Proportionality between variances in gene expression induced by noise and mutation: Consequence of evolutionary robustness

BMC Evolutionary Biology

Volumn 11, Issue 1, 2011, Pages

  Kaneko, Kunihiko ^a  

^a UNIVERSITY OF TOKYO   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

ENVIRONMENTAL GRADIENT; EVOLUTIONARY BIOLOGY; EXPERIMENTAL STUDY; GENE EXPRESSION; MUTATION; NOISE; NUMERICAL MODEL; PHENOTYPIC PLASTICITY; PLASTICITY; RECOMBINATION;

ARTICLE; BIOLOGICAL MODEL; EPIGENETICS; EVOLUTION; GENE EXPRESSION; GENE REGULATORY NETWORK; GENETIC SELECTION; GENOTYPE; MUTATION; PHENOTYPE; REPRODUCTIVE FITNESS;

BIOLOGICAL EVOLUTION; EPIGENOMICS; GENE EXPRESSION; GENE REGULATORY NETWORKS; GENETIC FITNESS; GENOTYPE; MODELS, GENETIC; MUTATION; PHENOTYPE; SELECTION, GENETIC;

EID: 79251562844     PISSN: None     EISSN: 14712148     Source Type: Journal    
DOI: 10.1186/1471-2148-11-27     Document Type: Article

References (33)

1. Evolution and detection of genetic robustness. JA de Visser,, et al. Evolution 2003 57 1959 1972 10.1554/02-750R 14575319
2. Robustness against mutations in genetic networks of yeast. A Wagne (Pubitemid 30187432)
3. Robustness can evolve gradually in complex regulatory gene networks with varying topology. S Ciliberti OC Martin A Wagner, PLOS Comp Biology 2007 3 15 10.1371/journal.pcbi.0030015
4. A population Genetic Theory of Canalization. GP Wagner G Booth H Bagheri-Chaichian, Evolution 1997 51 329 347 10.2307/2411105
5. Waddington's canalization revisited: Developmental stability and evolution. ML Siegal A Bergman, Proc Nat Acad Sci USA 2002 99 10528 10532 10.1073/pnas.102303999 12082173
6. Robustness in simple biochemical networks. N Barkai S Leibler, Nature 1997 387 913 917 10.1038/43199 9202124 (Pubitemid 27289593)
7. Robustness in bacterial chemotaxis. U Alon MG Surette N Barkai S Leibler, Nature 1999 397 168 171 10.1038/16483 9923680
8. II Schmalhausen, (1949, reprinted 1986) Factors of Evolution: The Theory of Stabilizing Selection (University of Chicago Press, Chicago)
9. CH Waddington, The Strategy of the Genes (Allen & Unwin, London) 1957
10. Stochastic gene expression in a single cell. MB Elowitz AJ Levine ED Siggia PS Swain, Science 2002 297 1183 1187 10.1126/science.1070919 12183631
11. Ubiquity of log-normal distributions in intra-cellular reaction dynamics. C Furusawa T Suzuki A Kashiwagi T Yomo K Kaneko, Biophysics 2005 1 25 31 10.2142/biophysics.1.25
12. Noise in protein expression scales with natural protein abundance. A Bar-Even,, et al. Nature Genetics 2006 38 636 643 10.1038/ng1807 16715097 (Pubitemid 43927304)
13. Stochasticity in gene expression: From theories to phenotypes. M Kaern TC Elston WJ Blake JJ Collins, Nat Rev Genet 2005 6 451 464 10.1038/nrg1615 15883588 (Pubitemid 40733890)
14. K Kaneko, Life: An Introduction to Complex Systems Biology (Springer, Heidelberg and New York) 2006
15. On the relation between fluctuation and response in biological systems. K Sato Y Ito T Yomo K Kaneko, Proc Nat Acad Sci USA 2003 100 14086 14090 10.1073/pnas.2334996100 14615583 (Pubitemid 37499195)
16. An evolutionary relationship between genetic variation and phenotypic fluctuation. K Kaneko C Furusawa, J Theo Biol 2006 240 78 86 10.1016/j.jtbi.2005.08.029
17. Evolution of robustness to noise and mutation in gene expression dynamics. K Kaneko, PLoS ONE 2007 2 434 10.1371/journal.pone.0000434 17502916
18. DJ Futuyma, Evolutionary Biology (Sinauer Associates Inc., Sunderland) Second 1986
19. DL Hartl AG Clark, Principles of Population Genetics (Sinauer Assoc. Inc., Sunderland) 4 2007
20. RA Fisher, The Genetical Theory of Natural Selection (Oxford University Press) 1930
21. Shaping Robust system through evolution. K Kaneko, Chaos 2008 18 026112 10.1063/1.2912458 18601514
22. Funnel landscape and mutational robustness as a result of evolution under thermal noise. A Sakata K Hukushima K Kaneko, Phys Rev Lett 2009 102 148101 10.1103/PhysRevLett.102.148101 19392487
23. Relationship among Phenotypic Plasticity, Genetic and Epigenetic Fluctuations, Robustness, and Evolovability; K Kaneko, J BioSci 2009 34 529 542 10.1007/s12038-009-0072-9 19920339
24. M Eigen P Schuster, The Hypercycle (Springer, Heidelberg) 1979
25. Genetic Properties Influencing the Evolvability of Gene Expression. CR Landry B Lemos WJ Dickinson DL Hartl, Science 2007 317 118 10.1126/science. 1140247 17525304
26. Selection to minimize noise in living systems and its implications for the evolution of gene expression. B Lehner, Mol Syst Biol 2008 4 170 10.1038/msb.2008.11 18319722
27. Genes Confer Similar Robustness to Environmental, Stochastic, and Genetic Perturbations in Yeast PLoS One. B Lehner, 2010 9035 20140261
28. The differential genetic and environmental canalization of fitness components in Drosophila melanogaster. SC Stearns TJ Kawecki, J Evol Biol 1995 8 539 557 10.1046/j.1420-9101.1995.8050539.x (Pubitemid 26453564)
29. MW Kirschner JC Gerhart, The Plausibility of Life (Yale University Press) 2005
30. Plasticity, evolvability, and modularity in RNA. LW Ancel W Fontana, J Exp Zool 2002 288 242 283 10.1002/1097-010X(20001015)288:3<242::AID-JEZ53.0. CO;2-O
31. MJ West-Eberhard, Developmental Plasticity and Evolution (Oxford University Press) 2003
32. A connectionist model of development. E Mjolsness DH Sharp J Reisnitz, J Theor Biol 1991 152 429 453 10.1016/S0022-5193(05)80391-1 1758194
33. Gene networks capable of pattern formation: from induction to reaction-diffusion. I Salazar-Ciudad J Garcia-Fernandez RV Sole, J Theor Biol 2000 205 587 603 10.1006/jtbi.2000.2092 10931754 (Pubitemid 30627572)