analysis of the ORF3 gene of wild- and attenuatedtype porcine epidemic diarrhea viruses. Virus Genes 36, 95-104.
41. Parrish, C. R., Have, P., Foreyt, W. J., Evermann, J. F., Senda, M. & Carmichael, L. E. (1988). The global spread and replacement of canine parvovirus strains. J Gen Virol 69, 1111-1116.
42. Pasternak, A. O., van den Born, E., Spaan, W. J. & Snijder, E. J. (2001). Sequence requirements for RNA strand transfer during nidovirus discontinuous subgenomic RNA synthesis. EMBO J 20, 7220-7228.
43. Pedersen, N. C. (2009). A review of feline infectious peritonitis virus infection: 1963-2008. J Feline Med Surg 11, 225-258.
44. Peiris, J. S., Guan, Y. & Yuen, K. Y. (2004). Severe acute respiratory syndrome. Nat Med 10 (Suppl), S88-S97.
45. Penzes, Z., Gonzalez, J. M., Calvo, E., Izeta, A., Smerdou, C., Méndez, A., Sanchez, C. M., Sola, I., Almazan, F. & Enjuanes, L. (2001). Complete genome sequence of transmissible gastroenteritis coronavirus PUR46-MAD clone and evolution of the Purdue virus cluster. Virus Genes 23, 105-118.
46. Pop, M., Phillippy, A., Delcher, A. L. & Salzberg, S. L. (2004). Comparative genome assembly. Brief Bioinform 5, 237-248.
47. Pratelli, A., Martella, V., Decaro, N., Tinelli, A., Camero, M., Cirone, F., Elia, G., Cavalli, A., Corrente, M. & other authors (2003). Genetic diversity of a canine coronavirus detected in pups with diarrhoea in Italy. J Virol Methods 110, 9-17.
48. Rottier, P. J., Nakamura, K., Schellen, P., Volders, H. & Haijema, B. J. (2005). Acquisition of macrophage tropism during the pathogenesis of feline infectious peritonitis is determined by mutations in the feline coronavirus spike protein. J Virol 79, 14122-14130.
49. Saif, L. J., Brock, K. V., Redman, D. R. & Kohler, E. M. (1991). Winter dysentery in dairy herds: electron microscopic and serological evidence for an association with coronavirus infection. Vet Rec 128, 447-449.
50. Sawicki, S. G. & Sawicki, D. L. (1998). A new model for coronavirus transcription. Adv Exp Med Biol 440, 215-219.
51. Snijder, E. J., Bredenbeek, P. J., Dobbe, J. C., Thiel, V., Ziebuhr, J., Poon, L. L., Guan, Y., Rozanov, M., Spaan, W. J. & Gorbalenya, A. E. (2003). Unique and conserved features of genome and proteome of SARS-coronavirus, an early split-off from the coronavirus group 2 lineage. J Mol Biol 331, 991-1004.
52. Song, H.-D., Tu, C.-C., Zhang, G.-W., Wang, S.-Y., Zheng, K., Lei, L.-C., Chen, Q.-X., Gao, Y. -W., Zhou, H.-Q. & other authors (2005). Cross-host evolution of severe acute respiratory syndrome coronavirus in palm civet and human. Proc Natl Acad Sci U S A 102, 2430-2435.
53. Spaan, W., Cavanagh, D. & Horzinek, M. C. (1988). Coronaviruses: structure and genome expression. J Gen Virol 69, 2939-2952.
54. Tung, F. Y., Abraham, S., Sethna, M., Hung, S. L., Sethna, P., Hogue, B. G. & Brian, D. A. (1992). The 9-kDa hydrophobic protein encoded at the 39 end of the porcine transmissible gastroenteritis coronavirus genome is membrane-associated. Virology 186, 676-683.
55. Tyrrell, D. A., Almeida, J. D., Cunningham, C. H., Dowdle, W. R., Hofstad, M. S., McIntosh, K., Tajima, M., Zakstelskaya, L. Y., Easterday, B. C. & other authors (1975). Coronaviridae. Intervirology 5, 76-82.
56. Vennema, H., Heijnen, L., Rottier, P. J., Horzinek, M. C. & Spaan, W. J. (1992a). A novel glycoprotein of feline infectious peritonitis coronavirus contains a KDEL-like endoplasmic reticulum retention signal. J Virol 66, 4951-4956.
57. Vennema, H., Rossen, J. W., Wesseling, J., Horzinek, M. C. & Rottier, P. J. (1992b). Genomic organization and expression of the 39 end of the canine and feline enteric coronaviruses. Virology 191, 134-140.
58. Vennema, H., Poland, A., Foley, J. & Pedersen, N. C. (1998). Feline infectious peritonitis viruses arise by mutation from endemic feline enteric coronaviruses. Virology 243, 150-157.
59. Wang, M., Yan, M., Xu, H., Liang, W., Kan, B., Zheng, B., Chen, H., Zheng, H., Xu, Y. & other authors (2005). SARS-CoV infection in a restaurant from palm civet. Emerg Infect Dis 11, 1860-1865.
60. Wang, S., Sundaram, J. P. & Spiro, D. (2010). VIGOR, an annotation program for small viral genomes. BMC Bioinformatics 11, 451.
61. Wise, A. G., Kiupel, M. & Maes, R. K. (2006). Molecular characterization of a novel coronavirus associated with epizootic catarrhal enteritis (ECE) in ferrets. Virology 349, 164-174.
62. Wise, A. G., Kiupel, M., Garner, M. M., Clark, A. K. & Maes, R. K. (2010). Comparative sequence analysis of the distal one-third of the genomes of a systemic and an enteric ferret coronavirus. Virus Res 149, 42-50.
63. Woods, R. D. (2001). Efficacy of a transmissible gastroenteritis coronavirus with an altered ORF-3 gene. Can J Vet Res 65, 28-32.
64. Wu, D., Tu, C., Xin, C., Xuan, H., Meng, Q., Liu, Y., Yu, Y., Guan, Y., Jiang, Y. & other authors (2005). Civets are equally susceptible to experimental infection by two different severe acute respiratory syndrome coronavirus isolates. J Virol 79, 2620-2625.
65. Zhang, X., Hasoksuz, M., Spiro, D., Halpin, R., Wang, S., Stollar, S., Janies, D., Hadya, N., Tang, Y. & other authors (2007). Complete genomic sequences, a key residue in the spike protein and deletions in nonstructural protein 3b of US strains of the virulent and attenuated coronaviruses, transmissible gastroenteritis virus and porcine respiratory coronavirus. Virology 358, 424-435.
66. Ziebuhr, J. (2005). The coronavirus replicase. Curr Top Microbiol Immunol 287, 57-94.