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Volumn 54, Issue 4, 2010, Pages 281-285

Evidence for the adaptive evolution of ORF5 gene of Porcine reproductive and respiratory syndrome virus isolated in China

Author keywords

Adaptive evolution; Chinese isolates; Glycosylation; Negative selection; ORF5; Porcine reproductive and respiratory syndrome virus; Positive selection

Indexed keywords

CELL RECEPTOR; PROTEIN ORF5; UNCLASSIFIED DRUG; VIRUS GLYCOPROTEIN; GLYCOPROTEIN 5, PRRSV; VIRUS ENVELOPE PROTEIN;

EID: 79955947238     PISSN: 0001723X     EISSN: None     Source Type: Journal    
DOI: 10.4149/av_2010_04_281     Document Type: Article
Times cited : (4)

References (44)
  • 1
    • 0033923075 scopus 로고    scopus 로고
    • Mutations in the genome of porcine reproductive and respiratory syndrome virus responsible for the attenuation phenotype
    • doi:10.1007/s007050070115
    • Allende R, Kutish GF, Laegreid W, Lu Z, Lewis TL, Rock DL, Friesen J, Galeota JA, Doster AR, Osorio FA (2000): Mutations in the genome of porcine reproductive and respiratory syndrome virus responsible for the attenuation phenotype. Arch. Virol. 145, 1149-1161. doi:10.1007/s007050070115
    • (2000) Arch. Virol. , vol.145 , pp. 1149-1161
    • Allende, R.1    Kutish, G.F.2    Laegreid, W.3    Lu, Z.4    Lewis, T.L.5    Rock, D.L.6    Friesen, J.7    Galeota, J.A.8    Doster, A.R.9    Osorio, F.A.10
  • 2
    • 34250170123 scopus 로고    scopus 로고
    • Genetic diversity and phylogenetic analysis of glyco-protein 5 of PRRSV isolates in mainland China from 1996 to 2006: Coexistence of two NA-subgenotypes with great diversity
    • doi:10.1016/j.vetmic.2007.02.025
    • An TQ, Zhou YJ, Liu GQ, Tian ZJ, Li J, Qiu HJ, Tong GZ (2007): Genetic diversity and phylogenetic analysis of glyco-protein 5 of PRRSV isolates in mainland China from 1996 to 2006: coexistence of two NA-subgenotypes with great diversity. Vet. Microbiol. 123, 43-52. doi:10.1016/j.vetmic.2007.02.025
    • (2007) Vet. Microbiol. , vol.123 , pp. 43-52
    • An, T.Q.1    Zhou, Y.J.2    Liu, G.Q.3    Tian, Z.J.4    Li, J.5    Qiu, H.J.6    Tong, G.Z.7
  • 3
    • 33645776979 scopus 로고    scopus 로고
    • Infuence of N-linked glycosylation of porcine reproductive and respiratory syndrome virus GP5 on virus infectivity, antigenicity, and ability to induce neutralizing antibodies
    • doi:10.1128/JVI.80.8.3994-4004.2006
    • Ansari IH, Kwon B, Osorio FA, Pattnaik AK (2006): Infuence of N-linked glycosylation of porcine reproductive and respiratory syndrome virus GP5 on virus infectivity, antigenicity, and ability to induce neutralizing antibodies. J. Virol. 80, 3994-4004. doi:10.1128/JVI.80.8.3994-4004.2006
    • (2006) J. Virol. , vol.80 , pp. 3994-4004
    • Ansari, I.H.1    Kwon, B.2    Osorio, F.A.3    Pattnaik, A.K.4
  • 5
    • 0030634897 scopus 로고    scopus 로고
    • Nidovirales: A new order comprising Corona-viridae and Arteriviridae
    • Cavanagh D (1997): Nidovirales: a new order comprising Corona-viridae and Arteriviridae. Arch. Virol. 142, 629-633.
    • (1997) Arch. Virol. , vol.142 , pp. 629-633
    • Cavanagh, D.1
  • 6
    • 0842326022 scopus 로고    scopus 로고
    • Comparative study of adaptive molecular evolution in diferent human immunodefciency virus groups and subtypes
    • doi:10.1128/JVI.78.4.1962-1970.2004
    • Choisy M, Woelk CH, Guégan JF, Robertson DL (2004): Comparative study of adaptive molecular evolution in diferent human immunodefciency virus groups and subtypes. J. Virol. 78, 1962-1970. doi:10.1128/JVI.78.4.1962-1970.2004
    • (2004) J. Virol. , vol.78 , pp. 1962-1970
    • Choisy, M.1    Woelk, C.H.2    Guégan, J.F.3    Robertson, D.L.4
  • 7
    • 0034106003 scopus 로고    scopus 로고
    • Current knowledge on the structural proteins of porcine reproductive and respiratory syndrome (PRRS) virus: Comparison of the North American and European isolates
    • doi:10.1007/s007050050662
    • Dea S, Gagnon CA, Mardassi H, Pirzadeh B, Rogan D (2000): Current knowledge on the structural proteins of porcine reproductive and respiratory syndrome (PRRS) virus: comparison of the North American and European isolates. Arch. Virol. 145, 659-688. doi:10.1007/s007050050662
    • (2000) Arch. Virol. , vol.145 , pp. 659-688
    • Dea, S.1    Gagnon, C.A.2    Mardassi, H.3    Pirzadeh, B.4    Rogan, D.5
  • 8
    • 0242578620 scopus 로고    scopus 로고
    • A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
    • doi:10.1080/10635150390235520
    • Guindon S, Gascuel O (2003): A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst. Biol. 52, 696-704. doi:10.1080/10635150390235520
    • (2003) Syst. Biol. , vol.52 , pp. 696-704
    • Guindon, S.1    Gascuel, O.2
  • 9
    • 16344393530 scopus 로고    scopus 로고
    • Te origin and evolution of porcine reproductive and respiratory syndrome viruses
    • doi:10.1093/molbev/msi089
    • Hanada K, Suzuki Y, Nakane T, Hirose O, Gojobori T (2005): Te origin and evolution of porcine reproductive and respiratory syndrome viruses. Mol. Biol. Evol. 22, 1024-1031. doi:10.1093/molbev/msi089
    • (2005) Mol. Biol. Evol. , vol.22 , pp. 1024-1031
    • Hanada, K.1    Suzuki, Y.2    Nakane, T.3    Hirose, O.4    Gojobori, T.5
  • 10
    • 62149108264 scopus 로고    scopus 로고
    • Porcine reproductive and respiratory syndrome viruses predominant in southeastern China from 2004 to 2007 were from a common source and underwent further divergence
    • doi:10.1007/s00705-009-0316-x
    • Hu H, Li X, Zhang Z, Shuai J, Chen N, Liu G, Fang W (2009): Porcine reproductive and respiratory syndrome viruses predominant in southeastern China from 2004 to 2007 were from a common source and underwent further divergence. Arch. Virol. 154, 391-398. doi:10.1007/s00705-009-0316-x
    • (2009) Arch. Virol. , vol.154 , pp. 391-398
    • Hu, H.1    Li, X.2    Zhang, Z.3    Shuai, J.4    Chen, N.5    Liu, G.6    Fang, W.7
  • 11
    • 35548961952 scopus 로고    scopus 로고
    • Infuence of porcine reproductive and respiratory syndrome virus GP5 glycoprotein N-linked glycans on immune responses in mice
    • doi:10.1007/s11262-007-0131-y
    • Jiang W, Jiang P, Wang X, Li Y, Wang X, Du Y (2007): Infuence of porcine reproductive and respiratory syndrome virus GP5 glycoprotein N-linked glycans on immune responses in mice. Virus Genes 35, 663-671. doi:10.1007/s11262-007-0131-y
    • (2007) Virus Genes , vol.35 , pp. 663-671
    • Jiang, W.1    Jiang, P.2    Wang, X.3    Li, Y.4    Wang, X.5    Du, Y.6
  • 12
    • 0029948770 scopus 로고    scopus 로고
    • Genetic variation in porcine reproductive and respiratory syndrome virus isolates in the midwestern United States
    • doi:10.1099/0022-1317-77-6-1271
    • Kapur V, Elam MR, Pawlovich TM, Murtaugh MP (1996): Genetic variation in porcine reproductive and respiratory syndrome virus isolates in the midwestern United States. J. Gen. Virol. 77, 1271-1276. doi:10.1099/0022-1317-77-6-1271
    • (1996) J. Gen. Virol. , vol.77 , pp. 1271-1276
    • Kapur, V.1    Elam, M.R.2    Pawlovich, T.M.3    Murtaugh, M.P.4
  • 13
    • 17744396121 scopus 로고    scopus 로고
    • Not so diferent afer all: A comparison of methods for detecting amino acid sites under selection
    • doi:10.1093/molbev/msi105
    • Kosakovsky Pond SL, Frost SD (2005a): Not so diferent afer all: a comparison of methods for detecting amino acid sites under selection. Mol. Biol. Evol. 22, 1208-1222. doi:10.1093/molbev/msi105
    • (2005) Mol. Biol. Evol. , vol.22 , pp. 1208-1222
    • Kosakovsky Pond, S.L.1    Frost, S.D.2
  • 14
    • 17744395033 scopus 로고    scopus 로고
    • Datamonkey: Rapid detection of selective pressure on individual sites of codon alignments
    • doi:10.1093/bioinformatics/bti320
    • Kosakovsky Pond SL, Frost SD (2005b): Datamonkey: rapid detection of selective pressure on individual sites of codon alignments. Bioinformatics 21, 2531-2533. doi:10.1093/bioinformatics/bti320
    • (2005) Bioinformatics , vol.21 , pp. 2531-2533
    • Kosakovsky Pond, S.L.1    Frost, S.D.2
  • 15
    • 45949109669 scopus 로고    scopus 로고
    • MEGA: A biologist-centric software for evolutionary analysis of DNA and protein sequences
    • doi:10.1093/bib/bbn017
    • Kumar S, Nei M, Dudley J, Tamura K (2008): MEGA: a biologist-centric software for evolutionary analysis of DNA and protein sequences. Brief Bioinform. 9, 299-306. doi:10.1093/bib/bbn017
    • (2008) Brief Bioinform , vol.9 , pp. 299-306
    • Kumar, S.1    Nei, M.2    Dudley, J.3    Tamura, K.4
  • 16
    • 0041386069 scopus 로고    scopus 로고
    • ClustalW-MPI: ClustalW analysis using distributed and parallel computing
    • doi:10.1093/bioinformatics/btg192
    • Li KB (2003): ClustalW-MPI: ClustalW analysis using distributed and parallel computing. Bioinformatics 19, 1585-1586. doi:10.1093/bioinformatics/btg192
    • (2003) Bioinformatics , vol.19 , pp. 1585-1586
    • Li, K.B.1
  • 17
    • 67349220122 scopus 로고    scopus 로고
    • Genetic variation analysis of porcine reproductive and respiratory syndrome virus isolated in China from 2002 to 2007 based on ORF5
    • doi:10.1016/j.vetmic.2009.03.001
    • Li Y, Wang X, Jiang P, Wang X, Chen W, Wang X, Wang K (2009): Genetic variation analysis of porcine reproductive and respiratory syndrome virus isolated in China from 2002 to 2007 based on ORF5. Vet. Microbiol. 138, 150-155. doi:10.1016/j.vetmic.2009.03.001
    • (2009) Vet. Microbiol. , vol.138 , pp. 150-155
    • Li, Y.1    Wang, X.2    Jiang, P.3    Wang, X.4    Chen, W.5    Wang, X.6    Wang, K.7
  • 18
    • 0030199284 scopus 로고    scopus 로고
    • Intracellular synthesis, processing, and transport of proteins encoded by ORFs 5 to 7 of porcine reproductive and respiratory syndrome virus
    • doi:10.1006/viro.1996.0356
    • Mardassi H, Massie B, Dea S (1996): Intracellular synthesis, processing, and transport of proteins encoded by ORFs 5 to 7 of porcine reproductive and respiratory syndrome virus. Virology 221, 98-112. doi:10.1006/viro.1996.0356
    • (1996) Virology , vol.221 , pp. 98-112
    • Mardassi, H.1    Massie, B.2    Dea, S.3
  • 19
    • 0033824415 scopus 로고    scopus 로고
    • RDP: Detection of recombination amongst aligned sequences
    • doi:10.1093/bioinformatics/16.6.562
    • Martin D, Rybicki E (2000): RDP: detection of recombination amongst aligned sequences. Bioinformatics 16, 562-563. doi:10.1093/bioinformatics/16.6.562
    • (2000) Bioinformatics , vol.16 , pp. 562-563
    • Martin, D.1    Rybicki, E.2
  • 20
    • 0027249901 scopus 로고
    • Lelystad virus, the causative agent of porcine epidemic abortion and respiratory syndrome (PEARS), is related to LDV and EAV
    • doi:10.1006/viro.1993.1008
    • Meulenberg JJ, Hulst MM, de Meijer EJ, Moonen PL, den Besten A, de Kluyver E P, Wensvoort G, Moormann RJ (1993): Lelystad virus, the causative agent of porcine epidemic abortion and respiratory syndrome (PEARS), is related to LDV and EAV. Virology 192, 62-72. doi:10.1006/viro.1993.1008
    • (1993) Virology , vol.192 , pp. 62-72
    • Meulenberg, J.J.1    Hulst, M.M.2    de Meijer, E.J.3    Moonen, P.L.4    den Besten, A.5    de Kluyver, E.P.6    Wensvoort, G.7    Moormann, R.J.8
  • 21
    • 0028852340 scopus 로고
    • Comparison of the structural protein coding sequences of the VR-2332 and Lelystad virus strains of the PRRS virus
    • doi:10.1007/BF01322671
    • Murtaugh M P, Elam MR, Kakach LT (1995): Comparison of the structural protein coding sequences of the VR-2332 and Lelystad virus strains of the PRRS virus. Arch. Virol. 140, 1451-1460. doi:10.1007/BF01322671
    • (1995) Arch. Virol. , vol.140 , pp. 1451-1460
    • Murtaugh, M.P.1    Elam, M.R.2    Kakach, L.T.3
  • 22
    • 0031972161 scopus 로고    scopus 로고
    • Likelihood models for detecting positively selected amino acid sites and applications to the HIV-1 envelope gene
    • Nielsen R, Yang Z (1998): Likelihood models for detecting positively selected amino acid sites and applications to the HIV-1 envelope gene. Genetics 148, 929-936.
    • (1998) Genetics , vol.148 , pp. 929-936
    • Nielsen, R.1    Yang, Z.2
  • 23
    • 0036223761 scopus 로고    scopus 로고
    • Identifcation of neutralizing and nonneutralizing epitopes in the porcine reproductive and respiratory syndrome virus GP5 ectodomain
    • doi:10.1128/JVI.76.9.4241-4250.2002
    • Ostrowski M, Galeota JA, Jar AM, Platt KB, Osorio FA, Lopez OJ (2002): Identifcation of neutralizing and nonneutralizing epitopes in the porcine reproductive and respiratory syndrome virus GP5 ectodomain. J. Virol. 76, 4241-4250. doi:10.1128/JVI.76.9.4241-4250.2002
    • (2002) J. Virol. , vol.76 , pp. 4241-4250
    • Ostrowski, M.1    Galeota, J.A.2    Jar, A.M.3    Platt, K.B.4    Osorio, F.A.5    Lopez, O.J.6
  • 24
    • 15744370504 scopus 로고    scopus 로고
    • New insights into the genetic diversity of European porcine reproductive and respiratory syndrome virus (PRRSV)
    • doi:10.1016/j.vetmic.2005.01.028
    • Pesch S, Meyer C, Ohlinger VF (2005): New insights into the genetic diversity of European porcine reproductive and respiratory syndrome virus (PRRSV). Vet. Microbiol. 107, 31-48. doi:10.1016/j.vetmic.2005.01.028
    • (2005) Vet. Microbiol. , vol.107 , pp. 31-48
    • Pesch, S.1    Meyer, C.2    Ohlinger, V.F.3
  • 25
    • 45849154165 scopus 로고    scopus 로고
    • ModelTest: Phylogenetic model averaging
    • doi:10.1093/molbev/msn083
    • Posada D (2008): jModelTest: phylogenetic model averaging. Mol. Biol. Evol. 25, 1253-1256. doi:10.1093/molbev/msn083
    • (2008) Mol. Biol. Evol. , vol.25 , pp. 1253-1256
    • Posada, D.1
  • 27
    • 0036324050 scopus 로고    scopus 로고
    • Identifcation of radically diferent variants of porcine reproductive and respiratory syndrome virus in Eastern Europe: Towards a common ancestor for European and American viruses
    • Stadejek T, Stankevicius A, Storgaard T, Oleksiewicz MB, Belák S, Drew T W, Pejsak Z (2002): Identifcation of radically diferent variants of porcine reproductive and respiratory syndrome virus in Eastern Europe: towards a common ancestor for European and American viruses. J. Gen. Virol. 83, 1861-1873.
    • (2002) J. Gen. Virol. , vol.83 , pp. 1861-1873
    • Stadejek, T.1    Stankevicius, A.2    Storgaard, T.3    Oleksiewicz, M.B.4    Belák, S.5    Drew, T.W.6    Pejsak, Z.7
  • 28
    • 1542395680 scopus 로고    scopus 로고
    • Negative selection on neutralization epitopes of poliovirus surface proteins: Implications for prediction of candidate epitopes for immunization
    • Suzuki Y (2004): Negative selection on neutralization epitopes of poliovirus surface proteins: implications for prediction of candidate epitopes for immunization. Gene 328, 127-133.
    • (2004) Gene , vol.328 , pp. 127-133
    • Suzuki, Y.1
  • 29
    • 33748789595 scopus 로고    scopus 로고
    • Natural selection on the infuenza virus genome
    • doi:10.1093/molbev/msl050
    • Suzuki Y (2006): Natural selection on the infuenza virus genome. Mol. Biol. Evol. 23, 1902-1911. doi:10.1093/molbev/msl050
    • (2006) Mol. Biol. Evol. , vol.23 , pp. 1902-1911
    • Suzuki, Y.1
  • 30
    • 38649136908 scopus 로고    scopus 로고
    • Te selection pressure analysis of classical swine fever virus envelope protein genes Erns and E2
    • doi:10.1016/j.virusres.2007.08.015
    • Tang F, Pan Z, Zhang C (2008): Te selection pressure analysis of classical swine fever virus envelope protein genes Erns and E2. Virus Res. 131, 132-135. doi:10.1016/j. virusres.2007.08.015
    • (2008) Virus Res , vol.131 , pp. 132-135
    • Tang, F.1    Pan, Z.2    Zhang, C.3
  • 31
    • 35548976722 scopus 로고    scopus 로고
    • Evidence for positive selection on the E2 gene of bovine viral diarrhoea virus type 1
    • doi:10.1007/s11262-007-0122-z
    • Tang F, Zhang C (2007): Evidence for positive selection on the E2 gene of bovine viral diarrhoea virus type 1. Virus Genes 35, 629-634. doi:10.1007/s11262-007-0122-z
    • (2007) Virus Genes , vol.35 , pp. 629-634
    • Tang, F.1    Zhang, C.2
  • 33
    • 34247530859 scopus 로고    scopus 로고
    • Virus glycosylation: Role in virulence and immune interactions
    • Vigerust DJ, Shepherd VL (2007): Virus glycosylation: role in virulence and immune interactions. Trends Microbiol. 15, 211-218.
    • (2007) Trends Microbiol , vol.15 , pp. 211-218
    • Vigerust, D.J.1    Shepherd, V.L.2
  • 34
    • 34247530859 scopus 로고    scopus 로고
    • Virus glycosylation: Role in virulence and immune interactions
    • doi:10.1016/j.tim.2007.03.003
    • Vigerust DJ, Shepherd VL (2007): Virus glycosylation: role in virulence and immune interactions. Trends Microbiol. 15, 211-218. doi:10.1016/j.tim.2007.03.003
    • (2007) Trends Microbiol , vol.15 , pp. 211-218
    • Vigerust, D.J.1    Shepherd, V.L.2
  • 36
    • 8544225780 scopus 로고    scopus 로고
    • Accuracy and power of statistical methods for detecting adaptive evolution in protein coding sequences and for identifying positively selected sites
    • doi:10.1534/genetics.104.031153
    • Wong WS, Yang Z, Goldman N, Nielsen R (2004): Accuracy and power of statistical methods for detecting adaptive evolution in protein coding sequences and for identifying positively selected sites. Genetics 168, 1041-1051. doi:10.1534/genetics.104.031153
    • (2004) Genetics , vol.168 , pp. 1041-1051
    • Wong, W.S.1    Yang, Z.2    Goldman, N.3    Nielsen, R.4
  • 38
    • 0034848170 scopus 로고    scopus 로고
    • DAMBE: Sofware package for data analysis in molecular biology and evolution
    • doi:10.1093/jhered/92.4.371
    • Xia X, Xie Z (2001): DAMBE: sofware package for data analysis in molecular biology and evolution. J. Hered. 92, 371-373. doi:10.1093/jhered/92.4.371
    • (2001) J. Hered. , vol.92 , pp. 371-373
    • Xia, X.1    Xie, Z.2
  • 39
    • 0033692959 scopus 로고    scopus 로고
    • Maximum likelihood estimation on large phylogenies and analysis of adaptive evolution in human infuenza virus A
    • Yang Z (2000): Maximum likelihood estimation on large phylogenies and analysis of adaptive evolution in human infuenza virus A. J. Mol. Evol. 5, 423-432.
    • (2000) J. Mol. Evol. , vol.5 , pp. 423-432
    • Yang, Z.1
  • 40
    • 34547803197 scopus 로고    scopus 로고
    • PAML 4: Phylogenetic analysis by maximum likelihood
    • doi:10.1093/molbev/msm088
    • Yang Z (2007): PAML 4: phylogenetic analysis by maximum likelihood. Mol. Biol. Evol. 24, 1586-1591. doi:10.1093/molbev/msm088
    • (2007) Mol. Biol. Evol. , vol.24 , pp. 1586-1591
    • Yang, Z.1
  • 41
    • 0033639150 scopus 로고    scopus 로고
    • Statistical methods for detecting molecular adaptation
    • doi:10.1016/S0169-5347(00)01994-7
    • Yang Z, Bielawski JP (2000): Statistical methods for detecting molecular adaptation. Trends Ecol. Evol. 15, 496-503. doi:10.1016/S0169-5347(00)01994-7
    • (2000) Trends Ecol. Evol. , vol.15 , pp. 496-503
    • Yang, Z.1    Bielawski, J.P.2
  • 42
    • 0034097381 scopus 로고    scopus 로고
    • Codon-substitution models for heterogeneous selection pressure at amino acid sites
    • Yang Z, Nielsen R, Goldman N, Pedersen AM (2000): Codon-substitution models for heterogeneous selection pressure at amino acid sites. Genetics 155, 431-449.
    • (2000) Genetics , vol.155 , pp. 431-449
    • Yang, Z.1    Nielsen, R.2    Goldman, N.3    Pedersen, A.M.4
  • 43
    • 9744280420 scopus 로고    scopus 로고
    • Tracking global patterns of N-linked glycosylation site variation in highly variable viral glycoproteins: HIV, SIV, and HCV envelopes and infuenza hemagglutinin
    • doi:10.1093/glycob/cwh106
    • Zhang M, Gaschen B, Blay W, Foley B, Haigwood N, Kuiken C, Korber B (2004): Tracking global patterns of N-linked glycosylation site variation in highly variable viral glycoproteins: HIV, SIV, and HCV envelopes and infuenza hemagglutinin. Glycobiology 14, 1229-1246. doi:10.1093/glycob/cwh106
    • (2004) Glycobiology , vol.14 , pp. 1229-1246
    • Zhang, M.1    Gaschen, B.2    Blay, W.3    Foley, B.4    Haigwood, N.5    Kuiken, C.6    Korber, B.7


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