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Volumn 33, Issue 6, 2011, Pages 403-413

Characterization of stem cells and cancer cells on the basis of gene expression profile stability, plasticity, and robustness: Dynamical systems theory of gene expressions under cell-cell interaction explains mutational robustness of differentiated cells and suggests how cancer cells emerge

Author keywords

Attractor; Cell cell interaction; Evolution; Robustness; Stem cell

Indexed keywords

ARTICLE; CANCER CELL; CELL DIFFERENTIATION; CELL INTERACTION; GENE CONTROL; GENE EXPRESSION PROFILING; GENE MUTATION; HUMAN; NONHUMAN; STEM CELL;

EID: 79956132200     PISSN: 02659247     EISSN: 15211878     Source Type: Journal    
DOI: 10.1002/bies.201000153     Document Type: Article
Times cited : (41)

References (71)
  • 5
    • 0031171184 scopus 로고    scopus 로고
    • Developmental phenotypic plasticity: where ecology and evolution meet molecular biology
    • Callahan HS, Pigliucci M, Schlichting CD. 1997. Developmental phenotypic plasticity: where ecology and evolution meet molecular biology. BioEssays 19: 519-25.
    • (1997) BioEssays , vol.19 , pp. 519-525
    • Callahan, H.S.1    Pigliucci, M.2    Schlichting, C.D.3
  • 7
    • 0034029892 scopus 로고    scopus 로고
    • Robustness against mutations in genetic networks of yeast
    • Wagner A. 2002. Robustness against mutations in genetic networks of yeast. Nat Genet 24: 355-61.
    • (2002) Nat Genet , vol.24 , pp. 355-361
    • Wagner, A.1
  • 9
    • 33847268619 scopus 로고    scopus 로고
    • Robustness can evolve gradually in complex regulatory gene networks with varying topology
    • Ciliberti S, Martin OC, Wagner A. 2007. Robustness can evolve gradually in complex regulatory gene networks with varying topology. PLOS Comp Biol 3: e15.
    • (2007) PLOS Comp Biol , vol.3
    • Ciliberti, S.1    Martin, O.C.2    Wagner, A.3
  • 10
    • 43849087696 scopus 로고    scopus 로고
    • Consistency principle in biological dynamical systems
    • Kaneko K, Furusawa C. 2008. Consistency principle in biological dynamical systems. Theory Biosci 127: 195-204.
    • (2008) Theory Biosci , vol.127 , pp. 195-204
    • Kaneko, K.1    Furusawa, C.2
  • 11
    • 35348827221 scopus 로고    scopus 로고
    • Evolution of robustness to noise and mutation in gene expression dynamics
    • Kaneko K. 2007. Evolution of robustness to noise and mutation in gene expression dynamics. PLoS One 2: e434.
    • (2007) PLoS One , vol.2
    • Kaneko, K.1
  • 14
    • 0031031823 scopus 로고
    • Isologous diversification: a theory of cell differentiation
    • Kaneko K, Yomo T. 1995. Isologous diversification: a theory of cell differentiation. Bull Math Biol 59: 139-96.
    • (1995) Bull Math Biol , vol.59 , pp. 139-196
    • Kaneko, K.1    Yomo, T.2
  • 18
    • 66449090934 scopus 로고    scopus 로고
    • Reprogramming cell fates: reconciling rarity with robustness
    • Huang S. 2009. Reprogramming cell fates: reconciling rarity with robustness. BioEssays 31: 546-60.
    • (2009) BioEssays , vol.31 , pp. 546-560
    • Huang, S.1
  • 20
    • 0036124174 scopus 로고    scopus 로고
    • Neural stem cells and regulation of cell number
    • Sommer L, Rao M. 2002. Neural stem cells and regulation of cell number. Prog Neurobiol 66: 1-18.
    • (2002) Prog Neurobiol , vol.66 , pp. 1-18
    • Sommer, L.1    Rao, M.2
  • 21
    • 6044270503 scopus 로고    scopus 로고
    • The origin of hematopietic cell type diversity
    • Hoang T. 2004. The origin of hematopietic cell type diversity. Oncogene 23: 7188-98.
    • (2004) Oncogene , vol.23 , pp. 7188-7198
    • Hoang, T.1
  • 22
    • 47849106044 scopus 로고    scopus 로고
    • Regulative differentiation as bifurcation of interacting cell population
    • Nakajima A, Kaneko K. 2008. Regulative differentiation as bifurcation of interacting cell population. J Theor Biol 253: 779-87.
    • (2008) J Theor Biol , vol.253 , pp. 779-787
    • Nakajima, A.1    Kaneko, K.2
  • 25
    • 19544379881 scopus 로고    scopus 로고
    • Stochasticity in gene expression: from theories to phenotypes
    • Kaern M, Elston TC, Blake WJ, Collins JJ. 2005. Stochasticity in gene expression: from theories to phenotypes. Nat Rev Genet 6: 451-64.
    • (2005) Nat Rev Genet , vol.6 , pp. 451-464
    • Kaern, M.1    Elston, T.C.2    Blake, W.J.3    Collins, J.J.4
  • 26
    • 47649125318 scopus 로고    scopus 로고
    • Tuning gene expression to changing environments: from rapid responses to evolutionary adaptation
    • López-Maury L, Marguerat S, Bähler J. 2008. Tuning gene expression to changing environments: from rapid responses to evolutionary adaptation. Nat Rev Genet 9: 583-93.
    • (2008) Nat Rev Genet , vol.9 , pp. 583-593
    • López-Maury, L.1    Marguerat, S.2    Bähler, J.3
  • 27
    • 77956520011 scopus 로고    scopus 로고
    • Functional roles for noise in genetic circuits
    • Eldar A, Elowitz MB. 2010. Functional roles for noise in genetic circuits. Nature 467: 167-73.
    • (2010) Nature , vol.467 , pp. 167-173
    • Eldar, A.1    Elowitz, M.B.2
  • 28
    • 54049118842 scopus 로고    scopus 로고
    • Relevance of phenotypic noise to adaptation and evolution
    • Kaneko K, Furusawa C. 2008. Relevance of phenotypic noise to adaptation and evolution. IET Syst Biol 2: 234-46.
    • (2008) IET Syst Biol , vol.2 , pp. 234-246
    • Kaneko, K.1    Furusawa, C.2
  • 29
    • 46449110083 scopus 로고    scopus 로고
    • Shaping robust system through evolution
    • Kaneko K. 2008. Shaping robust system through evolution. Chaos 18: 026112.
    • (2008) Chaos , vol.18 , pp. 026112
    • Kaneko, K.1
  • 30
    • 70849108984 scopus 로고    scopus 로고
    • Relationship among phenotypic plasticity, genetic and epigenetic fluctuations, robustness, and evolovability; Waddington's legacy revisited under the spirit of Einstein
    • Kaneko K. 2009. Relationship among phenotypic plasticity, genetic and epigenetic fluctuations, robustness, and evolovability; Waddington's legacy revisited under the spirit of Einstein. J BioSci 34: 529-42.
    • (2009) J BioSci , vol.34 , pp. 529-542
    • Kaneko, K.1
  • 31
    • 79251562844 scopus 로고    scopus 로고
    • Proportionality between variances in gene expression induced by noise and mutation: consequence of evolutionary robustness
    • Kaneko K. 2011. Proportionality between variances in gene expression induced by noise and mutation: consequence of evolutionary robustness. BMC Evol Biol 11: 27.
    • (2011) BMC Evol Biol , vol.11 , pp. 27
    • Kaneko, K.1
  • 32
    • 33847650979 scopus 로고    scopus 로고
    • Robustness and evolvability in genetic regulatory networks
    • Aldana M, Balleza E, Kauffman S, Resendiz O. 2007. Robustness and evolvability in genetic regulatory networks. J Theor Biol 245: 433-48.
    • (2007) J Theor Biol , vol.245 , pp. 433-448
    • Aldana, M.1    Balleza, E.2    Kauffman, S.3    Resendiz, O.4
  • 33
    • 1842687878 scopus 로고    scopus 로고
    • The yeast cell-cycle network is robustly designed
    • Li F, Long T, Lu Y, Ouyang Q, et al. 2004. The yeast cell-cycle network is robustly designed Proc Natl Acad Sci USA 101: 4781-6.
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 4781-4786
    • Li, F.1    Long, T.2    Lu, Y.3    Ouyang, Q.4
  • 34
    • 33645531633 scopus 로고    scopus 로고
    • An evolutionary relationship between genetic variation and phenotypic fluctuation
    • Kaneko K, Furusawa C. 2006. An evolutionary relationship between genetic variation and phenotypic fluctuation. J Theor Biol 240: 78-86.
    • (2006) J Theor Biol , vol.240 , pp. 78-86
    • Kaneko, K.1    Furusawa, C.2
  • 35
    • 64549132963 scopus 로고    scopus 로고
    • Funnel landscape and mutational robustness as a result of evolution under thermal noise
    • Sakata A, Hukushima K, Kaneko K. 2009. Funnel landscape and mutational robustness as a result of evolution under thermal noise. Phys Rev Lett 102: 148101.
    • (2009) Phys Rev Lett , vol.102 , pp. 148101
    • Sakata, A.1    Hukushima, K.2    Kaneko, K.3
  • 37
    • 0034712109 scopus 로고    scopus 로고
    • Out of Eden: stem cells and their niches
    • Watt FM, Hogan BLM. 2000. Out of Eden: stem cells and their niches. Science 287: 1427-30.
    • (2000) Science , vol.287 , pp. 1427-1430
    • Watt, F.M.1    Hogan, B.L.M.2
  • 38
    • 0030886881 scopus 로고    scopus 로고
    • Cell-cell interaction in prostate gene regulation and cytodifferentiation
    • Liu AY, True LD, LaTray L, Nelson PS, et al. 1997. Cell-cell interaction in prostate gene regulation and cytodifferentiation. Proc Natl Acad Sci USA 94: 10705-10.
    • (1997) Proc Natl Acad Sci USA , vol.94 , pp. 10705-10710
    • Liu, A.Y.1    True, L.D.2    LaTray, L.3    Nelson, P.S.4
  • 39
    • 0025641727 scopus 로고
    • Stem cells: attributes, cycles, apirals, pitfalls and uncertainties
    • Potten CS, Loeffer M. 1990. Stem cells: attributes, cycles, apirals, pitfalls and uncertainties. Development 110: 1001-20.
    • (1990) Development , vol.110 , pp. 1001-1020
    • Potten, C.S.1    Loeffer, M.2
  • 40
    • 0030933062 scopus 로고    scopus 로고
    • Regulatory mechanisms in stem cell biology
    • Morrison SJ, Shah NM, Anderson DJ. 1997. Regulatory mechanisms in stem cell biology. Cell 88: 287-98.
    • (1997) Cell , vol.88 , pp. 287-298
    • Morrison, S.J.1    Shah, N.M.2    Anderson, D.J.3
  • 41
    • 77952914558 scopus 로고    scopus 로고
    • The potential landscape of genetic circuits imposes the arrow of time in stem cell differentiation
    • Wang J, Xu L, Wang E, Huang S. 2010. The potential landscape of genetic circuits imposes the arrow of time in stem cell differentiation. Biophys J 99: 29-39.
    • (2010) Biophys J , vol.99 , pp. 29-39
    • Wang, J.1    Xu, L.2    Wang, E.3    Huang, S.4
  • 42
    • 50949083520 scopus 로고    scopus 로고
    • Developmental potential describing morphogenesis in vivo and in vitro
    • Kaneko K, Sato K, Michiue T, Okabayashi K, et al. 2008. Developmental potential describing morphogenesis in vivo and in vitro. J Exp Zool B 310: 492-503.
    • (2008) J Exp Zool B , vol.310 , pp. 492-503
    • Kaneko, K.1    Sato, K.2    Michiue, T.3    Okabayashi, K.4
  • 43
    • 0032127725 scopus 로고    scopus 로고
    • Emergence of rules in cell society: differentiation, hierarchy, and stability
    • Furusawa C, Kaneko K. 1998. Emergence of rules in cell society: differentiation, hierarchy, and stability. Bull Math Biol 60: 659-87.
    • (1998) Bull Math Biol , vol.60 , pp. 659-687
    • Furusawa, C.1    Kaneko, K.2
  • 44
    • 0035925930 scopus 로고    scopus 로고
    • Theory of robustness of irreversible differentiation in a stem cell system: chaos hypothesis
    • Furusawa C, Kaneko K. 2001. Theory of robustness of irreversible differentiation in a stem cell system: chaos hypothesis. J Theor Biol 209: 395-416.
    • (2001) J Theor Biol , vol.209 , pp. 395-416
    • Furusawa, C.1    Kaneko, K.2
  • 45
    • 0033533157 scopus 로고    scopus 로고
    • Isologous diversification for robust development of cell society
    • Kaneko K, Yomo T. 1999. Isologous diversification for robust development of cell society. J Theor Biol 199: 243-56.
    • (1999) J Theor Biol , vol.199 , pp. 243-256
    • Kaneko, K.1    Yomo, T.2
  • 46
    • 67449141030 scopus 로고    scopus 로고
    • Chaotic expression dynamics implies pluripotency: when theory and experimentation meet
    • Furusawa C, Kaneko K. 2009. Chaotic expression dynamics implies pluripotency: when theory and experimentation meet. Biol Direct 4: 17.
    • (2009) Biol Direct , vol.4 , pp. 17
    • Furusawa, C.1    Kaneko, K.2
  • 47
    • 69249215528 scopus 로고    scopus 로고
    • The cyclic gene Hes1 contribute to diverse differentiation responses of embryonic stem cells
    • Kobayashi T, Mizuno H, Imayoshi I, Furusawa C, et al. 2009. The cyclic gene Hes1 contribute to diverse differentiation responses of embryonic stem cells. Gene Dev 23: 1870-5.
    • (2009) Gene Dev , vol.23 , pp. 1870-1875
    • Kobayashi, T.1    Mizuno, H.2    Imayoshi, I.3    Furusawa, C.4
  • 48
    • 41549140462 scopus 로고    scopus 로고
    • Oscillations in Notch signaling regulate maintenance of neural progenitors
    • Shimojo H, Ohtsuka T, Kageyama R. 2008. Oscillations in Notch signaling regulate maintenance of neural progenitors. Neuron 58: 52-64.
    • (2008) Neuron , vol.58 , pp. 52-64
    • Shimojo, H.1    Ohtsuka, T.2    Kageyama, R.3
  • 49
    • 44349162752 scopus 로고    scopus 로고
    • Transcriptome-wide noise controls lineage choice in mammalian progenitor cells
    • Chang HH, Hemberg M, Barahona M, Ingber DE, et al. 2008. Transcriptome-wide noise controls lineage choice in mammalian progenitor cells. Nature 453: 544-8.
    • (2008) Nature , vol.453 , pp. 544-548
    • Chang, H.H.1    Hemberg, M.2    Barahona, M.3    Ingber, D.E.4
  • 50
    • 37549002155 scopus 로고    scopus 로고
    • Nanog safeguards pluripotency and mediates germline development
    • Chambers I, Dilva J, Colby D, Nichols J, et al. 2007. Nanog safeguards pluripotency and mediates germline development. Nature 450: 1230-4.
    • (2007) Nature , vol.450 , pp. 1230-1234
    • Chambers, I.1    Dilva, J.2    Colby, D.3    Nichols, J.4
  • 51
    • 53049092465 scopus 로고    scopus 로고
    • Dynamic equilibrium and heterogeneity of mouse pluripotent stem cells with distinct functional and epigenetic states
    • Hayashi K, Lopes SM, Tang F, Surani MA. 2008. Dynamic equilibrium and heterogeneity of mouse pluripotent stem cells with distinct functional and epigenetic states. Cell Stem Cell 3: 391-401.
    • (2008) Cell Stem Cell , vol.3 , pp. 391-401
    • Hayashi, K.1    Lopes, S.M.2    Tang, F.3    Surani, M.A.4
  • 52
    • 33746415885 scopus 로고    scopus 로고
    • A comprehensive library of fluorescent transcriptional reporters for Escherichia coli
    • Zaslaver A, Bren A, Ronen M, Itzkovitz S, et al. 2006. A comprehensive library of fluorescent transcriptional reporters for Escherichia coli Nat Methods 3: 623-8.
    • (2006) Nat Methods , vol.3 , pp. 623-628
    • Zaslaver, A.1    Bren, A.2    Ronen, M.3    Itzkovitz, S.4
  • 53
    • 33745287724 scopus 로고    scopus 로고
    • Noise in protein expression scales with natural protein abundance
    • Bar-Even A, Paulsson J, Maheshri N, Carmi M, et al. 2006. Noise in protein expression scales with natural protein abundance. Nat Genet 38: 636-43.
    • (2006) Nat Genet , vol.38 , pp. 636-643
    • Bar-Even, A.1    Paulsson, J.2    Maheshri, N.3    Carmi, M.4
  • 54
    • 0016798768 scopus 로고
    • The developmental capacity of nuclei transplanted from keratinized skin cells of adult frogs
    • Gurdon JB, Laskey RA, Reeves OR. 1975. The developmental capacity of nuclei transplanted from keratinized skin cells of adult frogs. J Embryol Exp Morphol 34: 93-112.
    • (1975) J Embryol Exp Morphol , vol.34 , pp. 93-112
    • Gurdon, J.B.1    Laskey, R.A.2    Reeves, O.R.3
  • 55
    • 36248966518 scopus 로고    scopus 로고
    • Induction of pluripotent stem cells from adult human fibroblasts by defined factors
    • Takahashi K, Tanabe K, Ohnuki M, Narita M, et al. 2007. Induction of pluripotent stem cells from adult human fibroblasts by defined factors. Cell 131: 861-72.
    • (2007) Cell , vol.131 , pp. 861-872
    • Takahashi, K.1    Tanabe, K.2    Ohnuki, M.3    Narita, M.4
  • 56
    • 71149095052 scopus 로고    scopus 로고
    • Somatic sex reprogramming of adult ovaries to testes by FOXL2 ablation
    • Uhlenhaut MH, Jakob S, Anlag K, Eisenberger T, et al. 2009. Somatic sex reprogramming of adult ovaries to testes by FOXL2 ablation. Cell 139: 1130-42.
    • (2009) Cell , vol.139 , pp. 1130-1142
    • Uhlenhaut, M.H.1    Jakob, S.2    Anlag, K.3    Eisenberger, T.4
  • 57
    • 0015074045 scopus 로고
    • Differentiation of malignant to benign cells
    • Kauffman S. 1971. Differentiation of malignant to benign cells. J Theor Biol 31: 429-51.
    • (1971) J Theor Biol , vol.31 , pp. 429-451
    • Kauffman, S.1
  • 58
    • 34247535888 scopus 로고    scopus 로고
    • A non-genetic basis for cancer progression and metastasis: self-organizing attractors in cell regulatory networks
    • Huang S, Ingber DE. 2006. A non-genetic basis for cancer progression and metastasis: self-organizing attractors in cell regulatory networks. Breast Dis 26: 27-54.
    • (2006) Breast Dis , vol.26 , pp. 27-54
    • Huang, S.1    Ingber, D.E.2
  • 59
    • 70349330663 scopus 로고    scopus 로고
    • Cancer attractors: a systems view of tumors from a gene network dynamics and developmental perspective
    • Huang S, Ernberg I, Kauffman S., 2009. Cancer attractors: a systems view of tumors from a gene network dynamics and developmental perspective. Semin Cell Dev Biol 20: 869-76.
    • (2009) Semin Cell Dev Biol , vol.20 , pp. 869-876
    • Huang, S.1    Ernberg, I.2    Kauffman, S.3
  • 60
    • 0021242388 scopus 로고
    • Tumor heterogeneity
    • Heppner GH, 1984. Tumor heterogeneity. Cancer Res 44: 2259-65.
    • (1984) Cancer Res , vol.44 , pp. 2259-2265
    • Heppner, G.H.1
  • 61
    • 0019941487 scopus 로고
    • Biological diversity in metastatic neoplasms: origins and implications
    • Filder IJ, Hart IR. 1982. Biological diversity in metastatic neoplasms: origins and implications. Science 217: 998-1003.
    • (1982) Science , vol.217 , pp. 998-1003
    • Filder, I.J.1    Hart, I.R.2
  • 63
    • 0036274359 scopus 로고    scopus 로고
    • The fundamental role of epigenetic events in cancer
    • Jones PA, Baylin SB. 2002. The fundamental role of epigenetic events in cancer. Nat Rev Genet 3: 415-26.
    • (2002) Nat Rev Genet , vol.3 , pp. 415-426
    • Jones, P.A.1    Baylin, S.B.2
  • 64
    • 0028069373 scopus 로고
    • Cellular epigenesis: topochronology of progressive spontaneous transformation of cells under growth constraint
    • Chow M, Yao A, Rubin H. 1994. Cellular epigenesis: topochronology of progressive spontaneous transformation of cells under growth constraint. Proc Natl Acad Sci USA 91: 599-603.
    • (1994) Proc Natl Acad Sci USA , vol.91 , pp. 599-603
    • Chow, M.1    Yao, A.2    Rubin, H.3
  • 65
    • 0027957664 scopus 로고
    • Cellular epigenetics: control of the size, shape, and spatial distribution of transformed foci by interactions between the transformed and nontransformed cells
    • Rubin H. 1994. Cellular epigenetics: control of the size, shape, and spatial distribution of transformed foci by interactions between the transformed and nontransformed cells. Proc Natl Acad Sci USA 91: 1039-43.
    • (1994) Proc Natl Acad Sci USA , vol.91 , pp. 1039-1043
    • Rubin, H.1
  • 66
    • 0345366593 scopus 로고
    • Normal genetically mosaic mice produced from malignant teratocarcinoma cells
    • Mintz B, Ilmensee K. 1975. Normal genetically mosaic mice produced from malignant teratocarcinoma cells. Proc Nat Acad Sci USA 72: 3585-9.
    • (1975) Proc Nat Acad Sci USA , vol.72 , pp. 3585-3589
    • Mintz, B.1    Ilmensee, K.2
  • 67
    • 0030948696 scopus 로고    scopus 로고
    • Age-dependent induction of hepatic tumor regression by the tissue microenvironment after transplantation of noplastically transformed rat liver epithelial cells into the liver
    • McCullough AR, Coleman WB, Smith GJ, Grisham JW. 1997. Age-dependent induction of hepatic tumor regression by the tissue microenvironment after transplantation of noplastically transformed rat liver epithelial cells into the liver. Cancer Res 57: 1807-73.
    • (1997) Cancer Res , vol.57 , pp. 1807-1873
    • McCullough, A.R.1    Coleman, W.B.2    Smith, G.J.3    Grisham, J.W.4
  • 68
    • 54549084468 scopus 로고    scopus 로고
    • Reprogramming multipotent tumor cells with the embryonic neural crest microenvironment
    • Kasemeier-Kulesa JC, Teddy JM, Postovit LM, Seftor EA, et al. 2008. Reprogramming multipotent tumor cells with the embryonic neural crest microenvironment. Dev Dyn 237: 2657-66.
    • (2008) Dev Dyn , vol.237 , pp. 2657-2666
    • Kasemeier-Kulesa, J.C.1    Teddy, J.M.2    Postovit, L.M.3    Seftor, E.A.4
  • 69
    • 3543073392 scopus 로고    scopus 로고
    • Reprogramming of a melanoma genome by nuclear transplantation
    • Hochedlinger K, Blelloch R, Brennan C, Yamada Y, et al. 2004. Reprogramming of a melanoma genome by nuclear transplantation. Genes Dev 18: 1875-85.
    • (2004) Genes Dev , vol.18 , pp. 1875-1885
    • Hochedlinger, K.1    Blelloch, R.2    Brennan, C.3    Yamada, Y.4


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