Lattice model of oligonucleotide hybridization in solution. I. Model and thermodynamics

Journal of Chemical Physics

Volumn 134, Issue 16, 2011, Pages

  Araque, Juan C ^a,d   Panagiotopoulos, Athanasios Z ^b   Robert, Marc A ^a,c  

^a Rice University   (United States)

^b Princeton University   (United States)

^c RICE UNIVERSITY   (United States)

^d School of Chemical and Molecular Engineering   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BASE-PAIRING; BASE-STACKING; BENDING RIGIDITY; COARSE-GRAINED LATTICE MODELS; COMPLEMENTARY STRAND; CONFORMATIONAL ENTROPY; CUBIC LATTICE; DIRECT SIMULATION; DNA OLIGONUCLEOTIDES; DNA SOLUTIONS; ENTHALPIC BARRIERS; ENTROPIC BARRIER; EXCLUDED VOLUME; LATTICE MODELS; MECHANICAL MODEL; MONTE CARLO SIMULATION METHODS; NUCLEOBASES; OLIGONUCLEOTIDE HYBRIDIZATION; PARALLEL TEMPERING; SEQUENCE-DEPENDENT; STACKING ENERGY; THERMAL STABILITY; THERMODYNAMIC PROCESS;

CRYSTAL LATTICES; DNA; DNA SEQUENCES; MONTE CARLO METHODS; NUCLEIC ACIDS; OLIGONUCLEOTIDES; THERMODYNAMICS;

COMPUTER SIMULATION;

OLIGONUCLEOTIDE; SINGLE STRANDED DNA;

ARTICLE; BASE PAIRING; CHEMICAL STRUCTURE; CHEMISTRY; CONFORMATION; MONTE CARLO METHOD; NUCLEIC ACID HYBRIDIZATION; SOLUTION AND SOLUBILITY; THERMODYNAMICS;

BASE PAIRING; DNA, SINGLE-STRANDED; MODELS, MOLECULAR; MONTE CARLO METHOD; NUCLEIC ACID CONFORMATION; NUCLEIC ACID HYBRIDIZATION; OLIGONUCLEOTIDES; SOLUTIONS; THERMODYNAMICS;

EID: 79955682805     PISSN: 00219606     EISSN: None     Source Type: Journal    
DOI: 10.1063/1.3568145     Document Type: Article

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