메뉴 건너뛰기




Volumn 78, Issue 4, 2004, Pages 1962-1970

Comparative Study of Adaptive Molecular Evolution in Different Human Immunodeficiency Virus Groups and Subtypes

Author keywords

[No Author keywords available]

Indexed keywords

ANTIBODY; EPITOPE;

EID: 0842326022     PISSN: 0022538X     EISSN: None     Source Type: Journal    
DOI: 10.1128/JVI.78.4.1962-1970.2004     Document Type: Article
Times cited : (83)

References (40)
  • 1
    • 0036272936 scopus 로고    scopus 로고
    • Accuracy and power of the Bayes prediction of amino acid sites under positive selection
    • Anisimova, M., J. P. Bielawski, and Z. Yang. 2002. Accuracy and power of the Bayes prediction of amino acid sites under positive selection. Mol. Biol. Evol. 19:950-958.
    • (2002) Mol. Biol. Evol. , vol.19 , pp. 950-958
    • Anisimova, M.1    Bielawski, J.P.2    Yang, Z.3
  • 2
    • 0034897709 scopus 로고    scopus 로고
    • Accuracy and power of the likelihood ratio test in detecting adaptive molecular evolution
    • Anisimova, M., J. P. Bielawski, and Z. Yang. 2001. Accuracy and power of the likelihood ratio test in detecting adaptive molecular evolution. Mol. Biol. Evol. 18:1585-1592.
    • (2001) Mol. Biol. Evol. , vol.18 , pp. 1585-1592
    • Anisimova, M.1    Bielawski, J.P.2    Yang, Z.3
  • 8
    • 0034723385 scopus 로고    scopus 로고
    • AIDS as a zoonosis: Scientific and public health implications
    • Hahn, B. H., G. M. Shaw, K. M. De Cock, and P. M. Sharp. 2000. AIDS as a zoonosis: scientific and public health implications. Science 287:607-614.
    • (2000) Science , vol.287 , pp. 607-614
    • Hahn, B.H.1    Shaw, G.M.2    De Cock, K.M.3    Sharp, P.M.4
  • 9
    • 0031809552 scopus 로고    scopus 로고
    • NetOglyc: Prediction of mucin type O-glycosylation sites based on sequence context and surface accessibility
    • Hansen, J. E., O. Lund, N. Tolstrup, A. A. Gooley, K. L. Williams, and S. Brunak. 1998. NetOglyc: prediction of mucin type O-glycosylation sites based on sequence context and surface accessibility. Glycoconj. J. 15:115-130.
    • (1998) Glycoconj. J. , vol.15 , pp. 115-130
    • Hansen, J.E.1    Lund, O.2    Tolstrup, N.3    Gooley, A.A.4    Williams, K.L.5    Brunak, S.6
  • 14
    • 0030733467 scopus 로고    scopus 로고
    • Host-cell-specific glycosylation of HIV-2 envelope glycoprotein
    • Liedtke, S., R. Geyer, and H. Geyer. 1997. Host-cell-specific glycosylation of HIV-2 envelope glycoprotein. Glycoconj. J. 14:785-793.
    • (1997) Glycoconj. J. , vol.14 , pp. 785-793
    • Liedtke, S.1    Geyer, R.2    Geyer, H.3
  • 15
    • 0037165969 scopus 로고    scopus 로고
    • Evidence of HIV-1 adaptation to HLA-restricted immune responses at a population level
    • Moore, C. B., M. John, I. R. James, F. T. Christiansen, C. S. Witt, and S. A. Mallal. 2002. Evidence of HIV-1 adaptation to HLA-restricted immune responses at a population level. Science 296:1439-1443.
    • (2002) Science , vol.296 , pp. 1439-1443
    • Moore, C.B.1    John, M.2    James, I.R.3    Christiansen, F.T.4    Witt, C.S.5    Mallal, S.A.6
  • 17
    • 0031972161 scopus 로고    scopus 로고
    • Likelihood models for detecting positively selected amino-acid sites and applications to the HIV-1 envelope gene
    • Nielsen, R., and Z. Yang. 1998. Likelihood models for detecting positively selected amino-acid sites and applications to the HIV-1 envelope gene. Genetics 148:929-936.
    • (1998) Genetics , vol.148 , pp. 929-936
    • Nielsen, R.1    Yang, Z.2
  • 18
    • 0037213247 scopus 로고    scopus 로고
    • Fine mapping of the interaction of neutralizing and nonneutralizing monoclonal antibodies with the CD4 binding site of human immunodeficiency virus type 1 gp120
    • Pantophlet, R., E. Ollmann Saphire, P. Poignard, P. W. Parren, I. A. Wilson, and D. R. Burton. 2003. Fine mapping of the interaction of neutralizing and nonneutralizing monoclonal antibodies with the CD4 binding site of human immunodeficiency virus type 1 gp120. J. Virol. 77:642-658.
    • (2003) J. Virol. , vol.77 , pp. 642-658
    • Pantophlet, R.1    Ollmann Saphire, E.2    Poignard, P.3    Parren, P.W.4    Wilson, I.A.5    Burton, D.R.6
  • 19
    • 0030053559 scopus 로고    scopus 로고
    • Glycosylation and stability of mature HIV envelope glycoprotein conformation under various conditions
    • Papandreou, M. J., T. Idziorek, R. Miquelis, and E. Fenouillet. 1996. Glycosylation and stability of mature HIV envelope glycoprotein conformation under various conditions. FEBS Lett. 379:171-176.
    • (1996) FEBS Lett. , vol.379 , pp. 171-176
    • Papandreou, M.J.1    Idziorek, T.2    Miquelis, R.3    Fenouillet, E.4
  • 21
    • 0035918220 scopus 로고    scopus 로고
    • N-linked glycosylation of the HIV type 1 gp120 envelope glycoprotein as a major determinant of CCR5 and CXCR4 coreceptor utilization
    • Pollakis, G., S. Kang, A. Kliphuis, M. I. M. Chalaby, J. Goudsmit, and W. A. Paxton. 2001. N-linked glycosylation of the HIV type 1 gp120 envelope glycoprotein as a major determinant of CCR5 and CXCR4 coreceptor utilization. J. Biol. Chem. 276:13433-13441.
    • (2001) J. Biol. Chem. , vol.276 , pp. 13433-13441
    • Pollakis, G.1    Kang, S.2    Kliphuis, A.3    Chalaby, M.I.M.4    Goudsmit, J.5    Paxton, W.A.6
  • 26
    • 0004249246 scopus 로고
    • W. H. Freeman and Company, New York, N.Y.
    • Sokal, R. R., and F. J. Rohlf. 1981. Biometry. W. H. Freeman and Company, New York, N.Y.
    • (1981) Biometry
    • Sokal, R.R.1    Rohlf, F.J.2
  • 29
    • 0036897701 scopus 로고    scopus 로고
    • Reduced positive selection in vectorborne RNA viruses
    • Woelk, C. H., and E. C. Holmes. 2002. Reduced positive selection in vectorborne RNA viruses. Mol. Biol. Evol. 19:2333-2336.
    • (2002) Mol. Biol. Evol. , vol.19 , pp. 2333-2336
    • Woelk, C.H.1    Holmes, E.C.2
  • 34
    • 0031029083 scopus 로고    scopus 로고
    • Evolutionary mechanisms and population dynamics of the third variable envelope region HIV within single hosts
    • Yamaguchi, Y., and T. Gojobori. 1997. Evolutionary mechanisms and population dynamics of the third variable envelope region HIV within single hosts. Proc. Natl. Acad. Sci. USA 94:1264-1269.
    • (1997) Proc. Natl. Acad. Sci. USA , vol.94 , pp. 1264-1269
    • Yamaguchi, Y.1    Gojobori, T.2
  • 35
    • 0033995286 scopus 로고    scopus 로고
    • Reevaluation of amino acid variability of the human immunodeficiency virus type 1 gp120 envelope glycoprotein and prediction of new discontinuous epitopes
    • Yamaguchi-Kabata, Y., and T. Gojobori. 2000. Reevaluation of amino acid variability of the human immunodeficiency virus type 1 gp120 envelope glycoprotein and prediction of new discontinuous epitopes. J. Virol. 74:4335-4350.
    • (2000) J. Virol. , vol.74 , pp. 4335-4350
    • Yamaguchi-Kabata, Y.1    Gojobori, T.2
  • 36
    • 0030683599 scopus 로고    scopus 로고
    • PAML: A program package for the phylogenetic analysis by maximum likelihood
    • Yang, Z. 1997. PAML: a program package for the phylogenetic analysis by maximum likelihood. Comput. Appl. Biosci. 13:555-556.
    • (1997) Comput. Appl. Biosci. , vol.13 , pp. 555-556
    • Yang, Z.1
  • 37
    • 0033639150 scopus 로고    scopus 로고
    • Statistical methods for detecting molecular adaptation
    • Yang, Z., and J. P. Bielawski. 2000. Statistical methods for detecting molecular adaptation. Trends Ecol. Evol. 15:496-503.
    • (2000) Trends Ecol. Evol. , vol.15 , pp. 496-503
    • Yang, Z.1    Bielawski, J.P.2
  • 38
    • 0034097381 scopus 로고    scopus 로고
    • Codon-substitution models for heterogeneous selection pressure at amino acid sites
    • Yang, Z. H., R. Nielsen, N. Goldman, and A. M. K. Pedersen. 2000. Codon-substitution models for heterogeneous selection pressure at amino acid sites. Genetics 155:431-449.
    • (2000) Genetics , vol.155 , pp. 431-449
    • Yang, Z.H.1    Nielsen, R.2    Goldman, N.3    Pedersen, A.M.K.4
  • 39
    • 0036340475 scopus 로고    scopus 로고
    • Clustering patterns of cytotoxic T-lymphocyte epitopes in human immunodeficiency virus type 1 (HIV-1) proteins reveal imprints of immune evasion on HIV-1 global variation
    • Yusim, K., C. Kesmir, B. Gaschen, M. M. Addo, M. Altfeld, S. Brunak, A. Chigaev, V. Detours, and B. T. Korber. 2002. Clustering patterns of cytotoxic T-lymphocyte epitopes in human immunodeficiency virus type 1 (HIV-1) proteins reveal imprints of immune evasion on HIV-1 global variation. J. Virol. 76:8757-8768.
    • (2002) J. Virol. , vol.76 , pp. 8757-8768
    • Yusim, K.1    Kesmir, C.2    Gaschen, B.3    Addo, M.M.4    Altfeld, M.5    Brunak, S.6    Chigaev, A.7    Detours, V.8    Korber, B.T.9
  • 40
    • 0032737463 scopus 로고    scopus 로고
    • Genealogical evidence for positive selection in the nef gene of HIV-1
    • Zanotto, P. M., E. G. Kallas, R. F. de Souza, and E. C. Holmes. 1999. Genealogical evidence for positive selection in the nef gene of HIV-1. Genetics 153:1077-1089.
    • (1999) Genetics , vol.153 , pp. 1077-1089
    • Zanotto, P.M.1    Kallas, E.G.2    De Souza, R.F.3    Holmes, E.C.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.