-
1
-
-
0019571422
-
Noninteracting local-structure model of folding and unfolding transition in globular proteins. I. Formulation
-
10.1002/bip.1981.360200512
-
H. Abe N. Go 1980 Noninteracting local-structure model of folding and unfolding transition in globular proteins. I. Formulation Biopolymers 20 1013 10.1002/bip.1981.360200512
-
(1980)
Biopolymers
, vol.20
, pp. 1013
-
-
Abe, H.1
Go, N.2
-
2
-
-
0033552946
-
Robustness in bacterial chemotaxis
-
DOI 10.1038/16483
-
U. Alon M. G. Surette N. Barkai S. Leibler 1999 Robustness in bacterial chemotaxis Nature (London) 397 168 171 10.1038/16483 1:CAS:528: DyaK1MXntV2rsw%3D%3D (Pubitemid 29050922)
-
(1999)
Nature
, vol.397
, Issue.6715
, pp. 168-171
-
-
Alon, U.1
Surette, M.G.2
Barkai, N.3
Leibler, S.4
-
3
-
-
0034667684
-
Plasticity, evolvability, and modularity in RNA
-
10.1002/1097-010X(20001015)288:3<242::AID-JEZ5>3.0.CO;2-O
-
L. W. Ancel W. Fontana 2002 Plasticity, evolvability, and modularity in RNA J. Exp. Zool. 288 242 283 10.1002/1097-010X(20001015)288:3<242::AID- JEZ5>3.0.CO;2-O
-
(2002)
J. Exp. Zool.
, vol.288
, pp. 242-283
-
-
Ancel, L.W.1
Fontana, W.2
-
4
-
-
33745287724
-
Noise in protein expression scales with natural protein abundance
-
DOI 10.1038/ng1807, PII N1807
-
A. Bar-Even J. Paulsson N. Maheshri M. Carmi E. O'shea Y. Pilpel N. Barkai 2006 Noise in protein expression scales with natural protein abundance Nat. Genet. 38 636 643 10.1038/ng1807 1:CAS:528:DC%2BD28XltVOhurg%3D 16715097 (Pubitemid 43927304)
-
(2006)
Nature Genetics
, vol.38
, Issue.6
, pp. 636-643
-
-
Bar-Even, A.1
Paulsson, J.2
Maheshri, N.3
Carmi, M.4
O'Shea, E.5
Pilpel, Y.6
Barkai, N.7
-
5
-
-
0030797355
-
Robustness in simple biochemical networks
-
DOI 10.1038/43199
-
N. Barkai S. Leibler 1997 Robustness in simple biochemical networks Nature (London) 387 913 917 10.1038/43199 1:CAS:528:DyaK2sXkt1Kiur8%3D (Pubitemid 27289593)
-
(1997)
Nature
, vol.387
, Issue.6636
, pp. 913-917
-
-
Barkai, N.1
Leibler, S.2
-
6
-
-
0031171184
-
Developmental phenotypic plasticity: Where ecology and evolution meet molecular biology
-
10.1002/bies.950190611 1:STN:280:DyaK2szkvVygsw%3D%3D 9204769
-
H. S. Callahan M. Pigliucci C. D. Schlichting 1997 Developmental phenotypic plasticity: where ecology and evolution meet molecular biology Bioessays 19 519 525 10.1002/bies.950190611 1:STN:280:DyaK2szkvVygsw%3D%3D 9204769
-
(1997)
Bioessays
, vol.19
, pp. 519-525
-
-
Callahan, H.S.1
Pigliucci, M.2
Schlichting, C.D.3
-
7
-
-
33847268619
-
Robustness can evolve gradually in complex regulatory gene networks with varying topology
-
DOI 10.1371/journal.pcbi.0030015
-
S. Ciliberti O. C. Martin A. Wagner 2007 Robustness can evolve gradually in complex regulatory gene networks with varying topology PLoS Comp. Biol. 3 e15 10.1371/journal.pcbi.0030015 (Pubitemid 46318378)
-
(2007)
PLoS Computational Biology
, vol.3
, Issue.2
, pp. 0164-0173
-
-
Ciliberti, S.1
Martin, O.C.2
Wagner, A.3
-
8
-
-
10744228524
-
Evolution and detection of genetic robustness
-
10.1111/j.0014-3820.2003.tb00377.x 14575319
-
J. A. de Visser J. Hermisson G. P. Wagner L. Ancelmeyers H. Bagheri-Chichian J. L. Blanchard C. Lin J. M. Cheverud, et al. 2003 Evolution and detection of genetic robustness Evolution 57 1959 1972 10.1111/j.0014-3820. 2003.tb00377.x 14575319
-
(2003)
Evolution
, vol.57
, pp. 1959-1972
-
-
De Visser, J.A.1
Hermisson, J.2
Wagner, G.P.3
Ancelmeyers, L.4
Bagheri-Chichian, H.5
Blanchard, J.L.6
Lin, C.7
Cheverud, J.M.8
-
11
-
-
0037119587
-
Stochastic gene expression in a single cell
-
DOI 10.1126/science.1070919
-
M. B. Elowitz A. J. Levine E. D. Siggia P. S. Swain 2002 Stochastic gene expression in a single cell Science 297 1183 1187 10.1126/science.1070919 1:CAS:528:DC%2BD38XmsVOht7c%3D 12183631 (Pubitemid 36193353)
-
(2002)
Science
, vol.297
, Issue.5584
, pp. 1183-1186
-
-
Elowitz, M.B.1
Levine, A.J.2
Siggia, E.D.3
Swain, P.S.4
-
13
-
-
38949168210
-
A generic mechanism for adaptive growth rate regulation
-
DOI 10.1371/journal.pcbi.0040003
-
C. Furusawa K. Kaneko 2008 A generic mechanism for adaptive growth rate regulation PLoS Comput. Biol 4 e3 10.1371/journal.pcbi.0040003 18193939 (Pubitemid 351230853)
-
(2008)
PLoS Computational Biology
, vol.4
, Issue.1
, pp. 0035-0042
-
-
Furusawa, C.1
Kaneko, K.2
-
14
-
-
33644897539
-
Ubiquity of log-normal distributions in intra-cellular reaction dynamics
-
10.2142/biophysics.1.25 1:CAS:528:DC%2BD2MXntFGnsr0%3D
-
C. Furusawa T. Suzuki A. Kashiwagi T. Yomo K. Kaneko 2005 Ubiquity of log-normal distributions in intra-cellular reaction dynamics Biophysics 1 25 31 10.2142/biophysics.1.25 1:CAS:528:DC%2BD2MXntFGnsr0%3D
-
(2005)
Biophysics
, vol.1
, pp. 25-31
-
-
Furusawa, C.1
Suzuki, T.2
Kashiwagi, A.3
Yomo, T.4
Kaneko, K.5
-
15
-
-
0034051465
-
Canalization in evolutionary genetics: A stabilizing theory?
-
DOI 10.1002/(SICI)1521-1878(200004)22:4<372::AID-BIES7>3.0.CO;2-J
-
G. Gibson G. P. Wagner 2000 Canalization in evolutionary genetics: a stabilizing theory? Bioessays 22 372 380 10.1002/(SICI)1521-1878(200004)22: 4<372::AID-BIES7>3.0.CO;2-J 1:CAS:528:DC%2BD3MXmslShsL0%3D 10723034 (Pubitemid 30213499)
-
(2000)
BioEssays
, vol.22
, Issue.4
, pp. 372-380
-
-
Gibson, G.1
Wagner, G.2
-
16
-
-
0015609281
-
The logical analysis of continuous, non-linear biochemical control networks
-
10.1016/0022-5193(73)90208-7 1:CAS:528:DyaE3sXhsFGms7k%3D 4741704
-
L. Glass S. A. Kauffman 1973 The logical analysis of continuous, non-linear biochemical control networks J. Theor. Biol. 39 103 129 10.1016/0022-5193(73)90208-7 1:CAS:528:DyaE3sXhsFGms7k%3D 4741704
-
(1973)
J. Theor. Biol.
, vol.39
, pp. 103-129
-
-
Glass, L.1
Kauffman, S.A.2
-
18
-
-
66249108253
-
How evolution affects phenotypic fluctuation
-
10.1038/msb.2009.23 19401676
-
Y. Ito H. Toyota K. Kaneko T. Yomo 2009 How evolution affects phenotypic fluctuation Mol. Syst. Biol. 5 264 10.1038/msb.2009.23 19401676
-
(2009)
Mol. Syst. Biol.
, vol.5
, pp. 264
-
-
Ito, Y.1
Toyota, H.2
Kaneko, K.3
Yomo, T.4
-
19
-
-
19544379881
-
Stochasticity in gene expression: From theories to phenotypes
-
DOI 10.1038/nrg1615
-
M. Kaern T. C. Elston W. J. Blake J. J. Collins 2005 Stochasticity in gene expression: from theories to phenotypes Nat. Rev. Genet. 6 451 464 10.1038/nrg1615 1:CAS:528:DC%2BD2MXkslSnu7g%3D 15883588 (Pubitemid 40733890)
-
(2005)
Nature Reviews Genetics
, vol.6
, Issue.6
, pp. 451-464
-
-
Kaern, M.1
Elston, T.C.2
Blake, W.J.3
Collins, J.J.4
-
21
-
-
35348827221
-
Evolution of robustness to noise and mutation in gene expression dynamics
-
10.1371/journal.pone.0000434 17502916
-
K. Kaneko 2007 Evolution of robustness to noise and mutation in gene expression dynamics PLoS ONE 2 e434 10.1371/journal.pone.0000434 17502916
-
(2007)
PLoS ONE
, vol.2
, pp. 434
-
-
Kaneko, K.1
-
22
-
-
46449110083
-
Shaping Robust system through evolution
-
10.1063/1.2912458 18601514
-
K. Kaneko 2008 Shaping Robust system through evolution Chaos 18 026112 10.1063/1.2912458 18601514
-
(2008)
Chaos
, vol.18
, pp. 026112
-
-
Kaneko, K.1
-
23
-
-
33747329941
-
Food habits and habitat selection of suburban badgers (Meles meles) in Japan
-
DOI 10.1016/j.jtbi.2005.08.029
-
K. Kaneko C. Furusawa 2006 An evolutionary relationship between genetic variation and phenotypic fluctuation J. Theor. Biol. 240 78 86 10.1016/j.jtbi.2005.08.029 16212981 (Pubitemid 44243791)
-
(2006)
Journal of Zoology
, vol.270
, Issue.1
, pp. 78-89
-
-
Kaneko, Y.1
Maruyama, N.2
MacDonald, D.W.3
-
24
-
-
43849087696
-
Consistency principle in biological dynamical systems
-
10.1007/s12064-008-0034-z
-
K. Kaneko C. Furusawa 2008 Consistency principle in biological dynamical systems Theor. Biosci. 127 195 204 10.1007/s12064-008-0034-z
-
(2008)
Theor. Biosci.
, vol.127
, pp. 195-204
-
-
Kaneko, K.1
Furusawa, C.2
-
25
-
-
0033533157
-
Isologous diversification for robust development of cell society
-
DOI 10.1006/jtbi.1999.0952
-
K. Kaneko T. Yomo 1999 Isologous diversification for robust development of cell society J. Theor. Biol. 199 243 256 10.1006/jtbi.1999.0952 1:STN:280:DyaK1MzmsFertg%3D%3D 10433890 (Pubitemid 29378229)
-
(1999)
Journal of Theoretical Biology
, vol.199
, Issue.3
, pp. 243-256
-
-
Kaneko, K.1
Yomo, T.2
-
26
-
-
0034619890
-
Sympatric speciation: Compliance with phenotype diversification from a single genotype
-
DOI 10.1098/rspb.2000.1293
-
K. Kaneko T. Yomo 2000 Sympatric Speciation: compliance with phenotype diversification from a single genotype Proc. R. Soc. B London 267 2367 2373 10.1098/rspb.2000.1293 1:STN:280:DC%2BD3M7ksFaktg%3D%3D (Pubitemid 32001477)
-
(2000)
Proceedings of the Royal Society B: Biological Sciences
, vol.267
, Issue.1460
, pp. 2367-2373
-
-
Kaneko, K.1
Yomo, T.2
-
27
-
-
0036699382
-
Symbiotic sympatric speciation: Consequence of interaction-driven phenotype differentiation through developmental plasticity
-
DOI 10.1007/s101440200009
-
K. Kaneko 2002 Symbiotic sympatric speciation: Compliance with interaction-driven phenotype differentiation from a single genotype Popul. Ecol. 44 71 85 10.1007/s101440200009 (Pubitemid 35169529)
-
(2002)
Population Ecology
, vol.44
, Issue.2
, pp. 71-85
-
-
Kaneko, K.1
-
28
-
-
54249117585
-
Adaptive response of a gene network to environmental changes by attractor selection
-
10.1371/journal.pone.0000049 17183678
-
A. Kashiwagi I. Urabe K. Kaneko T. Yomo 2006 Adaptive response of a gene network to environmental changes by attractor selection PLoS ONE 1 e49 10.1371/journal.pone.0000049 17183678
-
(2006)
PLoS ONE
, vol.1
, pp. 49
-
-
Kashiwagi, A.1
Urabe, I.2
Kaneko, K.3
Yomo, T.4
-
32
-
-
34250785284
-
Genetic properties influencing the evolvability of gene expression
-
DOI 10.1126/science.1140247
-
C. R. Landry B. Lemos S. A. Rifkin W. J. Dickinson D. L. Hartl 2007 Genetic properties influencing the evolvability of gene expression Science 317 118 121 10.1126/science.1140247 1:CAS:528:DC%2BD2sXnt1SjtLY%3D 17525304 (Pubitemid 47056469)
-
(2007)
Science
, vol.317
, Issue.5834
, pp. 118-121
-
-
Landry, C.R.1
Lemos, B.2
Rifkin, S.A.3
Dickinson, W.J.4
Hartl, D.L.5
-
33
-
-
42949131308
-
Selection to minimise noise in living systems and its implications for the evolution of gene expression
-
DOI 10.1038/msb.2008.11, PII MSB200811
-
B. Lehner 2008 Selection to minimize noise in living systems and its implications for the evolution of gene expression Mol. Syst. Biol. 4 170 10.1038/msb.2008.11 18319722 (Pubitemid 351654059)
-
(2008)
Molecular Systems Biology
, vol.4
, pp. 170
-
-
Lehner, B.1
-
36
-
-
0025991216
-
A connectionist model of development
-
10.1016/S0022-5193(05)80391-1 1:STN:280:DyaK38%2FpvFKgtw%3D%3D 1758194
-
E. Mjolsness D. H. Sharp J. Reinitz 1991 A connectionist model of development J. Theor. Biol. 152 429 453 10.1016/S0022-5193(05)80391-1 1:STN:280:DyaK38%2FpvFKgtw%3D%3D 1758194
-
(1991)
J. Theor. Biol.
, vol.152
, pp. 429-453
-
-
Mjolsness, E.1
Sharp, D.H.2
Reinitz, J.3
-
37
-
-
0028963362
-
Toward an outline of the topography of a realistic protein-folding funnel
-
10.1073/pnas.92.8.3626 1:CAS:528:DyaK2MXltFSmsbY%3D 7724609
-
J. N. Onuchic P. G. Wolynes Z. Luthey-Schulten N. D. Socci 1995 Toward an outline of the topography of a realistic protein-folding funnel Proc. Natl. Acad. Sci. USA 92 3626 3630 10.1073/pnas.92.8.3626 1:CAS:528:DyaK2MXltFSmsbY%3D 7724609
-
(1995)
Proc. Natl. Acad. Sci. USA
, vol.92
, pp. 3626-3630
-
-
Onuchic, J.N.1
Wolynes, P.G.2
Luthey-Schulten, Z.3
Socci, N.D.4
-
38
-
-
0016720819
-
Effect of the field fluctuation on a macromolecular system
-
10.1016/0022-5193(75)90049-1 1:STN:280:DyaE2M3hsFeltw%3D%3D 1152482
-
F. Oosawa 1975 Effect of the field fluctuation on a macromolecular system J. Theor. Biol. 52 175 10.1016/0022-5193(75)90049-1 1:STN:280: DyaE2M3hsFeltw%3D%3D 1152482
-
(1975)
J. Theor. Biol.
, vol.52
, pp. 175
-
-
Oosawa, F.1
-
39
-
-
33745981182
-
Phenotypic plasticity and evolution by genetic assimilation
-
DOI 10.1242/jeb.02070
-
M. Pigliucci C. J. Murren C. D. Schlichting 2006 Phenotypic plasticity and evolution by genetic assimilation J. Exp. Biol. 209 2362 2367 10.1242/jeb.02070 16731812 (Pubitemid 44065530)
-
(2006)
Journal of Experimental Biology
, vol.209
, Issue.12
, pp. 2362-2367
-
-
Pigliucci, M.1
Murren, C.J.2
Schlichting, C.D.3
-
40
-
-
18344398543
-
Gene networks capable of pattern formation: From induction to reaction-diffusion
-
DOI 10.1006/jtbi.2000.2092
-
I. Salazar-Ciudad J. Garcia-Fernandez R. V. Sole 2000 Gene networks capable of pattern formation: from induction to reaction-diffusion J. Theor. Biol. 205 587 603 10.1006/jtbi.2000.2092 1:CAS:528:DC%2BD3cXlsVSrsr4%3D 10931754 (Pubitemid 30627572)
-
(2000)
Journal of Theoretical Biology
, vol.205
, Issue.4
, pp. 587-603
-
-
Salazar-Ciudad, I.1
Garcia-Fernandez, J.2
Sole, R.V.3
-
41
-
-
64549132963
-
Funnel landscape and mutational robustness as a result of evolution under thermal noise
-
10.1103/PhysRevLett.102.148101 19392487
-
A. Sakata K. Hukushima K. Kaneko 2009 Funnel landscape and mutational robustness as a result of evolution under thermal noise Phys. Rev. Lett. 102 148101 10.1103/PhysRevLett.102.148101 19392487
-
(2009)
Phys. Rev. Lett.
, vol.102
, pp. 148101
-
-
Sakata, A.1
Hukushima, K.2
Kaneko, K.3
-
42
-
-
34547277414
-
Evolution equation of phenotype distribution: General formulation and application to error catastrophe
-
DOI 10.1103/PhysRevE.75.061909
-
K. Sato K. Kaneko 2007 Evolution equation of phenotype distribution: general formulation and application to error catastrophe Phys. Rev. E 75 061909 10.1103/PhysRevE.75.061909 (Pubitemid 47140269)
-
(2007)
Physical Review E - Statistical, Nonlinear, and Soft Matter Physics
, vol.75
, Issue.6
, pp. 061909
-
-
Sato, K.1
Kaneko, K.2
-
45
-
-
0017185026
-
Non-genetic individuality: Chance in the single cell
-
10.1038/262467a0 1:STN:280:DyaE283mslKmug%3D%3D
-
J. L. Spudich D. E. Koshland Jr 1976 Non-genetic individuality: chance in the single cell Nature (London) 262 467 471 10.1038/262467a0 1:STN:280:DyaE283mslKmug%3D%3D
-
(1976)
Nature (London)
, vol.262
, pp. 467-471
-
-
Spudich, J.L.1
Koshland Jr, D.E.2
-
46
-
-
0035955356
-
Single-molecule analysis of chemotactic signaling in Dictyostelium cells
-
DOI 10.1126/science.1063951
-
M. Ueda Y. Sako T. Tanaka P. Devreotes T. Yanagida 2001 Single-molecule analysis of chemotactic signaling in Dictyostelium cells Science 294 864 867 10.1126/science.1063951 1:CAS:528:DC%2BD3MXotVCgsrw%3D 11679673 (Pubitemid 33032106)
-
(2001)
Science
, vol.294
, Issue.5543
, pp. 864-867
-
-
Ueda, M.1
Sako, Y.2
Tanaka, T.3
Devreotes, P.4
Yanagida, T.5
-
47
-
-
51149203927
-
Canalization of development and the inheritance of acquired characters
-
10.1038/150563a0
-
C. H. Waddington 1942 Canalization of development and the inheritance of acquired characters Nature (London) 150 563 565 10.1038/150563a0
-
(1942)
Nature (London)
, vol.150
, pp. 563-565
-
-
Waddington, C.H.1
-
48
-
-
0001102269
-
Genetic assimilation of an acquired character
-
10.2307/2405747
-
C. H. Waddington 1953 Genetic assimilation of an acquired character Evolution 7 118 126 10.2307/2405747
-
(1953)
Evolution
, vol.7
, pp. 118-126
-
-
Waddington, C.H.1
-
50
-
-
0034029892
-
Robustness against mutations in genetic networks of yeast
-
DOI 10.1038/74174
-
A. Wagner 2000 Robustness against mutations in genetic networks of yeast Nat. Genet. 24 355 361 10.1038/74174 1:CAS:528:DC%2BD3cXisVCjsb8%3D 10742097 (Pubitemid 30187432)
-
(2000)
Nature Genetics
, vol.24
, Issue.4
, pp. 355-361
-
-
Wagner, A.1
-
52
-
-
0030617955
-
A population genetic theory of canalization
-
10.2307/2411105
-
G. P. Wagner G. Booth H. Bagheri-Chaichian 1997 A population genetic theory of canalization Evolution 51 329 347 10.2307/2411105
-
(1997)
Evolution
, vol.51
, pp. 329-347
-
-
Wagner, G.P.1
Booth, G.2
Bagheri-Chaichian, H.3
-
53
-
-
33748455499
-
Funneled landscape leads to robustness of cellular networks: MAPK signal transduction
-
DOI 10.1529/biophysj.106.086777
-
J. Wang B. Huang X. Xia Z. Sun 2006 Funneled landscape leads to robustness of cellular networks: MAPK signal transduction Biophys. J. 91 L54 L56 10.1529/biophysj.106.086777 1:CAS:528:DC%2BD28XovFygtbs%3D 16815898 (Pubitemid 44352425)
-
(2006)
Biophysical Journal
, vol.91
, Issue.5
-
-
Wang, J.1
Huang, B.2
Xia, X.3
Sun, Z.4
-
54
-
-
0034118830
-
Plasticity versus canalization: Population differences in the timing of shade-avoidance responses
-
1:STN:280:DC%2BD3cvgtlKktQ%3D%3D 10937221
-
C. Weinig 2000 Plasticity versus canalization: Population differences in the timing of shade-avoidance responses Evolution 54 441 451 1:STN:280:DC%2BD3cvgtlKktQ%3D%3D 10937221
-
(2000)
Evolution
, vol.54
, pp. 441-451
-
-
Weinig, C.1
|