-
1
-
-
0032539693
-
-
SantaLucia,J.Jr (1998) A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics. Proc. Natl Acad. Sci., 95, 1460-1465.
-
SantaLucia,J.Jr (1998) A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics. Proc. Natl Acad. Sci., 95, 1460-1465.
-
-
-
-
2
-
-
33845368662
-
Statistical thermo-dynamics and kinetics of DNA multiplex hybridization reactions
-
Horne,M.T., Fish,D.J. and Benight,A.S. (2006) Statistical thermo-dynamics and kinetics of DNA multiplex hybridization reactions. Biophys. J., 91, 4133-4153.
-
(2006)
Biophys. J
, vol.91
, pp. 4133-4153
-
-
Horne, M.T.1
Fish, D.J.2
Benight, A.S.3
-
3
-
-
33644862921
-
On-chip non-equilibrium dissociation curves and dissociation rate constants as methods to assess specificity of oligonucleotide probes
-
Wick,L.M., Rouillard,J.M., Whittam,T.S., Gulari,E., Tiedje,J.M. and Hashsham,S.A. (2006) On-chip non-equilibrium dissociation curves and dissociation rate constants as methods to assess specificity of oligonucleotide probes. Nucleic Acids Res., 34, e26.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Wick, L.M.1
Rouillard, J.M.2
Whittam, T.S.3
Gulari, E.4
Tiedje, J.M.5
Hashsham, S.A.6
-
4
-
-
32544449970
-
Thermodynamics of RNA/DNA hybridization in high-density oligonucleotide microarrays
-
Carlon,E. and Heim,T. (2006) Thermodynamics of RNA/DNA hybridization in high-density oligonucleotide microarrays. Physica A, 362, 433-449.
-
(2006)
Physica A
, vol.362
, pp. 433-449
-
-
Carlon, E.1
Heim, T.2
-
5
-
-
0037934649
-
Modeling of DNA microarray data by using physical properties of hybridization
-
Reld,G.A., Grinstein,G. and Tu,Y. (2003) Modeling of DNA microarray data by using physical properties of hybridization. Proc. Natl Acad. Sci. USA, 100, 7575-7580.
-
(2003)
Proc. Natl Acad. Sci. USA
, vol.100
, pp. 7575-7580
-
-
Reld, G.A.1
Grinstein, G.2
Tu, Y.3
-
6
-
-
34247899099
-
Multiplex SNP discrimination
-
Fish,D.J., Horne,M.T., Searles,B.P., Brewood,G.P. and Benight,A.S. (2007) Multiplex SNP discrimination. Biophys. J., 92, L89-L91.
-
(2007)
Biophys. J
, vol.92
-
-
Fish, D.J.1
Horne, M.T.2
Searles, B.P.3
Brewood, G.P.4
Benight, A.S.5
-
7
-
-
0032520637
-
Parallel thermodynamic analysis of duplexes on oligodeoxyribonucleotide microchips
-
Fotin,A.V., Drobyshev,A.L., Proudnikov,D.Y., Perov,A.N. and Mirzabekov,A.D. (1998) Parallel thermodynamic analysis of duplexes on oligodeoxyribonucleotide microchips. Nucleic Acids Res., 26, 1515-1521.
-
(1998)
Nucleic Acids Res
, vol.26
, pp. 1515-1521
-
-
Fotin, A.V.1
Drobyshev, A.L.2
Proudnikov, D.Y.3
Perov, A.N.4
Mirzabekov, A.D.5
-
8
-
-
0035875122
-
Binding specificity and stability of duplexes formed by modified oligonucleotides with a 4096-hexanucleotide microarray
-
Timofeev,E. and Mirzabekov,A. (2001) Binding specificity and stability of duplexes formed by modified oligonucleotides with a 4096-hexanucleotide microarray. Nucleic Acids Res., 29, 2626-2634.
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 2626-2634
-
-
Timofeev, E.1
Mirzabekov, A.2
-
9
-
-
37649029846
-
DNA hybridization to mismatched templates: A chip study
-
Naef,F., Lim,D.A., Patil,N. and Magnasco,M. (2002) DNA hybridization to mismatched templates: A chip study. Phys. Rev. E. Stat. Nonlin. Soft Matter Phys., 65(4 Pt 1), 040902.
-
(2002)
Phys. Rev. E. Stat. Nonlin. Soft Matter Phys
, vol.65
, Issue.4 PART 1
, pp. 040902
-
-
Naef, F.1
Lim, D.A.2
Patil, N.3
Magnasco, M.4
-
10
-
-
85035214096
-
Solving the riddle of the bright mismatches: Labeling and effective binding in oligonucleotide arrays
-
Naef,F. and Magnasco,M.O. (2003) Solving the riddle of the bright mismatches: Labeling and effective binding in oligonucleotide arrays. Phys. Rev. E. Stat. Nonlin. Soft Matter Phys., 68(1 Pt 1), 011906.
-
(2003)
Phys. Rev. E. Stat. Nonlin. Soft Matter Phys
, vol.68
, Issue.1 PART 1
, pp. 011906
-
-
Naef, F.1
Magnasco, M.O.2
-
11
-
-
33745637448
-
Comment on solving the riddle of the bright mismatches: Labeling and effective binding in oligonucleotide arrays
-
Carlon,E., Heim,T., Wolterink,J.K. and Barkema,G.T. (2006) Comment on solving the riddle of the bright mismatches: Labeling and effective binding in oligonucleotide arrays. Phys. Rev. E. Stat. Nonlin. Soft Matter Phys., 73(6 Pt 1), 063901.
-
(2006)
Phys. Rev. E. Stat. Nonlin. Soft Matter Phys
, vol.73
, Issue.6 PART 1
, pp. 063901
-
-
Carlon, E.1
Heim, T.2
Wolterink, J.K.3
Barkema, G.T.4
-
12
-
-
33847413173
-
Free energy of DNA duplex formation on short oligonucleotide microarrays
-
Zhang,L., Wu,C., Carta,R. and Zhao,H. (2006) Free energy of DNA duplex formation on short oligonucleotide microarrays. Nucleic Acids Res. 35, e18.
-
(2006)
Nucleic Acids Res
, vol.35
-
-
Zhang, L.1
Wu, C.2
Carta, R.3
Zhao, H.4
-
13
-
-
23244431990
-
Specific and nonspecific hybridization of oligonucleotide probes on microarrays
-
Binder,H. and Preibisch,S. (2005) Specific and nonspecific hybridization of oligonucleotide probes on microarrays. Biophys. J., 89, 337-352.
-
(2005)
Biophys. J
, vol.89
, pp. 337-352
-
-
Binder, H.1
Preibisch, S.2
-
14
-
-
1842535013
-
Designing better probes: Effect of probe size, mismatch position and number on hybridization in DNA oligonucleotide microarrays
-
Letowski,J., Brousseau,R. and Masson,L. (2004) Designing better probes: effect of probe size, mismatch position and number on hybridization in DNA oligonucleotide microarrays. J. Microbiol. Meth., 57, 269-278.
-
(2004)
J. Microbiol. Meth
, vol.57
, pp. 269-278
-
-
Letowski, J.1
Brousseau, R.2
Masson, L.3
-
15
-
-
0035881206
-
Expression microarray hybridization kinetics depend on length of the immobilized DNA but are independent of immobilization substrate
-
Stillmanm,B.A. and Tonkinson,J.L. (2001) Expression microarray hybridization kinetics depend on length of the immobilized DNA but are independent of immobilization substrate. Anal. Biochem., 295 149-157.
-
(2001)
Anal. Biochem
, vol.295
, pp. 149-157
-
-
Stillmanm, B.A.1
Tonkinson, J.L.2
-
16
-
-
0036852098
-
Gene expression analysis using oligonucleotide arrays produced by maskless photolithography
-
Nuwaysir,E.F., Huang,W., Albert,T.J., Singh,J., Nuwaysir,K., Pitas,A., Richmond,T., Gorski,T., Berg,J.P. et al. (2002) Gene expression analysis using oligonucleotide arrays produced by maskless photolithography. Genome Res., 12, 1749-55.
-
(2002)
Genome Res
, vol.12
, pp. 1749-1755
-
-
Nuwaysir, E.F.1
Huang, W.2
Albert, T.J.3
Singh, J.4
Nuwaysir, K.5
Pitas, A.6
Richmond, T.7
Gorski, T.8
Berg, J.P.9
-
18
-
-
0026621730
-
Very stable mismatch duplexes: Structural and thermodynamic studies on tandem G.A mismatches in DNA
-
Ebel,S., Lane,A.N. and Brown,T. (1992) Very stable mismatch duplexes: structural and thermodynamic studies on tandem G.A mismatches in DNA. Biochemistry, 31, 12083-12086.
-
(1992)
Biochemistry
, vol.31
, pp. 12083-12086
-
-
Ebel, S.1
Lane, A.N.2
Brown, T.3
-
19
-
-
0028963346
-
Enthalpy-entropy compensation in DNA melting thermodynamics
-
Petruska,J. and Goodman,M.F. (1995) Enthalpy-entropy compensation in DNA melting thermodynamics. J. Biol. Chem., 270, 746-750.
-
(1995)
J. Biol. Chem
, vol.270
, pp. 746-750
-
-
Petruska, J.1
Goodman, M.F.2
-
20
-
-
0035965137
-
Solution structure of a DNA helix incorporating four consecutive non-Watson-Crick base-pairs
-
Chou,S-H. and Chin,K-H. (2001) Solution structure of a DNA helix incorporating four consecutive non-Watson-Crick base-pairs. J. Mol. Bio., 312, 769-781.
-
(2001)
J. Mol. Bio
, vol.312
, pp. 769-781
-
-
Chou, S.-H.1
Chin, K.-H.2
-
21
-
-
0142040363
-
Enthalpy/entropy compensation: Influence of DNA flanking sequence on the binding of 7-amino actinomycin D to its primary binding site in short DNA duplexes
-
Qu,X., Ren,J., Riccelli,P.V., Benight,A.S. and Chaires,J.B. (2003) Enthalpy/entropy compensation: Influence of DNA flanking sequence on the binding of 7-amino actinomycin D to its primary binding site in short DNA duplexes. Biochemistry, 42, 11960-11967.
-
(2003)
Biochemistry
, vol.42
, pp. 11960-11967
-
-
Qu, X.1
Ren, J.2
Riccelli, P.V.3
Benight, A.S.4
Chaires, J.B.5
-
22
-
-
0028969367
-
Influence of neighboring base pairs on the stability of single base bulges and base pairs in a DNA fragment
-
Ke,S. and Wartell,R.M. (1995) Influence of neighboring base pairs on the stability of single base bulges and base pairs in a DNA fragment. Biochemistry, 34, 4593-4630.
-
(1995)
Biochemistry
, vol.34
, pp. 4593-4630
-
-
Ke, S.1
Wartell, R.M.2
-
23
-
-
0032562140
-
Nearest neighbor thermo-dynamic parameters for internal G.A mismatches in DNA
-
Allawi,H.T. and SantaLucia,J.Jr (1998) Nearest neighbor thermo-dynamic parameters for internal G.A mismatches in DNA. Biochemistry, 37 2170-2179.
-
(1998)
Biochemistry
, vol.37
, pp. 2170-2179
-
-
Allawi, H.T.1
SantaLucia Jr, J.2
-
24
-
-
33748265526
-
-
Tikhomirova,A., Beletskaya,I.V. and Chalikian,T.V. (2006) Stability of DNA duplexes containing GG, CC, AA, and TT Mismatches. Biochemistry 45, 10563-10571.
-
Tikhomirova,A., Beletskaya,I.V. and Chalikian,T.V. (2006) Stability of DNA duplexes containing GG, CC, AA, and TT Mismatches. Biochemistry 45, 10563-10571.
-
-
-
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