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Volumn 129, Issue 4, 2007, Pages 934-941

Does the A·T or G·C base-pair possess enhanced stability? Quantifying the effects of CH⋯O interactions and secondary interactions on base-pair stability using a phenomenological analysis and ab initio calculations

Author keywords

[No Author keywords available]

Indexed keywords

ADDITIVES; COMPUTATIONAL GEOMETRY; HYDROGEN BONDS; NITROGEN COMPOUNDS; PROBES; STABILITY;

EID: 33846609268     PISSN: 00027863     EISSN: None     Source Type: Journal    
DOI: 10.1021/ja066341f     Document Type: Article
Times cited : (114)

References (75)
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    • Del Bene, J. E. Hydrogen Bonding 1. In The Encyclopedia of Computational Chemistry; Schleyer, P. v. R., Allinger, N. L., Clark, T., Gasteiger, J., Kollman, P. A., Schaefer, H. F., III, Schreiner, P. R., Eds.; John Wiley & Sons: Chichester, U.K., 1998; 2, pp 1263-1271.
    • Del Bene, J. E. Hydrogen Bonding 1. In The Encyclopedia of Computational Chemistry; Schleyer, P. v. R., Allinger, N. L., Clark, T., Gasteiger, J., Kollman, P. A., Schaefer, H. F., III, Schreiner, P. R., Eds.; John Wiley & Sons: Chichester, U.K., 1998; Vol. 2, pp 1263-1271.
  • 24
    • 34548328446 scopus 로고    scopus 로고
    • Selected examples: (a) Murray, T. J.; Zimmerman, S. C. J. Am. Chem. Soc. 1992, 114, 4010-4011.
    • Selected examples: (a) Murray, T. J.; Zimmerman, S. C. J. Am. Chem. Soc. 1992, 114, 4010-4011.
  • 34
    • 33846591932 scopus 로고    scopus 로고
    • See Supporting Information for details
    • See Supporting Information for details.
  • 40
    • 33846578312 scopus 로고    scopus 로고
    • Gaussian, Inc, Wallingford, CT
    • Frisch, M. J.; et al. Gaussian 03, revision C.02; Gaussian, Inc.; Wallingford, CT, 2004.
    • (2004) Gaussian 03, revision , Issue.C.02
    • Frisch, M.J.1
  • 63
    • 0021504608 scopus 로고    scopus 로고
    • Selected examples: (a) Carter, P. J.; Winter, G.; Wilkinson, A. J.; Fersht, A. R. Cell 1984, 38, 835-840.
    • Selected examples: (a) Carter, P. J.; Winter, G.; Wilkinson, A. J.; Fersht, A. R. Cell 1984, 38, 835-840.
  • 67
    • 20244366333 scopus 로고    scopus 로고
    • Performing a double mutant cycle experimentally is complicated by the potential presence of differing amounts of normal and reverse Watson-Crick and Hoogsteen forms. In DNA the deletion of the thymine carbonyl group significantly destabilizes the double helix but the deletion alters metal ion binding sites, the spine of hydration, duplex curvature, etc, a Woods, K, Lan, T, McLaughlin, L. W, Williams, L. D. Nucleic Acids Res. 2003, 31, 1536-1540
    • Performing a double mutant cycle experimentally is complicated by the potential presence of differing amounts of normal and reverse Watson-Crick and Hoogsteen forms. In DNA the deletion of the thymine carbonyl group significantly destabilizes the double helix but the deletion alters metal ion binding sites, the spine of hydration, duplex curvature, etc.: (a) Woods, K.; Lan, T.; McLaughlin, L. W.; Williams, L. D. Nucleic Acids Res. 2003, 31, 1536-1540.
  • 74
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    • For arguments against an A·U based prebiotic world see
    • For arguments against an A·U based prebiotic world see: Shapiro, R. Origins Life Evol. Biosphere 1995, 25, 83-98.
    • (1995) Origins Life Evol. Biosphere , vol.25 , pp. 83-98
    • Shapiro, R.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.