Modeling stochastic dynamics in biochemical systems with feedback using maximum caliber

Journal of Physical Chemistry B

Volumn 115, Issue 19, 2011, Pages 6202-6212

  Presse S ^a   Ghosh, K ^b   Dill, K A ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b UNIVERSITY OF DENVER   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BIOCHEMISTRY; REACTION RATES; STOCHASTIC SYSTEMS;

ADJUSTABLE PARAMETERS; AVERAGE RATE; BI-STABILITY; BIOCHEMICAL SYSTEMS; BISTABLES; COMPLEX REACTIONS; DYNAMICAL MODEL; FEEDBACK SYSTEMS; GENETIC TOGGLE SWITCHES; MASS ACTION LAW; MASTER EQUATIONS; MAXIMUM CALIBERS; MAXIMUM ENTROPY; MODEL ASSUMPTIONS; SIMULATED DATA; STOCHASTIC DYNAMICS; STOCHASTIC MODELING; SYNTHETIC DATA;

STOCHASTIC MODELS;

EID: 79956100924     PISSN: 15206106     EISSN: 15205207     Source Type: Journal    
DOI: 10.1021/jp111112s     Document Type: Article

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41. In the experiments of Gardner et al., (35) the Escherichia coli in which were injected the engineered plasmid containing both promoters replicated as the experiment was carried through. The set of chemical reactions above does not take this or other complications into account; rather the reactions put forth are a simple set of ingredients required to obtain bistable steady state as well as switching between such states.
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