An integrated microfluidic system capable of sample pretreatment and hybridization for microarrays

Microfluidics and Nanofluidics

Volumn 10, Issue 5, 2011, Pages 999-1009

  Tai, Chien Hsuan ^a   Shin, Jyh Wei ^a   Chang, Tsuey Yu ^a   Hsiung, Suz Kai ^b   Lin, Chun Che ^a   Lee, Gwo Bin ^a  

^a NATIONAL CHENG KUNG UNIVERSITY   (Taiwan)

^b FOOYIN UNIVERSITY   (Taiwan)

Author keywords

cDNA extraction; Cell lysis; Hybridization; MEMS; Microarray; Microfluidics; mRNA extraction; Reverse transcription

Indexed keywords

CDNA EXTRACTION; CELL LYSIS; HYBRIDIZATION; MRNA EXTRACTION; REVERSE TRANSCRIPTION;

FLUIDIC DEVICES; MICROARRAYS; ORGANIC ACIDS; RNA; TRANSCRIPTION;

MICROFLUIDICS;

EID: 79956104182     PISSN: 16134982     EISSN: 16134990     Source Type: Journal    
DOI: 10.1007/s10404-010-0729-6     Document Type: Article

References (45)

1. DG Albertson D Pinkel 2003 Genomic microarrays in human genetic disease and cancer Hum Mol Genet 12 R145 R152 10.1093/hmg/ddg261
2. PA Auroux D Iossifidi DR Reyes A Manz 2002 Micro total analysis systems. 2 Anal Stand Oper Appl Anal Chem 74 2637 2652
3. Baner J, Isaksson A, Waldenstroem E, Jarvius J, Landegren U, Nilsson M (2003) Parallel gene analysis with allele-specific padlock probes and tag microarrays. Nucl Acids Res 31:e103/1-e103/7
4. MPS Brown WN Grundy D Lin N Cristianini CW Sugnet TS Furey M Ares Jr D Haussler 2000 Knowledge-based analysis of microarray gene expression data by using support vector machines PNAS 97 262 267 10.1073/pnas.97.1.262 (Pubitemid 30055819)
5. M Chee R Yang E Hubbell A Berno XC Huang D Stern J Winkler DJ Lockhart MS Morris SPA Fodor 1996 Accessing genetic information with high-density DNA arrays Science 274 610 614 10.1126/science.274.5287.610 (Pubitemid 26360440)
6. JM Chirgwin AE Przybyla RJ MacDonald WJ Rutter 1979 Isolation of biologically active ribonucleic acid from sources enriched in ribonuclease Biochemistry 18 5294 5299 10.1021/bi00591a005 (Pubitemid 10140274)
7. JW Choi CH Ahn S Bhansali HT Henderson 2000 A new magnetic bead-based, filterless bio-separator with planar electromagnet surfaces for integrated bio-detection systems Sens Actuators B Chem 68 34 39 10.1016/S0925-4005(00) 00458-5
8. P Chomczynski 1993 A reagent for the single-step simultaneous isolation of RNA. DNA and proteins from cell and tissue samples Biotechniques 15 532 537 (Pubitemid 23270488)
9. P Chomczynski N Sacchi 1987 Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction Anal Biochem 162 1 156 159 10.1016/0003-2697(87)90021-2 (Pubitemid 17064313)
10. CF Edman DE Raymond DJ Wu E Tu RG Sosnowski WF Butler M Nerenberg MJ Heller 1997 Electric field directed nucleic acid hybridization on microchips Nucl Acids Res 25 4907 4914 10.1093/nar/25.24.4907 (Pubitemid 28022249)
11. JB Fan SX Hu WC Craumer DL Barker 2005 BeadArray™-based solutions for enabling the promise of pharmacogenomics Biotechniques 39 583 588 10.2144/000112047
12. Froehlich H, Fellmann M, Sueltmann H, Poustka, Beissbarth T (2007) Large scale statistical inference of signaling pathways from RNAi and microarray data. Bioinformatics. doi: 10.1186/1471-2105-8-386 (Pubitemid 351250487)
13. X Gao E Gulari X Zhou 2004 In situ synthesis of oligonucleotide microarrays Biopolymers 73 5 579 596 10.1002/bip.20005 (Pubitemid 38480705)
14. MAM Gijs 2004 Magnetic bead handling on-chip: new opportunities for analytical applications Microfluid Nanofluid 1 22 40 (Pubitemid 41166499)
15. V Grimm S Ezaki M Susa C Knabbe RD Schmid TT Bachmann 2004 Use of DNA microarrays for rapid genotyping of TEM beta-lactamases that confer resistance J Clin Microbiol 42 3766 3777 10.1128/JCM.42.8.3766-3774.2004 (Pubitemid 39045711)
16. Grodzinski P, Liu R, Yang J, Ward MD (2004) Microfluidic system integration in sample preparation chip-sets-a summary. In: Proceedings of the 26th annual international conference of the IEEE EMBS, pp 2615-2618 (Pubitemid 40035576)
17. JG Hacia 1999 Resequencing and mutational analysis using oligonucleotide microarrays Nat Genet 21 42 47 10.1038/4469 (Pubitemid 29031491)
18. DA Hall J Ptacek M Snyder 2007 Protein microarray technology Mech Ageing Dev 128 161 167 10.1016/j.mad.2006.11.021 (Pubitemid 46073070)
19. DP Harkin 2000 Uncovering functionally relevant signaling pathways using microarray-based expression profiling Oncologist 5 501 507 10.1634/ theoncologist.5-6-501
20. JW Hong V Studer G Hang WF Anderson SR Quake 2004 A nanoliter-scale nucleic acid processor with parallel architecture Nat Biotechnol 22 435 439 10.1038/nbt951 (Pubitemid 38451374)
21. Y Huang EL Mather JL Bell M Madou 2002 MEMS-based sample preparation for molecular diagnostics Anal Bioanal Chem 372 49 65 10.1007/s00216-001-1191-9 (Pubitemid 40819339)
22. CJ Huang HI Lin SC Shiesh GB Lee 2010 Integrated microfluidic system for rapid screening of CRP aptamers utilizing systematic evolution of ligands by exponential enrichment (SELEX) Biosens Bioelectron 7 1761 1766 10.1016/j.bios.2009.12.029
23. S Ishikawa D Komura S Tsuji K Nishimura S Yamamoto B Panda J Huang M Fukayama KW Jones H Aburatani 2005 Allelic dosage analysis with genotyping microarrays Biochem Biophys Res Commun 333 1309 1314 10.1016/j.bbrc.2005.06.040 (Pubitemid 40910145)
24. SJ Jang JC Soria L Wang KA Hassan RC Morice GL Walsh WK Hong Li Mao 2001 Activation of melanoma antigen tumor antigens occurs early in lung carcinogenesis Cancer Res 61 7959 7963 (Pubitemid 33049388)
25. M Kathy 2006 Modification of the standard trizol-based technique improves the integrity of RNA isolated from RNase-rich placental tissue Clin Chem 52 159 160 10.1373/clinchem.2005.059758 (Pubitemid 43032488)
26. MK Kerr GA Churchill 2001 Experimental design for gene expression microarrays Biostatistics 2 183 201 10.1093/biostatistics/2.2.183 1097.62562 (Pubitemid 33278606)
27. KY Lien WC Lee HY Lei GB Lee 2007 Integrated reverse transcription polymerase chain reaction systems for virus detection Biosens Bioelectron 22 1739 1748 10.1016/j.bios.2006.08.010 (Pubitemid 46185975)
28. CJ Liu KY Lien CY Weng JW Shin TY Chang GB Lee 2009 Magnetic-bead-based microfluidic system for ribonucleic acid extraction and reverse transcription processes Biomed Microdevices 11 339 350 10.1007/s10544-008-9240-1
29. T Mary-Huard JJ Daudin S Robin F Bitton E Cabannes P Hilson 2004 Spotting effect in microarray experiments BMC Bioinformatics 5 63 10.1186/1471-2105-5-63 (Pubitemid 38751273)
30. E Meaburn LM Butcher LC Schalkwyk R Plomin 2006 Genotyping pooled DNA using 100K SNP microarrays: a step towards genome wide association scans Nucl Acids Res 34 4 e27 10.1093/nar/gnj027
31. L Mezzasoma T Bacarese-Hamilton MD Cristina R Rossi F Bistoni A Crisanti 2002 Antigen microarrays for serodiagnosis of infectious diseases Clin Chem 48 121 130 (Pubitemid 34038131)
32. T Okamoto T Suzuki N Yamamoto 2000 Microarray fabrication with covalent attachment of DNA using bubble jet technology Nat Biotechnol 18 438 441 10.1038/74507 (Pubitemid 30217534)
33. R Radtkey L Feng M Muralhida M Duhon D Canter D DiPierro S Fallon E Tu K McElfresh M Nerenberg R Sosnowski 2000 Rapid, high fidelity analysis of simple sequence repeats on an electronically active DNA microchip Nucl Acids Res 28 E17 10.1093/nar/28.7.e17
34. G Russo C Zegar A Giordano 2003 Advantages and limitations of microarray technology in human cancer Oncogene 22 6497 6507 10.1038/sj.onc.1206865 (Pubitemid 37376427)
35. S Selvey EW Thompson K Matthaei RA Lea MG Irivng LR Griffiths 2001 Beta-actin-an unsuitable internal control for RT-PCR Mol Cell Probes 15 5 307 311 10.1006/mcpr.2001.0376 (Pubitemid 33105000)
36. E Southern K Mir M Shchepinov 1999 Molecular interactions on microarrays Nat Genet 21 5 9 10.1038/4429 (Pubitemid 29031484)
37. HY Tseng CH Wang WY Lin GB Lee 2007 Membrane-activated microfluidic rotary devices for pumping and mixing Biomed Microdevices 9 545 554 10.1007/s10544-007-9062-6
38. JM Vaquerizas J Dopazo R Díaz-Uriarte 2004 Web-based diagnosis and normalization for microarray data Bioinformatics 20 18 3656 3658 10.1093/bioinformatics/bth401 (Pubitemid 40136807)
39. T Vilkner D Janasek A Manz 2004 Micro total analysis systems Recent Dev Anal Chem 76 3373 3385
40. L Wang PCH Li 2010 Optimization of a microfluidic microarray device for the fast discrimination of fungal pathogenic DNA Anal Biochem 400 282 288 10.1016/j.ab.2010.01.017
41. CH Wu SR Lin FJ Yu DC Wu YS Pan JS Hsieh SY Huang JY Wang 2006 Development of a high-throughput membrane-array method for molecular diagnosis of circulating tumor cells in patients with gastric cancers Int J Cancer 119 2 373 379 10.1002/ijc.21856
42. X Xiang Q Qiu RD Hegele WC Tan 2001 Comparison of different methods of total RNA extraction for viral detection in sputum J Virol Methods 94 129 135 10.1016/S0166-0934(01)00284-1 (Pubitemid 32411485)
43. YN Yang SK Hsiung GB Lee 2009 A pneumatic micropump incorporated with a normally closed valve capable of generating a high pumping rate and a high back pressure Microfluid Nanofluid 6 823 833 10.1007/s10404-008-0356-7
44. PK Yuen G Li Y Bao UR Müller 2003 Microfluidic devices for fluidic circulation and mixing improve hybridization signal intensity on DNA arrays Lab Chip 3 46 50 10.1039/b210274a (Pubitemid 41646515)
45. Y Zhang MY Coyne SG Will CH Levenson ES Kawasaki 1991 Single-base mutational analysis of cancer and genetic diseases using membrane bound modified oligonucleotides Nucl Acids Res 19 3929 3933 10.1093/nar/19.14.3929 (Pubitemid 21912763)